RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 SLC5A9Q2M3M2 681 aa16.86■□□□□ 0.29
SDC4-201ENST00000372733 GRAMD1BQ3KR37 738 aa16.86■□□□□ 0.29
SDC4-201ENST00000372733 MMEL1Q495T6 779 aa16.86■□□□□ 0.29
SDC4-201ENST00000372733 PMF1Q6P1K2 205 aa16.86■□□□□ 0.29
SDC4-201ENST00000372733 ISLR2Q6UXK2 745 aa16.86■□□□□ 0.29
SDC4-201ENST00000372733 NETO2Q8NC67 525 aa16.86■□□□□ 0.29
SDC4-201ENST00000372733 HPDLQ96IR7 371 aa16.86■□□□□ 0.29
SDC4-201ENST00000372733 NDNQ99608 321 aa16.86■□□□□ 0.29
SDC4-201ENST00000372733 UBE2OQ9C0C9 1292 aaKnown RBP16.86■□□□□ 0.29
SDC4-201ENST00000372733 DHX35Q9H5Z1 703 aaKnown RBP16.86■□□□□ 0.29
SDC4-201ENST00000372733 DNAJC28Q9NX36 388 aa16.86■□□□□ 0.29
SDC4-201ENST00000372733 DPYSL4O14531 572 aa16.86■□□□□ 0.29
SDC4-201ENST00000372733 ZNF195O14628 629 aa16.86■□□□□ 0.29
SDC4-201ENST00000372733 DCXO43602 365 aa16.86■□□□□ 0.29
SDC4-201ENST00000372733 OR6B1O95007 311 aa16.86■□□□□ 0.29
SDC4-201ENST00000372733 SEMA5AQ13591 1074 aa16.86■□□□□ 0.29
SDC4-201ENST00000372733 ITGA9Q13797 1035 aa16.86■□□□□ 0.29
SDC4-201ENST00000372733 PDK3Q15120 406 aa16.86■□□□□ 0.29
SDC4-201ENST00000372733 STEAP4Q687X5 459 aa16.86■□□□□ 0.29
SDC4-201ENST00000372733 CATSPERGQ6ZRH7 1159 aa16.86■□□□□ 0.29
SDC4-201ENST00000372733 SATL1Q86VE3 508 aa16.86■□□□□ 0.29
SDC4-201ENST00000372733 DNERQ8NFT8 737 aa16.86■□□□□ 0.29
SDC4-201ENST00000372733 SEPT1Q8WYJ6 367 aa16.86■□□□□ 0.29
SDC4-201ENST00000372733 PGLYRP2Q96PD5 576 aa16.86■□□□□ 0.29
SDC4-201ENST00000372733 QKIQ96PU8 341 aaKnown RBP eCLIP16.86■□□□□ 0.29
SDC4-201ENST00000372733 PPP1R16BQ96T49 567 aa16.86■□□□□ 0.29
SDC4-201ENST00000372733 VCX3BQ9H321 246 aa16.86■□□□□ 0.29
SDC4-201ENST00000372733 FZD8Q9H461 694 aa16.86■□□□□ 0.29
SDC4-201ENST00000372733 MAN1C1Q9NR34 630 aa16.86■□□□□ 0.29
SDC4-201ENST00000372733 TMEM216Q9P0N5 145 aa16.86■□□□□ 0.29
SDC4-201ENST00000372733 H3BNX3 289 aa16.85■□□□□ 0.29
SDC4-201ENST00000372733 F7P08709 466 aaPredicted RBP16.85■□□□□ 0.29
SDC4-201ENST00000372733 STAG3L1P0CL83 205 aa16.85■□□□□ 0.29
SDC4-201ENST00000372733 VAV1P15498 845 aa16.85■□□□□ 0.29
SDC4-201ENST00000372733 STILQ15468 1287 aa16.85■□□□□ 0.29
SDC4-201ENST00000372733 LCLAT1Q6UWP7 414 aa16.85■□□□□ 0.29
SDC4-201ENST00000372733 SAMD7Q7Z3H4 446 aa16.85■□□□□ 0.29
SDC4-201ENST00000372733 SCUBE3Q8IX30 993 aa16.85■□□□□ 0.29
SDC4-201ENST00000372733 ACMSDQ8TDX5 336 aa16.85■□□□□ 0.29
SDC4-201ENST00000372733 NAT14Q8WUY8 206 aa16.85■□□□□ 0.29
SDC4-201ENST00000372733 C12orf42Q96LP6 360 aa16.85■□□□□ 0.29
SDC4-201ENST00000372733 B3GNT5Q9BYG0 378 aa16.85■□□□□ 0.29
SDC4-201ENST00000372733 CYP3A43Q9HB55 503 aa16.85■□□□□ 0.29
SDC4-201ENST00000372733 IFT122Q9HBG6 1241 aa16.85■□□□□ 0.29
SDC4-201ENST00000372733 VCX3AQ9NNX9 186 aa16.85■□□□□ 0.29
SDC4-201ENST00000372733 BARX2Q9UMQ3 279 aaPredicted RBP16.85■□□□□ 0.29
SDC4-201ENST00000372733 SSC5DA1L4H1 1573 aa16.85■□□□□ 0.29
SDC4-201ENST00000372733 ZBTB14O43829 449 aa16.85■□□□□ 0.29
SDC4-201ENST00000372733 ITGA2BP08514 1039 aa16.85■□□□□ 0.29
SDC4-201ENST00000372733 PABPC4LP0CB38 370 aaKnown RBP16.85■□□□□ 0.29
SDC4-201ENST00000372733 MGAT1P26572 445 aa16.85■□□□□ 0.29
SDC4-201ENST00000372733 MBTD1Q05BQ5 628 aa16.85■□□□□ 0.29
SDC4-201ENST00000372733 USP4Q13107 963 aa16.85■□□□□ 0.29
SDC4-201ENST00000372733 GRM2Q14416 872 aa16.85■□□□□ 0.29
SDC4-201ENST00000372733 STXBP5Q5T5C0 1151 aa16.85■□□□□ 0.29
SDC4-201ENST00000372733 ARHGAP22Q7Z5H3 698 aa16.85■□□□□ 0.29
SDC4-201ENST00000372733 B4GALNT2Q8NHY0 566 aa16.85■□□□□ 0.29
SDC4-201ENST00000372733 KHSRPQ92945 711 aaKnown RBP eCLIP16.85■□□□□ 0.29
SDC4-201ENST00000372733 ATP2A3Q93084 1043 aa16.85■□□□□ 0.29
SDC4-201ENST00000372733 CMTM5Q96DZ9 223 aa16.85■□□□□ 0.29
SDC4-201ENST00000372733 FAM167AQ96KS9 214 aa16.85■□□□□ 0.29
SDC4-201ENST00000372733 HAPLN3Q96S86 360 aa16.85■□□□□ 0.29
SDC4-201ENST00000372733 TBCBQ99426 244 aa16.85■□□□□ 0.29
SDC4-201ENST00000372733 CEP41Q9BYV8 373 aa16.85■□□□□ 0.29
SDC4-201ENST00000372733 MIS12Q9H081 205 aa16.85■□□□□ 0.29
SDC4-201ENST00000372733 SLC4A7Q9Y6M7 1214 aa16.85■□□□□ 0.29
SDC4-201ENST00000372733 E9PBE3 544 aa16.84■□□□□ 0.29
SDC4-201ENST00000372733 MDM4O15151 490 aa16.84■□□□□ 0.29
SDC4-201ENST00000372733 KLHL41O60662 606 aa16.84■□□□□ 0.29
SDC4-201ENST00000372733 ALDH1A2O94788 518 aa16.84■□□□□ 0.29
SDC4-201ENST00000372733 PGM3O95394 542 aa16.84■□□□□ 0.29
SDC4-201ENST00000372733 CD1EP15812 388 aa16.84■□□□□ 0.29
SDC4-201ENST00000372733 ABCE1P61221 599 aaKnown RBP16.84■□□□□ 0.29
SDC4-201ENST00000372733 PDCD2Q16342 344 aaPredicted RBP16.84■□□□□ 0.29
SDC4-201ENST00000372733 HEATR6Q6AI08 1181 aaKnown RBP16.84■□□□□ 0.29
SDC4-201ENST00000372733 CES3Q6UWW8 571 aa16.84■□□□□ 0.29
SDC4-201ENST00000372733 CMC1Q7Z7K0 106 aa16.84■□□□□ 0.29
SDC4-201ENST00000372733 TTC30AQ86WT1 665 aa16.84■□□□□ 0.29
SDC4-201ENST00000372733 GCNAQ96QF7 691 aa16.84■□□□□ 0.29
SDC4-201ENST00000372733 FAM49BQ9NUQ9 324 aa16.84■□□□□ 0.29
SDC4-201ENST00000372733 COPG2Q9UBF2 871 aa16.84■□□□□ 0.29
SDC4-201ENST00000372733 HACL1Q9UJ83 578 aa16.84■□□□□ 0.29
SDC4-201ENST00000372733 C15orf38-AP3S2A0A0A6YYH1 394 aa16.84■□□□□ 0.29
SDC4-201ENST00000372733 IGKV6-21A0A0C4DH24 114 aa16.84■□□□□ 0.29
SDC4-201ENST00000372733 CAPN8A6NHC0 703 aa16.84■□□□□ 0.29
SDC4-201ENST00000372733 ARIH2O95376 493 aa16.84■□□□□ 0.29
SDC4-201ENST00000372733 RALBP11234 206 aa16.84■□□□□ 0.29
SDC4-201ENST00000372733 HSDL1Q3SXM5 330 aa16.84■□□□□ 0.29
SDC4-201ENST00000372733 ANKRD20A4Q4UJ75 823 aa16.84■□□□□ 0.29
SDC4-201ENST00000372733 ARPINQ7Z6K5 226 aa16.84■□□□□ 0.29
SDC4-201ENST00000372733 FBXW8Q8N3Y1 598 aa16.84■□□□□ 0.29
SDC4-201ENST00000372733 GCOM2Q9BZD3 368 aaPredicted RBP16.84■□□□□ 0.29
SDC4-201ENST00000372733 TNFSF13BQ9Y275 285 aa16.84■□□□□ 0.29
SDC4-201ENST00000372733 INPP5FQ9Y2H2 1132 aa16.84■□□□□ 0.29
SDC4-201ENST00000372733 COMMD3-BMI1R4GMX3 469 aa16.84■□□□□ 0.29
SDC4-201ENST00000372733 PIM1P11309 404 aaPredicted RBP16.83■□□□□ 0.29
SDC4-201ENST00000372733 COX4I1P13073 169 aa16.83■□□□□ 0.29
SDC4-201ENST00000372733 ALOX15P16050 662 aaPredicted RBP16.83■□□□□ 0.29
SDC4-201ENST00000372733 DEUP1Q05D60 604 aa16.83■□□□□ 0.29
SDC4-201ENST00000372733 LSAMPQ13449 338 aa16.83■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms