RNA–Protein interactions for RNA: ENST00000380075.6

TRIM54-202, Transcript of tripartite motif containing 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM54, Length 1,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-202ENST00000380075 HTR3CQ8WXA8 447 aa22.23■■□□□ 1.15
TRIM54-202ENST00000380075 CFAP36Q96G28 342 aa22.23■■□□□ 1.15
TRIM54-202ENST00000380075 ZFP42Q96MM3 310 aa22.23■■□□□ 1.15
TRIM54-202ENST00000380075 ARHGEF4Q9NR80 690 aa22.23■■□□□ 1.15
TRIM54-202ENST00000380075 KLC4Q9NSK0 619 aa22.23■■□□□ 1.15
TRIM54-202ENST00000380075 ST3GAL5Q9UNP4 418 aa22.23■■□□□ 1.15
TRIM54-202ENST00000380075 A0A0A0MRY4 1105 aa22.22■■□□□ 1.15
TRIM54-202ENST00000380075 NBNO60934 754 aa22.22■■□□□ 1.15
TRIM54-202ENST00000380075 AVILO75366 819 aa22.22■■□□□ 1.15
TRIM54-202ENST00000380075 MAP3K6O95382 1288 aa22.22■■□□□ 1.15
TRIM54-202ENST00000380075 MLNP12872 115 aa22.22■■□□□ 1.15
TRIM54-202ENST00000380075 CSF2RAP15509 400 aa22.22■■□□□ 1.15
TRIM54-202ENST00000380075 RPL9P32969 192 aaKnown RBP22.22■■□□□ 1.15
TRIM54-202ENST00000380075 BNIP1Q12981 228 aa22.22■■□□□ 1.15
TRIM54-202ENST00000380075 MDH1BQ5I0G3 518 aa22.22■■□□□ 1.15
TRIM54-202ENST00000380075 FAXCQ5TGI0 409 aa22.22■■□□□ 1.15
TRIM54-202ENST00000380075 FAM47EQ6ZV65 393 aa22.22■■□□□ 1.15
TRIM54-202ENST00000380075 AGGF1Q8N302 714 aaeCLIP22.22■■□□□ 1.15
TRIM54-202ENST00000380075 TCP10LQ8TDR4 215 aa22.22■■□□□ 1.15
TRIM54-202ENST00000380075 APOPT1Q96IL0 206 aa22.22■■□□□ 1.15
TRIM54-202ENST00000380075 SPATA13Q96N96 652 aa22.22■■□□□ 1.15
TRIM54-202ENST00000380075 GRID1Q9ULK0 1009 aa22.22■■□□□ 1.15
TRIM54-202ENST00000380075 USH1CQ9Y6N9 552 aa22.22■■□□□ 1.15
TRIM54-202ENST00000380075 C9IYK1 514 aa22.21■■□□□ 1.15
TRIM54-202ENST00000380075 CLDN5O00501 218 aa22.21■■□□□ 1.15
TRIM54-202ENST00000380075 KRT37O76014 449 aa22.21■■□□□ 1.15
TRIM54-202ENST00000380075 METTL18O95568 372 aa22.21■■□□□ 1.15
TRIM54-202ENST00000380075 APOEP02649 317 aa22.21■■□□□ 1.15
TRIM54-202ENST00000380075 C1QAP02745 245 aa22.21■■□□□ 1.15
TRIM54-202ENST00000380075 FAM133BQ5BKY9 247 aaKnown RBP22.21■■□□□ 1.15
TRIM54-202ENST00000380075 OTUD1Q5VV17 481 aaPredicted RBP22.21■■□□□ 1.15
TRIM54-202ENST00000380075 CYS1Q717R9 158 aa22.21■■□□□ 1.15
TRIM54-202ENST00000380075 CCDC63Q8NA47 563 aa22.21■■□□□ 1.15
TRIM54-202ENST00000380075 GSTCDQ8NEC7 633 aa22.21■■□□□ 1.15
TRIM54-202ENST00000380075 RNF139Q8WU17 664 aa22.21■■□□□ 1.15
TRIM54-202ENST00000380075 ZNF75CPQ92670 426 aaPredicted RBP22.21■■□□□ 1.15
TRIM54-202ENST00000380075 NTAN1Q96AB6 310 aa22.21■■□□□ 1.15
TRIM54-202ENST00000380075 EBNA1BP2Q99848 306 aaKnown RBP22.21■■□□□ 1.15
TRIM54-202ENST00000380075 SYT15Q9BQS2 421 aa22.21■■□□□ 1.15
TRIM54-202ENST00000380075 CNGB3Q9NQW8 809 aa22.21■■□□□ 1.15
TRIM54-202ENST00000380075 EIF2B3Q9NR50 452 aaKnown RBP22.21■■□□□ 1.15
TRIM54-202ENST00000380075 RRN3Q9NYV6 651 aa22.21■■□□□ 1.15
TRIM54-202ENST00000380075 OPHN1O60890 802 aa22.21■■□□□ 1.15
TRIM54-202ENST00000380075 ACAT1P24752 427 aaKnown RBP22.21■■□□□ 1.15
TRIM54-202ENST00000380075 MLH1P40692 756 aa22.21■■□□□ 1.15
TRIM54-202ENST00000380075 SKIV2L2P42285 1042 aaKnown RBP22.21■■□□□ 1.15
TRIM54-202ENST00000380075 PDK1Q15118 436 aa22.21■■□□□ 1.15
TRIM54-202ENST00000380075 TMEM199Q8N511 208 aa22.21■■□□□ 1.15
TRIM54-202ENST00000380075 ZNF398Q8TD17 642 aa22.21■■□□□ 1.15
TRIM54-202ENST00000380075 VWCEQ96DN2 955 aa22.21■■□□□ 1.15
TRIM54-202ENST00000380075 KRT82Q9NSB4 513 aa22.21■■□□□ 1.15
TRIM54-202ENST00000380075 CDH9Q9ULB4 789 aa22.21■■□□□ 1.15
TRIM54-202ENST00000380075 RAD54BQ9Y620 910 aa22.21■■□□□ 1.15
TRIM54-202ENST00000380075 M0QYT0 321 aa22.2■■□□□ 1.14
TRIM54-202ENST00000380075 GPR182O15218 404 aa22.2■■□□□ 1.14
TRIM54-202ENST00000380075 LPXNO60711 386 aa22.2■■□□□ 1.14
TRIM54-202ENST00000380075 BEST1O76090 585 aa22.2■■□□□ 1.14
TRIM54-202ENST00000380075 SNRPAP09012 282 aaKnown RBP22.2■■□□□ 1.14
TRIM54-202ENST00000380075 ALDH3A1P30838 453 aa22.2■■□□□ 1.14
TRIM54-202ENST00000380075 GLUD2P49448 558 aa22.2■■□□□ 1.14
TRIM54-202ENST00000380075 TKTL1P51854 596 aa22.2■■□□□ 1.14
TRIM54-202ENST00000380075 DEUP1Q05D60 604 aa22.2■■□□□ 1.14
TRIM54-202ENST00000380075 LPIN1Q14693 890 aa22.2■■□□□ 1.14
TRIM54-202ENST00000380075 PAFAH1B3Q15102 231 aaKnown RBP22.2■■□□□ 1.14
TRIM54-202ENST00000380075 PRKD1Q15139 912 aaPredicted RBP22.2■■□□□ 1.14
TRIM54-202ENST00000380075 SYCP2LQ5T4T6 812 aa22.2■■□□□ 1.14
TRIM54-202ENST00000380075 CYB5D1Q6P9G0 228 aa22.2■■□□□ 1.14
TRIM54-202ENST00000380075 ZNF534Q76KX8 674 aa22.2■■□□□ 1.14
TRIM54-202ENST00000380075 DEFB128Q7Z7B8 93 aa22.2■■□□□ 1.14
TRIM54-202ENST00000380075 CHSY1Q86X52 802 aa22.2■■□□□ 1.14
TRIM54-202ENST00000380075 GSDMBQ8TAX9 411 aa22.2■■□□□ 1.14
TRIM54-202ENST00000380075 MTBPQ96DY7 904 aa22.2■■□□□ 1.14
TRIM54-202ENST00000380075 SIGLEC10Q96LC7 697 aa22.2■■□□□ 1.14
TRIM54-202ENST00000380075 CRTAC1Q9NQ79 661 aa22.2■■□□□ 1.14
TRIM54-202ENST00000380075 PPP1R12AO14974 1030 aaPredicted RBP22.19■■□□□ 1.14
TRIM54-202ENST00000380075 PAX3P23760 479 aa22.19■■□□□ 1.14
TRIM54-202ENST00000380075 NEK3P51956 506 aa22.19■■□□□ 1.14
TRIM54-202ENST00000380075 MAP3K7CLP57077 242 aa22.19■■□□□ 1.14
TRIM54-202ENST00000380075 SETDB1Q15047 1291 aa22.19■■□□□ 1.14
TRIM54-202ENST00000380075 ANKRD20A2Q5SQ80 823 aa22.19■■□□□ 1.14
TRIM54-202ENST00000380075 ANKRD20A1Q5TYW2 823 aa22.19■■□□□ 1.14
TRIM54-202ENST00000380075 ANKRD20A3Q5VUR7 823 aa22.19■■□□□ 1.14
TRIM54-202ENST00000380075 PDZD4Q76G19 769 aaPredicted RBP22.19■■□□□ 1.14
TRIM54-202ENST00000380075 MRPL10Q7Z7H8 261 aaKnown RBP22.19■■□□□ 1.14
TRIM54-202ENST00000380075 FAM35AQ86V20 835 aa22.19■■□□□ 1.14
TRIM54-202ENST00000380075 PYROXD2Q8N2H3 581 aa22.19■■□□□ 1.14
TRIM54-202ENST00000380075 GAD1Q99259 594 aa22.19■■□□□ 1.14
TRIM54-202ENST00000380075 AGO3Q9H9G7 860 aaKnown RBP22.19■■□□□ 1.14
TRIM54-202ENST00000380075 DCTN3O75935 186 aa22.19■■□□□ 1.14
TRIM54-202ENST00000380075 DHRS4L1P0CG22 281 aa22.19■■□□□ 1.14
TRIM54-202ENST00000380075 ADRA1DP25100 572 aa22.19■■□□□ 1.14
TRIM54-202ENST00000380075 PCSK1P29120 753 aa22.19■■□□□ 1.14
TRIM54-202ENST00000380075 ZNF135P52742 658 aaPredicted RBP22.19■■□□□ 1.14
TRIM54-202ENST00000380075 DAOAP59103 153 aa22.19■■□□□ 1.14
TRIM54-202ENST00000380075 SCAPQ12770 1279 aa22.19■■□□□ 1.14
TRIM54-202ENST00000380075 RAB41Q5JT25 222 aa22.19■■□□□ 1.14
TRIM54-202ENST00000380075 KIAA0319Q5VV43 1072 aa22.19■■□□□ 1.14
TRIM54-202ENST00000380075 FYB2Q5VWT5 728 aa22.19■■□□□ 1.14
TRIM54-202ENST00000380075 DSTYKQ6XUX3 929 aa22.19■■□□□ 1.14
TRIM54-202ENST00000380075 SH2D5Q6ZV89 423 aa22.19■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms