RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 LRRC4Q9HBW1 653 aa9.95□□□□□ -0.82
COL6A3-204ENST00000392003 CORO1CQ9ULV4 474 aaPredicted RBP9.95□□□□□ -0.82
COL6A3-204ENST00000392003 SMIM28A0A1B0GU29 152 aa9.94□□□□□ -0.82
COL6A3-204ENST00000392003 GPR32O75388 356 aa9.94□□□□□ -0.82
COL6A3-204ENST00000392003 APOEP02649 317 aa9.94□□□□□ -0.82
COL6A3-204ENST00000392003 CTSHP09668 335 aa9.94□□□□□ -0.82
COL6A3-204ENST00000392003 L1CAMP32004 1257 aa9.94□□□□□ -0.82
COL6A3-204ENST00000392003 FAAH2Q6GMR7 532 aa9.94□□□□□ -0.82
COL6A3-204ENST00000392003 CASC4Q6P4E1 433 aa9.94□□□□□ -0.82
COL6A3-204ENST00000392003 ZNF449Q6P9G9 518 aa9.94□□□□□ -0.82
COL6A3-204ENST00000392003 SLC2A14Q8TDB8 520 aa9.94□□□□□ -0.82
COL6A3-204ENST00000392003 TFB1MQ8WVM0 346 aaKnown RBP9.94□□□□□ -0.82
COL6A3-204ENST00000392003 KHSRPQ92945 711 aaKnown RBP eCLIP9.94□□□□□ -0.82
COL6A3-204ENST00000392003 LPIN3Q9BQK8 851 aa9.94□□□□□ -0.82
COL6A3-204ENST00000392003 MED10Q9BTT4 135 aa9.94□□□□□ -0.82
COL6A3-204ENST00000392003 TUBB6Q9BUF5 446 aa9.94□□□□□ -0.82
COL6A3-204ENST00000392003 CDHR5Q9HBB8 845 aa9.94□□□□□ -0.82
COL6A3-204ENST00000392003 GPBP1L1Q9HC44 474 aaPredicted RBP9.94□□□□□ -0.82
COL6A3-204ENST00000392003 CHKBQ9Y259 395 aa9.94□□□□□ -0.82
COL6A3-204ENST00000392003 PLXNA1Q9UIW2 1896 aa9.94□□□□□ -0.82
COL6A3-204ENST00000392003 A0A0G2JND7 137 aa9.94□□□□□ -0.82
COL6A3-204ENST00000392003 H3BRJ5 948 aa9.94□□□□□ -0.82
COL6A3-204ENST00000392003 C2CD2LO14523 706 aa9.94□□□□□ -0.82
COL6A3-204ENST00000392003 GCATO75600 419 aa9.94□□□□□ -0.82
COL6A3-204ENST00000392003 F2P00734 622 aa9.94□□□□□ -0.82
COL6A3-204ENST00000392003 KRT16P08779 473 aa9.94□□□□□ -0.82
COL6A3-204ENST00000392003 AKR1A1P14550 325 aa9.94□□□□□ -0.82
COL6A3-204ENST00000392003 CCNB1P14635 433 aa9.94□□□□□ -0.82
COL6A3-204ENST00000392003 FDFT1P37268 417 aa9.94□□□□□ -0.82
COL6A3-204ENST00000392003 ARFIP2P53365 341 aa9.94□□□□□ -0.82
COL6A3-204ENST00000392003 GBE1Q04446 702 aa9.94□□□□□ -0.82
COL6A3-204ENST00000392003 ANKRD20A3Q5VUR7 823 aa9.94□□□□□ -0.82
COL6A3-204ENST00000392003 STRADAQ7RTN6 431 aa9.94□□□□□ -0.82
COL6A3-204ENST00000392003 ADGRF2Q8IZF7 708 aa9.94□□□□□ -0.82
COL6A3-204ENST00000392003 SIX6OS1Q8N1H7 587 aa9.94□□□□□ -0.82
COL6A3-204ENST00000392003 CLEC4CQ8WTT0 213 aa9.94□□□□□ -0.82
COL6A3-204ENST00000392003 DEPDC1BQ8WUY9 529 aa9.94□□□□□ -0.82
COL6A3-204ENST00000392003 C10orf82Q8WW14 230 aa9.94□□□□□ -0.82
COL6A3-204ENST00000392003 BATF3Q9NR55 127 aa9.94□□□□□ -0.82
COL6A3-204ENST00000392003 FLRT1Q9NZU1 646 aa9.94□□□□□ -0.82
COL6A3-204ENST00000392003 STAP1Q9ULZ2 295 aa9.94□□□□□ -0.82
COL6A3-204ENST00000392003 SYNJ2BP-COX16A0A087WUM0 186 aa9.94□□□□□ -0.82
COL6A3-204ENST00000392003 HACD1B0YJ81 288 aa9.94□□□□□ -0.82
COL6A3-204ENST00000392003 ADCY6O43306 1168 aa9.94□□□□□ -0.82
COL6A3-204ENST00000392003 TPSB2P20231 275 aa9.94□□□□□ -0.82
COL6A3-204ENST00000392003 AMPD1P23109 780 aa9.94□□□□□ -0.82
COL6A3-204ENST00000392003 TARSP26639 723 aaKnown RBP9.94□□□□□ -0.82
COL6A3-204ENST00000392003 SERPINB9P50453 376 aa9.94□□□□□ -0.82
COL6A3-204ENST00000392003 PLOD1Q02809 727 aaPredicted RBP9.94□□□□□ -0.82
COL6A3-204ENST00000392003 SLC18A2Q05940 514 aa9.94□□□□□ -0.82
COL6A3-204ENST00000392003 TPSAB1Q15661 275 aa9.94□□□□□ -0.82
COL6A3-204ENST00000392003 MORN1Q5T089 497 aa9.94□□□□□ -0.82
COL6A3-204ENST00000392003 ARCQ7LC44 396 aa9.94□□□□□ -0.82
COL6A3-204ENST00000392003 HACE1Q8IYU2 909 aa9.94□□□□□ -0.82
COL6A3-204ENST00000392003 GSDMBQ8TAX9 411 aa9.94□□□□□ -0.82
COL6A3-204ENST00000392003 MZB1Q8WU39 189 aa9.94□□□□□ -0.82
COL6A3-204ENST00000392003 MTBPQ96DY7 904 aa9.94□□□□□ -0.82
COL6A3-204ENST00000392003 SERAC1Q96JX3 654 aa9.94□□□□□ -0.82
COL6A3-204ENST00000392003 CSPG4P5Q96PW8 444 aa9.94□□□□□ -0.82
COL6A3-204ENST00000392003 CXCL16Q9H2A7 254 aa9.94□□□□□ -0.82
COL6A3-204ENST00000392003 GDAP2Q9NXN4 497 aa9.94□□□□□ -0.82
COL6A3-204ENST00000392003 COX16Q9P0S2 106 aa9.94□□□□□ -0.82
COL6A3-204ENST00000392003 ZNF180Q9UJW8 692 aa9.94□□□□□ -0.82
COL6A3-204ENST00000392003 TRIM33Q9UPN9 1127 aa9.94□□□□□ -0.82
COL6A3-204ENST00000392003 TIMM22Q9Y584 194 aa9.94□□□□□ -0.82
COL6A3-204ENST00000392003 PLXNB2O15031 1838 aa9.94□□□□□ -0.82
COL6A3-204ENST00000392003 DPPA5A6NC42 116 aa9.93□□□□□ -0.82
COL6A3-204ENST00000392003 PIRO00625 290 aa9.93□□□□□ -0.82
COL6A3-204ENST00000392003 HNRNPCL1O60812 293 aaKnown RBP9.93□□□□□ -0.82
COL6A3-204ENST00000392003 LMO2P25791 158 aa9.93□□□□□ -0.82
COL6A3-204ENST00000392003 OVGP1Q12889 678 aa9.93□□□□□ -0.82
COL6A3-204ENST00000392003 CBX3Q13185 183 aa9.93□□□□□ -0.82
COL6A3-204ENST00000392003 CRHR2Q13324 411 aa9.93□□□□□ -0.82
COL6A3-204ENST00000392003 PRPF39Q86UA1 669 aaKnown RBP9.93□□□□□ -0.82
COL6A3-204ENST00000392003 CHSY1Q86X52 802 aa9.93□□□□□ -0.82
COL6A3-204ENST00000392003 FAM131BQ86XD5 332 aa9.93□□□□□ -0.82
COL6A3-204ENST00000392003 DEFB106AQ8N104 65 aa9.93□□□□□ -0.82
COL6A3-204ENST00000392003 CDKL2Q92772 493 aa9.93□□□□□ -0.82
COL6A3-204ENST00000392003 QKIQ96PU8 341 aaKnown RBP eCLIP9.93□□□□□ -0.82
COL6A3-204ENST00000392003 KCTD15Q96SI1 283 aaPredicted RBP9.93□□□□□ -0.82
COL6A3-204ENST00000392003 IRF2BPLQ9H1B7 796 aa9.93□□□□□ -0.82
COL6A3-204ENST00000392003 C12orf65Q9H3J6 166 aaKnown RBP9.93□□□□□ -0.82
COL6A3-204ENST00000392003 POPDC2Q9HBU9 364 aa9.93□□□□□ -0.82
COL6A3-204ENST00000392003 HAO1Q9UJM8 370 aa9.93□□□□□ -0.82
COL6A3-204ENST00000392003 TTLL3Q9Y4R7 772 aa9.93□□□□□ -0.82
COL6A3-204ENST00000392003 SCN1AP35498 2009 aa9.93□□□□□ -0.82
COL6A3-204ENST00000392003 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP9.93□□□□□ -0.82
COL6A3-204ENST00000392003 XPO1O14980 1071 aaKnown RBP9.93□□□□□ -0.82
COL6A3-204ENST00000392003 SUPT3HO75486 399 aa9.93□□□□□ -0.82
COL6A3-204ENST00000392003 PGK1P00558 417 aa9.93□□□□□ -0.82
COL6A3-204ENST00000392003 TFE3P19532 575 aaPredicted RBP9.93□□□□□ -0.82
COL6A3-204ENST00000392003 CCND1P24385 295 aa9.93□□□□□ -0.82
COL6A3-204ENST00000392003 MATKP42679 507 aa9.93□□□□□ -0.82
COL6A3-204ENST00000392003 MAGEA6P43360 314 aa9.93□□□□□ -0.82
COL6A3-204ENST00000392003 SERPINB4P48594 390 aa9.93□□□□□ -0.82
COL6A3-204ENST00000392003 ATXN1P54253 815 aaKnown RBP9.93□□□□□ -0.82
COL6A3-204ENST00000392003 FCGRTP55899 365 aa9.93□□□□□ -0.82
COL6A3-204ENST00000392003 SNX17Q15036 470 aa9.93□□□□□ -0.82
COL6A3-204ENST00000392003 DCAF6Q58WW2 860 aa9.93□□□□□ -0.82
COL6A3-204ENST00000392003 ATG16L1Q676U5 607 aa9.93□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms