RNA–Protein interactions for RNA: ENST00000398738.2

PTCHD4-202, Transcript of patched domain containing 4, humanhuman

TSL 1 (best)

Gene PTCHD4, Length 3,232 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD4-202ENST00000398738 VCPIP1Q96JH7 1222 aa10.18□□□□□ -0.78
PTCHD4-202ENST00000398738 MARK4Q96L34 752 aa10.18□□□□□ -0.78
PTCHD4-202ENST00000398738 FBXL18Q96ME1 805 aa10.18□□□□□ -0.78
PTCHD4-202ENST00000398738 CEP41Q9BYV8 373 aa10.18□□□□□ -0.78
PTCHD4-202ENST00000398738 SEMA6AQ9H2E6 1030 aa10.18□□□□□ -0.78
PTCHD4-202ENST00000398738 ARHGEF38Q9NXL2 777 aa10.18□□□□□ -0.78
PTCHD4-202ENST00000398738 FAF1Q9UNN5 650 aaPredicted RBP10.18□□□□□ -0.78
PTCHD4-202ENST00000398738 TTLL3Q9Y4R7 772 aa10.18□□□□□ -0.78
PTCHD4-202ENST00000398738 ZBED1O96006 694 aa10.18□□□□□ -0.78
PTCHD4-202ENST00000398738 ENO3P13929 434 aaPredicted RBP10.18□□□□□ -0.78
PTCHD4-202ENST00000398738 FUT4P22083 530 aa10.18□□□□□ -0.78
PTCHD4-202ENST00000398738 FGFR3P22607 806 aa10.18□□□□□ -0.78
PTCHD4-202ENST00000398738 ADORA2AP29274 412 aa10.18□□□□□ -0.78
PTCHD4-202ENST00000398738 RGS2P41220 211 aa10.18□□□□□ -0.78
PTCHD4-202ENST00000398738 GTF2A2P52657 109 aa10.18□□□□□ -0.78
PTCHD4-202ENST00000398738 KRT81Q14533 505 aa10.18□□□□□ -0.78
PTCHD4-202ENST00000398738 CRY2Q49AN0 593 aa10.18□□□□□ -0.78
PTCHD4-202ENST00000398738 KCTD21Q4G0X4 260 aa10.18□□□□□ -0.78
PTCHD4-202ENST00000398738 PPM1LQ5SGD2 360 aa10.18□□□□□ -0.78
PTCHD4-202ENST00000398738 SH2D4BQ5SQS7 431 aa10.18□□□□□ -0.78
PTCHD4-202ENST00000398738 ARHGEF16Q5VV41 709 aa10.18□□□□□ -0.78
PTCHD4-202ENST00000398738 CC2D2BQ6DHV5 1058 aa10.18□□□□□ -0.78
PTCHD4-202ENST00000398738 NXNQ6DKJ4 435 aa10.18□□□□□ -0.78
PTCHD4-202ENST00000398738 UNC5AQ6ZN44 842 aa10.18□□□□□ -0.78
PTCHD4-202ENST00000398738 BPHLQ86WA6 291 aaPredicted RBP10.18□□□□□ -0.78
PTCHD4-202ENST00000398738 ATCAYQ86WG3 371 aa10.18□□□□□ -0.78
PTCHD4-202ENST00000398738 C10orf107Q8IVU9 208 aa10.18□□□□□ -0.78
PTCHD4-202ENST00000398738 C4orf19Q8IY42 314 aa10.18□□□□□ -0.78
PTCHD4-202ENST00000398738 DEPTORQ8TB45 409 aa10.18□□□□□ -0.78
PTCHD4-202ENST00000398738 NGRNQ9NPE2 291 aaKnown RBP10.18□□□□□ -0.78
PTCHD4-202ENST00000398738 THAP1Q9NVV9 213 aa10.18□□□□□ -0.78
PTCHD4-202ENST00000398738 AP4B1Q9Y6B7 739 aa10.18□□□□□ -0.78
PTCHD4-202ENST00000398738 TAF1LQ8IZX4 1826 aa10.18□□□□□ -0.78
PTCHD4-202ENST00000398738 COL24A1Q17RW2 1714 aa10.18□□□□□ -0.78
PTCHD4-202ENST00000398738 C3orf70A6NLC5 250 aaPredicted RBP10.18□□□□□ -0.78
PTCHD4-202ENST00000398738 E7ESA3 106 aa10.18□□□□□ -0.78
PTCHD4-202ENST00000398738 STX16-NPEPL1H3BU86 382 aa10.18□□□□□ -0.78
PTCHD4-202ENST00000398738 AMHP03971 560 aa10.18□□□□□ -0.78
PTCHD4-202ENST00000398738 NR3C2P08235 984 aa10.18□□□□□ -0.78
PTCHD4-202ENST00000398738 KRT7P08729 469 aa10.18□□□□□ -0.78
PTCHD4-202ENST00000398738 ITGAXP20702 1163 aa10.18□□□□□ -0.78
PTCHD4-202ENST00000398738 PPIDQ08752 370 aaKnown RBP10.18□□□□□ -0.78
PTCHD4-202ENST00000398738 TEX44Q53QW1 395 aa10.18□□□□□ -0.78
PTCHD4-202ENST00000398738 LRRC8BQ6P9F7 803 aa10.18□□□□□ -0.78
PTCHD4-202ENST00000398738 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP10.18□□□□□ -0.78
PTCHD4-202ENST00000398738 TRIML2Q8N7C3 387 aa10.18□□□□□ -0.78
PTCHD4-202ENST00000398738 UBA3Q8TBC4 463 aa10.18□□□□□ -0.78
PTCHD4-202ENST00000398738 GRIN3AQ8TCU5 1115 aa10.18□□□□□ -0.78
PTCHD4-202ENST00000398738 TFB1MQ8WVM0 346 aaKnown RBP10.18□□□□□ -0.78
PTCHD4-202ENST00000398738 TMIGD2Q96BF3 282 aa10.18□□□□□ -0.78
PTCHD4-202ENST00000398738 WDR55Q9H6Y2 383 aaPredicted RBP10.18□□□□□ -0.78
PTCHD4-202ENST00000398738 SIRPGQ9P1W8 387 aa10.18□□□□□ -0.78
PTCHD4-202ENST00000398738 FZD1Q9UP38 647 aa10.18□□□□□ -0.78
PTCHD4-202ENST00000398738 SMIM31A0A1B0GVY4 71 aa10.17□□□□□ -0.78
PTCHD4-202ENST00000398738 POLRMTO00411 1230 aaKnown RBP10.17□□□□□ -0.78
PTCHD4-202ENST00000398738 CSPG5O95196 566 aa10.17□□□□□ -0.78
PTCHD4-202ENST00000398738 CRTAMO95727 393 aa10.17□□□□□ -0.78
PTCHD4-202ENST00000398738 SMIM18P0DKX4 95 aa10.17□□□□□ -0.78
PTCHD4-202ENST00000398738 RPL10P27635 214 aaKnown RBP10.17□□□□□ -0.78
PTCHD4-202ENST00000398738 PGGT1BP53609 377 aa10.17□□□□□ -0.78
PTCHD4-202ENST00000398738 SEC13P55735 322 aa10.17□□□□□ -0.78
PTCHD4-202ENST00000398738 CYLC2Q14093 348 aaPredicted RBP10.17□□□□□ -0.78
PTCHD4-202ENST00000398738 SLC27A3Q5K4L6 730 aa10.17□□□□□ -0.78
PTCHD4-202ENST00000398738 FAM102AQ5T9C2 384 aaPredicted RBP10.17□□□□□ -0.78
PTCHD4-202ENST00000398738 ATG14Q6ZNE5 492 aa10.17□□□□□ -0.78
PTCHD4-202ENST00000398738 KRT27Q7Z3Y8 459 aa10.17□□□□□ -0.78
PTCHD4-202ENST00000398738 SP8Q8IXZ3 490 aa10.17□□□□□ -0.78
PTCHD4-202ENST00000398738 ZNF513Q8N8E2 541 aaPredicted RBP10.17□□□□□ -0.78
PTCHD4-202ENST00000398738 CDRT15Q96T59 188 aa10.17□□□□□ -0.78
PTCHD4-202ENST00000398738 DCUN1D5Q9BTE7 237 aa10.17□□□□□ -0.78
PTCHD4-202ENST00000398738 USP18Q9UMW8 372 aa10.17□□□□□ -0.78
PTCHD4-202ENST00000398738 POLIQ9UNA4 740 aa10.17□□□□□ -0.78
PTCHD4-202ENST00000398738 BOLA2-SMG1P6H3BVE0 249 aa10.17□□□□□ -0.78
PTCHD4-202ENST00000398738 DNAJA2O60884 412 aa10.17□□□□□ -0.78
PTCHD4-202ENST00000398738 ZC3H11AO75152 810 aaKnown RBP eCLIP10.17□□□□□ -0.78
PTCHD4-202ENST00000398738 TFPTP0C1Z6 253 aa10.17□□□□□ -0.78
PTCHD4-202ENST00000398738 CDK4P11802 303 aa10.17□□□□□ -0.78
PTCHD4-202ENST00000398738 SLC25A11Q02978 314 aaKnown RBP10.17□□□□□ -0.78
PTCHD4-202ENST00000398738 MAP3K21Q5TCX8 1036 aa10.17□□□□□ -0.78
PTCHD4-202ENST00000398738 DUS1LQ6P1R4 473 aaKnown RBP10.17□□□□□ -0.78
PTCHD4-202ENST00000398738 THNSL1Q8IYQ7 743 aa10.17□□□□□ -0.78
PTCHD4-202ENST00000398738 ZNF784Q8NCA9 323 aaPredicted RBP10.17□□□□□ -0.78
PTCHD4-202ENST00000398738 PRICKLE1Q96MT3 831 aaPredicted RBP10.17□□□□□ -0.78
PTCHD4-202ENST00000398738 CPXM1Q96SM3 734 aa10.17□□□□□ -0.78
PTCHD4-202ENST00000398738 CAAP1Q9H8G2 361 aa10.17□□□□□ -0.78
PTCHD4-202ENST00000398738 CXXC1Q9P0U4 656 aaPredicted RBP10.17□□□□□ -0.78
PTCHD4-202ENST00000398738 CYTH4Q9UIA0 394 aa10.17□□□□□ -0.78
PTCHD4-202ENST00000398738 HERC5Q9UII4 1024 aaKnown RBP10.17□□□□□ -0.78
PTCHD4-202ENST00000398738 CCDC78A2IDD5 438 aa10.16□□□□□ -0.78
PTCHD4-202ENST00000398738 KLHL2O95198 593 aa10.16□□□□□ -0.78
PTCHD4-202ENST00000398738 APOEP02649 317 aa10.16□□□□□ -0.78
PTCHD4-202ENST00000398738 ZNF16P17020 682 aaPredicted RBP10.16□□□□□ -0.78
PTCHD4-202ENST00000398738 IDH3AP50213 366 aa10.16□□□□□ -0.78
PTCHD4-202ENST00000398738 HDAC4P56524 1084 aa10.16□□□□□ -0.78
PTCHD4-202ENST00000398738 TEDDM1Q5T9Z0 273 aa10.16□□□□□ -0.78
PTCHD4-202ENST00000398738 LRRC38Q5VT99 294 aa10.16□□□□□ -0.78
PTCHD4-202ENST00000398738 ANGEL2Q5VTE6 544 aaKnown RBP10.16□□□□□ -0.78
PTCHD4-202ENST00000398738 AAGABQ6PD74 315 aa10.16□□□□□ -0.78
PTCHD4-202ENST00000398738 KYAT3Q6YP21 454 aaKnown RBP10.16□□□□□ -0.78
PTCHD4-202ENST00000398738 C15orf39Q6ZRI6 1047 aa10.16□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms