RNA–Protein interactions for RNA: ENST00000394269.7

TCOF1-203, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 3,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-203ENST00000394269 SLC17A7Q9P2U7 560 aa11.48□□□□□ -0.57
TCOF1-203ENST00000394269 HCSTQ9UBK5 93 aa11.48□□□□□ -0.57
TCOF1-203ENST00000394269 LGALS13Q9UHV8 139 aa11.48□□□□□ -0.57
TCOF1-203ENST00000394269 CDH23Q9H251 3354 aa11.48□□□□□ -0.57
TCOF1-203ENST00000394269 TRIM49D1C9J1S8 452 aa11.48□□□□□ -0.57
TCOF1-203ENST00000394269 CHADO15335 359 aa11.48□□□□□ -0.57
TCOF1-203ENST00000394269 TCEA3O75764 348 aa11.48□□□□□ -0.57
TCOF1-203ENST00000394269 UPP2O95045 317 aa11.48□□□□□ -0.57
TCOF1-203ENST00000394269 GRK4P32298 578 aa11.48□□□□□ -0.57
TCOF1-203ENST00000394269 GATMP50440 423 aa11.48□□□□□ -0.57
TCOF1-203ENST00000394269 MGAT3Q09327 533 aa11.48□□□□□ -0.57
TCOF1-203ENST00000394269 OVGP1Q12889 678 aa11.48□□□□□ -0.57
TCOF1-203ENST00000394269 BTBD8Q5XKL5 378 aa11.48□□□□□ -0.57
TCOF1-203ENST00000394269 ECHDC2Q86YB7 292 aa11.48□□□□□ -0.57
TCOF1-203ENST00000394269 LRRC8CQ8TDW0 803 aa11.48□□□□□ -0.57
TCOF1-203ENST00000394269 CKAP2Q8WWK9 683 aa11.48□□□□□ -0.57
TCOF1-203ENST00000394269 RSPH1Q8WYR4 309 aa11.48□□□□□ -0.57
TCOF1-203ENST00000394269 C11orf84Q9BUA3 381 aaPredicted RBP11.48□□□□□ -0.57
TCOF1-203ENST00000394269 GPR15P49685 360 aa11.48□□□□□ -0.57
TCOF1-203ENST00000394269 RTN4RL1Q86UN2 441 aaPredicted RBP11.48□□□□□ -0.57
TCOF1-203ENST00000394269 FAM111AQ96PZ2 611 aa11.48□□□□□ -0.57
TCOF1-203ENST00000394269 CNGB3Q9NQW8 809 aa11.48□□□□□ -0.57
TCOF1-203ENST00000394269 ABCF3Q9NUQ8 709 aa11.48□□□□□ -0.57
TCOF1-203ENST00000394269 SRRDQ9UH36 339 aa11.48□□□□□ -0.57
TCOF1-203ENST00000394269 SLC27A5Q9Y2P5 690 aa11.48□□□□□ -0.57
TCOF1-203ENST00000394269 TEX264Q9Y6I9 313 aa11.48□□□□□ -0.57
TCOF1-203ENST00000394269 ATP9BO43861 1147 aa11.47□□□□□ -0.57
TCOF1-203ENST00000394269 LPXNO60711 386 aa11.47□□□□□ -0.57
TCOF1-203ENST00000394269 HMBSP08397 361 aa11.47□□□□□ -0.57
TCOF1-203ENST00000394269 TPH1P17752 444 aa11.47□□□□□ -0.57
TCOF1-203ENST00000394269 NR2C2P49116 596 aa11.47□□□□□ -0.57
TCOF1-203ENST00000394269 INTS6LQ5JSJ4 861 aaKnown RBP11.47□□□□□ -0.57
TCOF1-203ENST00000394269 LRRC6Q86X45 466 aa11.47□□□□□ -0.57
TCOF1-203ENST00000394269 ATAD1Q8NBU5 361 aa11.47□□□□□ -0.57
TCOF1-203ENST00000394269 SH3TC2Q8TF17 1288 aa11.47□□□□□ -0.57
TCOF1-203ENST00000394269 DMAP1Q9NPF5 467 aaPredicted RBP11.47□□□□□ -0.57
TCOF1-203ENST00000394269 SLC24A2Q9UI40 661 aa11.47□□□□□ -0.57
TCOF1-203ENST00000394269 DCTN4Q9UJW0 460 aa11.47□□□□□ -0.57
TCOF1-203ENST00000394269 DNM1LO00429 736 aa11.47□□□□□ -0.57
TCOF1-203ENST00000394269 MGAT1P26572 445 aa11.47□□□□□ -0.57
TCOF1-203ENST00000394269 MAGEA9P43362 315 aa11.47□□□□□ -0.57
TCOF1-203ENST00000394269 PDK1Q15118 436 aa11.47□□□□□ -0.57
TCOF1-203ENST00000394269 TAC4Q86UU9 113 aa11.47□□□□□ -0.57
TCOF1-203ENST00000394269 KLHDC9Q8NEP7 349 aa11.47□□□□□ -0.57
TCOF1-203ENST00000394269 KCTD13Q8WZ19 329 aa11.47□□□□□ -0.57
TCOF1-203ENST00000394269 SERAC1Q96JX3 654 aa11.47□□□□□ -0.57
TCOF1-203ENST00000394269 GRID1Q9ULK0 1009 aa11.47□□□□□ -0.57
TCOF1-203ENST00000394269 MYO7AQ13402 2215 aa11.47□□□□□ -0.57
TCOF1-203ENST00000394269 SNX3O60493 162 aa11.47□□□□□ -0.57
TCOF1-203ENST00000394269 LRIG2O94898 1065 aa11.47□□□□□ -0.57
TCOF1-203ENST00000394269 FBXO21O94952 628 aa11.47□□□□□ -0.57
TCOF1-203ENST00000394269 JCHAINP01591 159 aa11.47□□□□□ -0.57
TCOF1-203ENST00000394269 RAB27AP51159 221 aa11.47□□□□□ -0.57
TCOF1-203ENST00000394269 GRIK3Q13003 919 aa11.47□□□□□ -0.57
TCOF1-203ENST00000394269 NR1H3Q13133 447 aa11.47□□□□□ -0.57
TCOF1-203ENST00000394269 UNC5AQ6ZN44 842 aa11.47□□□□□ -0.57
TCOF1-203ENST00000394269 BZW1Q7L1Q6 419 aaKnown RBP11.47□□□□□ -0.57
TCOF1-203ENST00000394269 LIMS2Q7Z4I7 341 aa11.47□□□□□ -0.57
TCOF1-203ENST00000394269 RIBC1Q8N443 379 aaPredicted RBP11.47□□□□□ -0.57
TCOF1-203ENST00000394269 ACBD6Q9BR61 282 aa11.47□□□□□ -0.57
TCOF1-203ENST00000394269 USP15Q9Y4E8 981 aaPredicted RBP11.47□□□□□ -0.57
TCOF1-203ENST00000394269 A0A0A0MRY4 1105 aa11.46□□□□□ -0.57
TCOF1-203ENST00000394269 IQANK1A0A1B0GTG1 560 aa11.46□□□□□ -0.57
TCOF1-203ENST00000394269 GOLGA8TH3BQL2 631 aa11.46□□□□□ -0.57
TCOF1-203ENST00000394269 NEBLO76041 1014 aa11.46□□□□□ -0.57
TCOF1-203ENST00000394269 SUN1O94901 812 aa11.46□□□□□ -0.57
TCOF1-203ENST00000394269 INHAP05111 366 aa11.46□□□□□ -0.57
TCOF1-203ENST00000394269 TAC1P20366 129 aa11.46□□□□□ -0.57
TCOF1-203ENST00000394269 HOXD10P28358 340 aa11.46□□□□□ -0.57
TCOF1-203ENST00000394269 ABCG1P45844 678 aa11.46□□□□□ -0.57
TCOF1-203ENST00000394269 VEGFBP49765 207 aa11.46□□□□□ -0.57
TCOF1-203ENST00000394269 SLC5A3P53794 718 aa11.46□□□□□ -0.57
TCOF1-203ENST00000394269 SARNPP82979 210 aaKnown RBP11.46□□□□□ -0.57
TCOF1-203ENST00000394269 MBTPS1Q14703 1052 aa11.46□□□□□ -0.57
TCOF1-203ENST00000394269 SPATA21Q7Z572 469 aa11.46□□□□□ -0.57
TCOF1-203ENST00000394269 MIB1Q86YT6 1006 aa11.46□□□□□ -0.57
TCOF1-203ENST00000394269 ZNF567Q8N184 647 aa11.46□□□□□ -0.57
TCOF1-203ENST00000394269 NPWQ8N729 165 aa11.46□□□□□ -0.57
TCOF1-203ENST00000394269 DCAKDQ8WVC6 231 aa11.46□□□□□ -0.57
TCOF1-203ENST00000394269 PPM1EQ8WY54 764 aa11.46□□□□□ -0.57
TCOF1-203ENST00000394269 SPATA13Q96N96 652 aa11.46□□□□□ -0.57
TCOF1-203ENST00000394269 UPF3AQ9H1J1 476 aaKnown RBP11.46□□□□□ -0.57
TCOF1-203ENST00000394269 WDR6Q9NNW5 1121 aaKnown RBP11.46□□□□□ -0.57
TCOF1-203ENST00000394269 NUP205Q92621 2012 aa11.46□□□□□ -0.57
TCOF1-203ENST00000394269 CCDC195A0A1B0GUA6 201 aa11.46□□□□□ -0.58
TCOF1-203ENST00000394269 CCT8L1PA6NM43 557 aa11.46□□□□□ -0.58
TCOF1-203ENST00000394269 PPP1R12AO14974 1030 aaPredicted RBP11.46□□□□□ -0.58
TCOF1-203ENST00000394269 ZNF623O75123 536 aa11.46□□□□□ -0.58
TCOF1-203ENST00000394269 TOP3BO95985 862 aaKnown RBP11.46□□□□□ -0.58
TCOF1-203ENST00000394269 IGHA2P01877 340 aa11.46□□□□□ -0.58
TCOF1-203ENST00000394269 SAT1P21673 171 aa11.46□□□□□ -0.58
TCOF1-203ENST00000394269 FAM171A1Q5VUB5 890 aa11.46□□□□□ -0.58
TCOF1-203ENST00000394269 ADGRD1Q6QNK2 874 aa11.46□□□□□ -0.58
TCOF1-203ENST00000394269 PACS2Q86VP3 889 aa11.46□□□□□ -0.58
TCOF1-203ENST00000394269 DBF4BQ8NFT6 615 aa11.46□□□□□ -0.58
TCOF1-203ENST00000394269 OR52K1Q8NGK4 314 aa11.46□□□□□ -0.58
TCOF1-203ENST00000394269 SGSM3Q96HU1 749 aa11.46□□□□□ -0.58
TCOF1-203ENST00000394269 QKIQ96PU8 341 aaKnown RBP eCLIP11.46□□□□□ -0.58
TCOF1-203ENST00000394269 TSPAN18Q96SJ8 248 aa11.46□□□□□ -0.58
TCOF1-203ENST00000394269 KLHL14Q9P2G3 628 aa11.46□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms