RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 MCOLN2Q8IZK6 566 aa9.61□□□□□ -0.87
VPS53-203ENST00000401468 PDZD8Q8NEN9 1154 aa9.61□□□□□ -0.87
VPS53-203ENST00000401468 CPA5Q8WXQ8 436 aa9.61□□□□□ -0.87
VPS53-203ENST00000401468 ANP32BQ92688 251 aaKnown RBP9.61□□□□□ -0.87
VPS53-203ENST00000401468 USP13Q92995 863 aaPredicted RBP9.61□□□□□ -0.87
VPS53-203ENST00000401468 C18orf8Q96DM3 657 aa9.61□□□□□ -0.87
VPS53-203ENST00000401468 ERLEC1Q96DZ1 483 aa9.61□□□□□ -0.87
VPS53-203ENST00000401468 CCDC42Q96M95 316 aa9.61□□□□□ -0.87
VPS53-203ENST00000401468 GCNAQ96QF7 691 aa9.61□□□□□ -0.87
VPS53-203ENST00000401468 EIF3CQ99613 913 aaKnown RBP9.61□□□□□ -0.87
VPS53-203ENST00000401468 ULBP1Q9BZM6 244 aa9.61□□□□□ -0.87
VPS53-203ENST00000401468 MIS12Q9H081 205 aa9.61□□□□□ -0.87
VPS53-203ENST00000401468 IRF2BPLQ9H1B7 796 aa9.61□□□□□ -0.87
VPS53-203ENST00000401468 KDM4CQ9H3R0 1056 aa9.61□□□□□ -0.87
VPS53-203ENST00000401468 TASP1Q9H6P5 420 aa9.61□□□□□ -0.87
VPS53-203ENST00000401468 LRRC4Q9HBW1 653 aa9.61□□□□□ -0.87
VPS53-203ENST00000401468 HPS4Q9NQG7 708 aa9.61□□□□□ -0.87
VPS53-203ENST00000401468 GKN1Q9NS71 199 aa9.61□□□□□ -0.87
VPS53-203ENST00000401468 CLIC5Q9NZA1 410 aa9.61□□□□□ -0.87
VPS53-203ENST00000401468 ZMYM5Q9UJ78 669 aa9.61□□□□□ -0.87
VPS53-203ENST00000401468 INTUQ9ULD6 942 aa9.61□□□□□ -0.87
VPS53-203ENST00000401468 STRIP2Q9ULQ0 834 aa9.61□□□□□ -0.87
VPS53-203ENST00000401468 WNT6Q9Y6F9 365 aa9.61□□□□□ -0.87
VPS53-203ENST00000401468 FASNP49327 2511 aaKnown RBP9.6□□□□□ -0.87
VPS53-203ENST00000401468 ANKRD62A6NC57 917 aa9.6□□□□□ -0.87
VPS53-203ENST00000401468 ZNF840PA6NDX5 716 aa9.6□□□□□ -0.87
VPS53-203ENST00000401468 YJEFN3A6XGL0 299 aa9.6□□□□□ -0.87
VPS53-203ENST00000401468 E7ENQ6 273 aa9.6□□□□□ -0.87
VPS53-203ENST00000401468 H3BM21 787 aa9.6□□□□□ -0.87
VPS53-203ENST00000401468 NDUFA10O95299 355 aa9.6□□□□□ -0.87
VPS53-203ENST00000401468 OAS1P00973 400 aaKnown RBP9.6□□□□□ -0.87
VPS53-203ENST00000401468 FTLP02792 175 aaPredicted RBP9.6□□□□□ -0.87
VPS53-203ENST00000401468 CALB1P05937 261 aa9.6□□□□□ -0.87
VPS53-203ENST00000401468 FYNP06241 537 aa9.6□□□□□ -0.87
VPS53-203ENST00000401468 USP17L7P0C7H9 530 aa9.6□□□□□ -0.87
VPS53-203ENST00000401468 MYBL1P10243 752 aa9.6□□□□□ -0.87
VPS53-203ENST00000401468 CHRNB1P11230 501 aa9.6□□□□□ -0.87
VPS53-203ENST00000401468 CDC25CP30307 473 aa9.6□□□□□ -0.87
VPS53-203ENST00000401468 PGFP49763 221 aa9.6□□□□□ -0.87
VPS53-203ENST00000401468 RGS7P49802 495 aa9.6□□□□□ -0.87
VPS53-203ENST00000401468 GFPT1Q06210 699 aaPredicted RBP9.6□□□□□ -0.87
VPS53-203ENST00000401468 CCDC173Q0VFZ6 552 aa9.6□□□□□ -0.87
VPS53-203ENST00000401468 TAF10Q12962 218 aa9.6□□□□□ -0.87
VPS53-203ENST00000401468 EIF4EBP2Q13542 120 aaPredicted RBP9.6□□□□□ -0.87
VPS53-203ENST00000401468 CCDC6Q16204 474 aa9.6□□□□□ -0.87
VPS53-203ENST00000401468 PLEKHA7Q6IQ23 1121 aa9.6□□□□□ -0.87
VPS53-203ENST00000401468 KLHDC10Q6PID8 442 aa9.6□□□□□ -0.87
VPS53-203ENST00000401468 RAD9BQ6WBX8 426 aa9.6□□□□□ -0.87
VPS53-203ENST00000401468 PRR23BQ6ZRT6 265 aa9.6□□□□□ -0.87
VPS53-203ENST00000401468 FAM183BPQ6ZVS7 135 aa9.6□□□□□ -0.87
VPS53-203ENST00000401468 BNIPLQ7Z465 357 aa9.6□□□□□ -0.87
VPS53-203ENST00000401468 CMTM8Q8IZV2 173 aa9.6□□□□□ -0.87
VPS53-203ENST00000401468 ARL14EPQ8N8R7 260 aaPredicted RBP9.6□□□□□ -0.87
VPS53-203ENST00000401468 MSANTD4Q8NCY6 345 aa9.6□□□□□ -0.87
VPS53-203ENST00000401468 C3orf20Q8ND61 904 aa9.6□□□□□ -0.87
VPS53-203ENST00000401468 BPIFB1Q8TDL5 484 aa9.6□□□□□ -0.87
VPS53-203ENST00000401468 CLEC4CQ8WTT0 213 aa9.6□□□□□ -0.87
VPS53-203ENST00000401468 DEPDC1BQ8WUY9 529 aa9.6□□□□□ -0.87
VPS53-203ENST00000401468 DNASE1L2Q92874 299 aa9.6□□□□□ -0.87
VPS53-203ENST00000401468 FBXO32Q969P5 355 aa9.6□□□□□ -0.87
VPS53-203ENST00000401468 NT5C3BQ969T7 300 aa9.6□□□□□ -0.87
VPS53-203ENST00000401468 CLDN23Q96B33 292 aa9.6□□□□□ -0.87
VPS53-203ENST00000401468 CHFRQ96EP1 664 aa9.6□□□□□ -0.87
VPS53-203ENST00000401468 PIWIL1Q96J94 861 aaKnown RBP9.6□□□□□ -0.87
VPS53-203ENST00000401468 SLITRK1Q96PX8 696 aa9.6□□□□□ -0.87
VPS53-203ENST00000401468 SLC2A13Q96QE2 648 aa9.6□□□□□ -0.87
VPS53-203ENST00000401468 PDCL3Q9H2J4 239 aa9.6□□□□□ -0.87
VPS53-203ENST00000401468 TRPV4Q9HBA0 871 aa9.6□□□□□ -0.87
VPS53-203ENST00000401468 FBRSL1Q9HCM7 1045 aaKnown RBP9.6□□□□□ -0.87
VPS53-203ENST00000401468 ZDHHC4Q9NPG8 344 aa9.6□□□□□ -0.87
VPS53-203ENST00000401468 TLR8Q9NR97 1041 aaKnown RBP9.6□□□□□ -0.87
VPS53-203ENST00000401468 OSER1Q9NX31 292 aa9.6□□□□□ -0.87
VPS53-203ENST00000401468 SMPD4Q9NXE4 827 aa9.6□□□□□ -0.87
VPS53-203ENST00000401468 ADAM22Q9P0K1 906 aa9.6□□□□□ -0.87
VPS53-203ENST00000401468 WDR35Q9P2L0 1181 aa9.6□□□□□ -0.87
VPS53-203ENST00000401468 TMEM59LQ9UK28 342 aa9.6□□□□□ -0.87
VPS53-203ENST00000401468 MAP4K5Q9Y4K4 846 aa9.6□□□□□ -0.87
VPS53-203ENST00000401468 SOWAHDA6NJG2 315 aa9.59□□□□□ -0.87
VPS53-203ENST00000401468 SIGLEC16A6NMB1 481 aa9.59□□□□□ -0.87
VPS53-203ENST00000401468 CHADO15335 359 aa9.59□□□□□ -0.87
VPS53-203ENST00000401468 ARHGAP6O43182 974 aa9.59□□□□□ -0.87
VPS53-203ENST00000401468 AKR1B10O60218 316 aa9.59□□□□□ -0.87
VPS53-203ENST00000401468 MTA2O94776 668 aa9.59□□□□□ -0.87
VPS53-203ENST00000401468 CYP1A2P05177 515 aa9.59□□□□□ -0.87
VPS53-203ENST00000401468 BMP2P12643 396 aa9.59□□□□□ -0.87
VPS53-203ENST00000401468 LCP1P13796 627 aa9.59□□□□□ -0.87
VPS53-203ENST00000401468 DDX6P26196 483 aaKnown RBP eCLIP9.59□□□□□ -0.87
VPS53-203ENST00000401468 CYLC1P35663 651 aaPredicted RBP9.59□□□□□ -0.87
VPS53-203ENST00000401468 GMPRP36959 345 aa9.59□□□□□ -0.87
VPS53-203ENST00000401468 AVPR1AP37288 418 aa9.59□□□□□ -0.87
VPS53-203ENST00000401468 ZXDBP98169 803 aa9.59□□□□□ -0.87
VPS53-203ENST00000401468 SLC6A3Q01959 620 aa9.59□□□□□ -0.87
VPS53-203ENST00000401468 FCHO2Q0JRZ9 810 aa9.59□□□□□ -0.87
VPS53-203ENST00000401468 MTF1Q14872 753 aa9.59□□□□□ -0.87
VPS53-203ENST00000401468 EFHC1Q5JVL4 640 aa9.59□□□□□ -0.87
VPS53-203ENST00000401468 MSANTD2Q6P1R3 559 aa9.59□□□□□ -0.87
VPS53-203ENST00000401468 MMS22LQ6ZRQ5 1243 aa9.59□□□□□ -0.87
VPS53-203ENST00000401468 TOGARAM2Q6ZUX3 1019 aa9.59□□□□□ -0.87
VPS53-203ENST00000401468 SFTPA1Q8IWL2 248 aa9.59□□□□□ -0.87
VPS53-203ENST00000401468 SIX6OS1Q8N1H7 587 aa9.59□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms