RNA–Protein interactions for RNA: ENST00000358181.8

CHD3-202, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CHD3, Length 7,286 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-202ENST00000358181 SCP2P22307 547 aa9.99□□□□□ -0.81
CHD3-202ENST00000358181 RAB2AP61019 212 aa9.99□□□□□ -0.81
CHD3-202ENST00000358181 NCOA4Q13772 614 aa9.99□□□□□ -0.81
CHD3-202ENST00000358181 SMCO1Q147U7 214 aa9.99□□□□□ -0.81
CHD3-202ENST00000358181 DDR2Q16832 855 aa9.99□□□□□ -0.81
CHD3-202ENST00000358181 TTC39BQ5VTQ0 682 aaPredicted RBP9.99□□□□□ -0.81
CHD3-202ENST00000358181 KCTD14Q9BQ13 255 aaPredicted RBP9.99□□□□□ -0.81
CHD3-202ENST00000358181 PI4K2AQ9BTU6 479 aa9.99□□□□□ -0.81
CHD3-202ENST00000358181 RASSF1Q9NS23 344 aa9.99□□□□□ -0.81
CHD3-202ENST00000358181 HERC5Q9UII4 1024 aaKnown RBP9.99□□□□□ -0.81
CHD3-202ENST00000358181 TMEM5Q9Y2B1 443 aa9.99□□□□□ -0.81
CHD3-202ENST00000358181 PIK3R1P27986 724 aa9.99□□□□□ -0.81
CHD3-202ENST00000358181 NTSP30990 170 aa9.99□□□□□ -0.81
CHD3-202ENST00000358181 PTGER2P43116 358 aa9.99□□□□□ -0.81
CHD3-202ENST00000358181 FOXM1Q08050 763 aa9.99□□□□□ -0.81
CHD3-202ENST00000358181 BAATQ14032 418 aaPredicted RBP9.99□□□□□ -0.81
CHD3-202ENST00000358181 AP5B1Q2VPB7 878 aa9.99□□□□□ -0.81
CHD3-202ENST00000358181 SPANXN2Q5MJ10 180 aa9.99□□□□□ -0.81
CHD3-202ENST00000358181 EID3Q8N140 333 aa9.99□□□□□ -0.81
CHD3-202ENST00000358181 TBC1D16Q8TBP0 767 aa9.99□□□□□ -0.81
CHD3-202ENST00000358181 ARHGEF26Q96DR7 871 aa9.99□□□□□ -0.81
CHD3-202ENST00000358181 CBWD1Q9BRT8 395 aa9.99□□□□□ -0.81
CHD3-202ENST00000358181 MGAT4AQ9UM21 535 aa9.99□□□□□ -0.81
CHD3-202ENST00000358181 AKAP8O43823 692 aaKnown RBP9.99□□□□□ -0.81
CHD3-202ENST00000358181 ALDH2P05091 517 aa9.99□□□□□ -0.81
CHD3-202ENST00000358181 NFKB1P19838 968 aa9.99□□□□□ -0.81
CHD3-202ENST00000358181 ZNF200P98182 395 aaPredicted RBP9.99□□□□□ -0.81
CHD3-202ENST00000358181 CAV1Q03135 178 aa9.99□□□□□ -0.81
CHD3-202ENST00000358181 FAPQ12884 760 aa9.99□□□□□ -0.81
CHD3-202ENST00000358181 NEK5Q6P3R8 708 aa9.99□□□□□ -0.81
CHD3-202ENST00000358181 FBXO38Q6PIJ6 1188 aa9.99□□□□□ -0.81
CHD3-202ENST00000358181 KCNV1Q6PIU1 500 aa9.99□□□□□ -0.81
CHD3-202ENST00000358181 DGLUCYQ7Z3D6 616 aa9.99□□□□□ -0.81
CHD3-202ENST00000358181 FAM71DQ8N9W8 422 aa9.99□□□□□ -0.81
CHD3-202ENST00000358181 PPP1R10Q96QC0 940 aaKnown RBP9.99□□□□□ -0.81
CHD3-202ENST00000358181 DDX47Q9H0S4 455 aaKnown RBP9.99□□□□□ -0.81
CHD3-202ENST00000358181 RNF208Q9H0X6 261 aa9.99□□□□□ -0.81
CHD3-202ENST00000358181 DPP3Q9NY33 737 aa9.99□□□□□ -0.81
CHD3-202ENST00000358181 LCMT1Q9UIC8 334 aa9.99□□□□□ -0.81
CHD3-202ENST00000358181 ATMINO43313 823 aaPredicted RBP9.98□□□□□ -0.81
CHD3-202ENST00000358181 XYLBO75191 536 aa9.98□□□□□ -0.81
CHD3-202ENST00000358181 ATP5HO75947 161 aa9.98□□□□□ -0.81
CHD3-202ENST00000358181 LGALS3BPQ08380 585 aa9.98□□□□□ -0.81
CHD3-202ENST00000358181 SQLEQ14534 574 aa9.98□□□□□ -0.81
CHD3-202ENST00000358181 TMEM26Q6ZUK4 368 aa9.98□□□□□ -0.81
CHD3-202ENST00000358181 ZNF248Q8NDW4 579 aa9.98□□□□□ -0.81
CHD3-202ENST00000358181 ZKSCAN4Q969J2 545 aaPredicted RBP9.98□□□□□ -0.81
CHD3-202ENST00000358181 ZCCHC17Q9NP64 241 aaKnown RBP9.98□□□□□ -0.81
CHD3-202ENST00000358181 MYL12BO14950 172 aa9.98□□□□□ -0.81
CHD3-202ENST00000358181 GET4Q7L5D6 327 aaPredicted RBP9.98□□□□□ -0.81
CHD3-202ENST00000358181 THRSPQ92748 146 aa9.98□□□□□ -0.81
CHD3-202ENST00000358181 ZNF285Q96NJ3 590 aa9.98□□□□□ -0.81
CHD3-202ENST00000358181 NT5C1AQ9BXI3 368 aa9.98□□□□□ -0.81
CHD3-202ENST00000358181 CYB561D2O14569 222 aa9.98□□□□□ -0.81
CHD3-202ENST00000358181 ZNF286BP0CG31 522 aa9.98□□□□□ -0.81
CHD3-202ENST00000358181 GSTM5P46439 218 aa9.98□□□□□ -0.81
CHD3-202ENST00000358181 DNASE1L1P49184 302 aa9.98□□□□□ -0.81
CHD3-202ENST00000358181 TAP1Q03518 808 aa9.98□□□□□ -0.81
CHD3-202ENST00000358181 PPP1R15BQ5SWA1 713 aa9.98□□□□□ -0.81
CHD3-202ENST00000358181 DHX40Q8IX18 779 aaKnown RBP9.98□□□□□ -0.81
CHD3-202ENST00000358181 FAM98AQ8NCA5 519 aaKnown RBP9.98□□□□□ -0.81
CHD3-202ENST00000358181 ACTR8Q9H981 624 aa9.98□□□□□ -0.81
CHD3-202ENST00000358181 MBD2Q9UBB5 411 aa9.98□□□□□ -0.81
CHD3-202ENST00000358181 BAIAP3O94812 1187 aa9.98□□□□□ -0.81
CHD3-202ENST00000358181 DNAL1Q4LDG9 190 aa9.98□□□□□ -0.81
CHD3-202ENST00000358181 ARMC3Q5W041 872 aa9.98□□□□□ -0.81
CHD3-202ENST00000358181 MFSD7Q6UXD7 560 aa9.98□□□□□ -0.81
CHD3-202ENST00000358181 CRYL1Q9Y2S2 319 aa9.98□□□□□ -0.81
CHD3-202ENST00000358181 PDS5AQ29RF7 1337 aaKnown RBP9.98□□□□□ -0.81
CHD3-202ENST00000358181 hCG_1984214I3L0E3 225 aa9.98□□□□□ -0.81
CHD3-202ENST00000358181 SSNA1O43805 119 aa9.98□□□□□ -0.81
CHD3-202ENST00000358181 MYBL2P10244 700 aa9.98□□□□□ -0.81
CHD3-202ENST00000358181 GCLCP48506 637 aaPredicted RBP9.98□□□□□ -0.81
CHD3-202ENST00000358181 CCT3P49368 545 aaKnown RBP9.98□□□□□ -0.81
CHD3-202ENST00000358181 KRR1Q13601 381 aaKnown RBP9.98□□□□□ -0.81
CHD3-202ENST00000358181 KNOP1Q1ED39 458 aaKnown RBP9.98□□□□□ -0.81
CHD3-202ENST00000358181 PUS10Q3MIT2 529 aaKnown RBP9.98□□□□□ -0.81
CHD3-202ENST00000358181 CLEC4GQ6UXB4 293 aa9.98□□□□□ -0.81
CHD3-202ENST00000358181 C2orf73Q8N5S3 287 aaPredicted RBP9.98□□□□□ -0.81
CHD3-202ENST00000358181 ZNF713Q8N859 430 aaPredicted RBP9.98□□□□□ -0.81
CHD3-202ENST00000358181 SUN3Q8TAQ9 357 aa9.98□□□□□ -0.81
CHD3-202ENST00000358181 USP13Q92995 863 aaPredicted RBP9.98□□□□□ -0.81
CHD3-202ENST00000358181 SEPHS2Q99611 448 aa9.98□□□□□ -0.81
CHD3-202ENST00000358181 AHSPQ9NZD4 102 aa9.98□□□□□ -0.81
CHD3-202ENST00000358181 DPP7Q9UHL4 492 aa9.98□□□□□ -0.81
CHD3-202ENST00000358181 PHF24Q9UPV7 400 aa9.98□□□□□ -0.81
CHD3-202ENST00000358181 DNAJC16Q9Y2G8 782 aa9.98□□□□□ -0.81
CHD3-202ENST00000358181 PCDHGA6Q9Y5G7 932 aa9.98□□□□□ -0.81
CHD3-202ENST00000358181 PCDHA10Q9Y5I2 948 aa9.98□□□□□ -0.81
CHD3-202ENST00000358181 INMTO95050 263 aa9.98□□□□□ -0.81
CHD3-202ENST00000358181 GPD1P21695 349 aa9.98□□□□□ -0.81
CHD3-202ENST00000358181 NT5C2P49902 561 aa9.98□□□□□ -0.81
CHD3-202ENST00000358181 STX5Q13190 355 aa9.98□□□□□ -0.81
CHD3-202ENST00000358181 FAM83EQ2M2I3 478 aa9.98□□□□□ -0.81
CHD3-202ENST00000358181 SLC22A8Q8TCC7 542 aa9.98□□□□□ -0.81
CHD3-202ENST00000358181 EEF1AKMT1Q8WVE0 214 aa9.98□□□□□ -0.81
CHD3-202ENST00000358181 RADILQ96JH8 1075 aa9.98□□□□□ -0.81
CHD3-202ENST00000358181 QKIQ96PU8 341 aaKnown RBP eCLIP9.98□□□□□ -0.814e-12■■■■■ 71
CHD3-202ENST00000358181 WNT8AQ9H1J5 351 aa9.98□□□□□ -0.81
CHD3-202ENST00000358181 CMTM6Q9NX76 183 aa9.98□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms