RNA–Protein interactions for RNA: ENST00000360001.10

SDF4-202, Transcript of stromal cell derived factor 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SDF4, Length 1,956 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-202ENST00000360001 TRIP4Q15650 581 aaPredicted RBP23.96■■□□□ 1.43
SDF4-202ENST00000360001 ZDHHC24Q6UX98 284 aa23.96■■□□□ 1.43
SDF4-202ENST00000360001 MIB1Q86YT6 1006 aa23.96■■□□□ 1.43
SDF4-202ENST00000360001 GDAP1L1Q96MZ0 367 aa23.96■■□□□ 1.43
SDF4-202ENST00000360001 EPAS1Q99814 870 aa23.96■■□□□ 1.43
SDF4-202ENST00000360001 ZDHHC18Q9NUE0 388 aa23.96■■□□□ 1.43
SDF4-202ENST00000360001 DTLQ9NZJ0 730 aa23.96■■□□□ 1.43
SDF4-202ENST00000360001 XPO7Q9UIA9 1087 aaKnown RBP23.96■■□□□ 1.43
SDF4-202ENST00000360001 SGK1O00141 431 aa23.96■■□□□ 1.43
SDF4-202ENST00000360001 MAP3K6O95382 1288 aa23.96■■□□□ 1.43
SDF4-202ENST00000360001 GDF10P55107 478 aa23.96■■□□□ 1.43
SDF4-202ENST00000360001 TAF12Q16514 161 aa23.96■■□□□ 1.43
SDF4-202ENST00000360001 ARTNQ5T4W7 220 aa23.96■■□□□ 1.43
SDF4-202ENST00000360001 UNC45BQ8IWX7 931 aa23.96■■□□□ 1.43
SDF4-202ENST00000360001 CCDC89Q8N998 374 aa23.96■■□□□ 1.43
SDF4-202ENST00000360001 CDK5RAP1Q96SZ6 601 aaKnown RBP23.96■■□□□ 1.43
SDF4-202ENST00000360001 IGLV3-27P01718 113 aa23.95■■□□□ 1.42
SDF4-202ENST00000360001 RB1P06400 928 aa23.95■■□□□ 1.42
SDF4-202ENST00000360001 ZSCAN5DPP0CG00 497 aa23.95■■□□□ 1.42
SDF4-202ENST00000360001 SLC2A3P11169 496 aa23.95■■□□□ 1.42
SDF4-202ENST00000360001 ETS1P14921 441 aa23.95■■□□□ 1.42
SDF4-202ENST00000360001 ERCC2P18074 760 aa23.95■■□□□ 1.42
SDF4-202ENST00000360001 CAMK1Q14012 370 aa23.95■■□□□ 1.42
SDF4-202ENST00000360001 B4GALNT4Q76KP1 1039 aa23.95■■□□□ 1.42
SDF4-202ENST00000360001 CAVIN3Q969G5 261 aa23.95■■□□□ 1.42
SDF4-202ENST00000360001 FUT8Q9BYC5 575 aa23.95■■□□□ 1.42
SDF4-202ENST00000360001 SIK2Q9H0K1 926 aa23.95■■□□□ 1.42
SDF4-202ENST00000360001 TRPM5Q9NZQ8 1165 aa23.95■■□□□ 1.42
SDF4-202ENST00000360001 NEU3Q9UQ49 428 aa23.95■■□□□ 1.42
SDF4-202ENST00000360001 H7C0C1 242 aa23.94■■□□□ 1.42
SDF4-202ENST00000360001 GRM6O15303 877 aa23.94■■□□□ 1.42
SDF4-202ENST00000360001 MOCS2O96007 188 aaPredicted RBP23.94■■□□□ 1.42
SDF4-202ENST00000360001 ATP5OP48047 213 aa23.94■■□□□ 1.42
SDF4-202ENST00000360001 VPS41P49754 854 aa23.94■■□□□ 1.42
SDF4-202ENST00000360001 PAFAH1B3Q15102 231 aaKnown RBP23.94■■□□□ 1.42
SDF4-202ENST00000360001 DARS2Q6PI48 645 aaKnown RBP23.94■■□□□ 1.42
SDF4-202ENST00000360001 RANBP2P49792 3224 aaKnown RBP23.94■■□□□ 1.42
SDF4-202ENST00000360001 SLC12A8A0AV02 714 aa23.94■■□□□ 1.42
SDF4-202ENST00000360001 TP73O15350 636 aa23.94■■□□□ 1.42
SDF4-202ENST00000360001 MFSD11O43934 449 aa23.94■■□□□ 1.42
SDF4-202ENST00000360001 ADCY8P40145 1251 aa23.94■■□□□ 1.42
SDF4-202ENST00000360001 PLTPP55058 493 aa23.94■■□□□ 1.42
SDF4-202ENST00000360001 HECTD3Q5T447 861 aa23.94■■□□□ 1.42
SDF4-202ENST00000360001 MANEALQ5VSG8 457 aa23.94■■□□□ 1.42
SDF4-202ENST00000360001 FBXO25Q8TCJ0 367 aa23.94■■□□□ 1.42
SDF4-202ENST00000360001 RSAD2Q8WXG1 361 aa23.94■■□□□ 1.42
SDF4-202ENST00000360001 SNF8Q96H20 258 aa23.94■■□□□ 1.42
SDF4-202ENST00000360001 OLFM3Q96PB7 478 aa23.94■■□□□ 1.42
SDF4-202ENST00000360001 PCDH9Q9HC56 1237 aa23.94■■□□□ 1.42
SDF4-202ENST00000360001 WHRNQ9P202 907 aa23.94■■□□□ 1.42
SDF4-202ENST00000360001 HS3ST4Q9Y661 456 aa23.94■■□□□ 1.42
SDF4-202ENST00000360001 ANAPC1Q9H1A4 1944 aa23.93■■□□□ 1.42
SDF4-202ENST00000360001 IFNB1P01574 187 aa23.93■■□□□ 1.42
SDF4-202ENST00000360001 ATP5C1P36542 298 aaKnown RBP23.93■■□□□ 1.42
SDF4-202ENST00000360001 XRCC4Q13426 336 aa23.93■■□□□ 1.42
SDF4-202ENST00000360001 KLHDC10Q6PID8 442 aa23.93■■□□□ 1.42
SDF4-202ENST00000360001 TMEM150AQ86TG1 271 aa23.93■■□□□ 1.42
SDF4-202ENST00000360001 TADA2BQ86TJ2 420 aa23.93■■□□□ 1.42
SDF4-202ENST00000360001 ITIH5Q86UX2 942 aa23.93■■□□□ 1.42
SDF4-202ENST00000360001 FAM71DQ8N9W8 422 aa23.93■■□□□ 1.42
SDF4-202ENST00000360001 KREMEN2Q8NCW0 462 aa23.93■■□□□ 1.42
SDF4-202ENST00000360001 CCHCR1Q8TD31 782 aa23.93■■□□□ 1.42
SDF4-202ENST00000360001 ART4Q93070 314 aa23.93■■□□□ 1.42
SDF4-202ENST00000360001 USP29Q9HBJ7 922 aa23.93■■□□□ 1.42
SDF4-202ENST00000360001 ZNF334Q9HCZ1 680 aaPredicted RBP23.93■■□□□ 1.42
SDF4-202ENST00000360001 UXTQ9UBK9 157 aaPredicted RBP23.93■■□□□ 1.42
SDF4-202ENST00000360001 SASH3O75995 380 aa23.92■■□□□ 1.42
SDF4-202ENST00000360001 APOEP02649 317 aa23.92■■□□□ 1.42
SDF4-202ENST00000360001 EPHB2P29323 1055 aa23.92■■□□□ 1.42
SDF4-202ENST00000360001 IRS1P35568 1242 aa23.92■■□□□ 1.42
SDF4-202ENST00000360001 TNNT3P45378 269 aaPredicted RBP23.92■■□□□ 1.42
SDF4-202ENST00000360001 PPP3CCP48454 512 aa23.92■■□□□ 1.42
SDF4-202ENST00000360001 RING1Q06587 406 aa23.92■■□□□ 1.42
SDF4-202ENST00000360001 PIK3R6Q5UE93 754 aa23.92■■□□□ 1.42
SDF4-202ENST00000360001 CCDC149Q6ZUS6 474 aa23.92■■□□□ 1.42
SDF4-202ENST00000360001 DNMT3LQ9UJW3 386 aa23.92■■□□□ 1.42
SDF4-202ENST00000360001 ASB3Q9Y575 518 aa23.92■■□□□ 1.42
SDF4-202ENST00000360001 PCDHA11Q9Y5I1 949 aa23.92■■□□□ 1.42
SDF4-202ENST00000360001 BCLAF3A2AJT9 711 aaKnown RBP23.92■■□□□ 1.42
SDF4-202ENST00000360001 COCHO43405 550 aa23.92■■□□□ 1.42
SDF4-202ENST00000360001 GLUD1P00367 558 aa23.92■■□□□ 1.42
SDF4-202ENST00000360001 C8AP07357 584 aa23.92■■□□□ 1.42
SDF4-202ENST00000360001 HOXC13P31276 330 aa23.92■■□□□ 1.42
SDF4-202ENST00000360001 STIP1P31948 543 aaKnown RBP23.92■■□□□ 1.42
SDF4-202ENST00000360001 TUBP50607 506 aa23.92■■□□□ 1.42
SDF4-202ENST00000360001 MLLT6P55198 1093 aaPredicted RBP23.92■■□□□ 1.42
SDF4-202ENST00000360001 NRG1Q02297 640 aaPredicted RBP23.92■■□□□ 1.42
SDF4-202ENST00000360001 CCDC33Q8N5R6 958 aa23.92■■□□□ 1.42
SDF4-202ENST00000360001 LRRN4Q8WUT4 740 aa23.92■■□□□ 1.42
SDF4-202ENST00000360001 C1orf74Q96LT6 269 aa23.92■■□□□ 1.42
SDF4-202ENST00000360001 TGS1Q96RS0 853 aaKnown RBP23.92■■□□□ 1.42
SDF4-202ENST00000360001 YBX2Q9Y2T7 364 aaKnown RBP23.92■■□□□ 1.42
SDF4-202ENST00000360001 HBS1LQ9Y450 684 aaKnown RBP23.92■■□□□ 1.42
SDF4-202ENST00000360001 HMBSP08397 361 aa23.91■■□□□ 1.42
SDF4-202ENST00000360001 SRGAP2BP0DMP2 458 aa23.91■■□□□ 1.42
SDF4-202ENST00000360001 ITIH2P19823 946 aa23.91■■□□□ 1.42
SDF4-202ENST00000360001 HTR7P34969 479 aa23.91■■□□□ 1.42
SDF4-202ENST00000360001 CLCN4P51793 760 aa23.91■■□□□ 1.42
SDF4-202ENST00000360001 KPNA1P52294 538 aaPredicted RBP23.91■■□□□ 1.42
SDF4-202ENST00000360001 CALCOCO2Q13137 446 aa23.91■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms