RNA–Protein interactions for RNA: ENST00000355430.4

COLCA1-201, Transcript of colorectal cancer associated 1, humanhuman

TSL 1 (best)

Gene COLCA1, Length 5,442 nt, Biotype antisense RNA, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COLCA1-201ENST00000355430 HNRNPCP07910 306 aaKnown RBP eCLIP12.65□□□□□ -0.38
COLCA1-201ENST00000355430 SOX11P35716 441 aa12.65□□□□□ -0.38
COLCA1-201ENST00000355430 MTA1Q13330 715 aa12.65□□□□□ -0.38
COLCA1-201ENST00000355430 POLD3Q15054 466 aaPredicted RBP12.65□□□□□ -0.38
COLCA1-201ENST00000355430 UGP2Q16851 508 aa12.65□□□□□ -0.38
COLCA1-201ENST00000355430 SETD3Q86TU7 594 aaPredicted RBP12.65□□□□□ -0.38
COLCA1-201ENST00000355430 CPNE8Q86YQ8 564 aa12.65□□□□□ -0.38
COLCA1-201ENST00000355430 BRSK2Q8IWQ3 736 aa12.65□□□□□ -0.38
COLCA1-201ENST00000355430 IPMKQ8NFU5 416 aa12.65□□□□□ -0.38
COLCA1-201ENST00000355430 GIPC2Q8TF65 315 aa12.65□□□□□ -0.38
COLCA1-201ENST00000355430 SPOCK2Q92563 424 aa12.65□□□□□ -0.38
COLCA1-201ENST00000355430 NMD3Q96D46 503 aaKnown RBP12.65□□□□□ -0.38
COLCA1-201ENST00000355430 ATXN3LQ9H3M9 355 aa12.65□□□□□ -0.38
COLCA1-201ENST00000355430 TLR8Q9NR97 1041 aaKnown RBP12.65□□□□□ -0.38
COLCA1-201ENST00000355430 NFASCO94856 1347 aa12.65□□□□□ -0.38
COLCA1-201ENST00000355430 hCG_1818297A0A087WSY0 165 aa12.65□□□□□ -0.38
COLCA1-201ENST00000355430 ACKR2O00590 384 aa12.65□□□□□ -0.38
COLCA1-201ENST00000355430 ANGPT2O15123 496 aa12.65□□□□□ -0.38
COLCA1-201ENST00000355430 MGRN1O60291 552 aa12.65□□□□□ -0.38
COLCA1-201ENST00000355430 CPA3P15088 417 aa12.65□□□□□ -0.38
COLCA1-201ENST00000355430 CNTFP26441 200 aa12.65□□□□□ -0.38
COLCA1-201ENST00000355430 GLRBP48167 497 aa12.65□□□□□ -0.38
COLCA1-201ENST00000355430 PLPPR4Q7Z2D5 763 aa12.65□□□□□ -0.38
COLCA1-201ENST00000355430 PIGWQ7Z7B1 504 aa12.65□□□□□ -0.38
COLCA1-201ENST00000355430 PHF13Q86YI8 300 aaPredicted RBP12.65□□□□□ -0.38
COLCA1-201ENST00000355430 CCDC60Q8IWA6 550 aaPredicted RBP12.65□□□□□ -0.38
COLCA1-201ENST00000355430 GDPD5Q8WTR4 605 aa12.65□□□□□ -0.38
COLCA1-201ENST00000355430 TRAPPC12Q8WVT3 735 aa12.65□□□□□ -0.38
COLCA1-201ENST00000355430 IL1RL2Q9HB29 575 aa12.65□□□□□ -0.38
COLCA1-201ENST00000355430 TSR3Q9UJK0 312 aaKnown RBP12.65□□□□□ -0.38
COLCA1-201ENST00000355430 MYH6P13533 1939 aa12.65□□□□□ -0.38
COLCA1-201ENST00000355430 BAZ2AQ9UIF9 1905 aaKnown RBP12.65□□□□□ -0.38
COLCA1-201ENST00000355430 NUP188Q5SRE5 1749 aa12.64□□□□□ -0.39
COLCA1-201ENST00000355430 A0A0G2JLL6 359 aaPredicted RBP12.64□□□□□ -0.39
COLCA1-201ENST00000355430 C5orf60A6NFR6 353 aa12.64□□□□□ -0.39
COLCA1-201ENST00000355430 SEPT4O43236 478 aa12.64□□□□□ -0.39
COLCA1-201ENST00000355430 AOC2O75106 756 aa12.64□□□□□ -0.39
COLCA1-201ENST00000355430 ADH1AP07327 375 aa12.64□□□□□ -0.39
COLCA1-201ENST00000355430 THRAP10827 490 aa12.64□□□□□ -0.39
COLCA1-201ENST00000355430 SELPP16109 830 aa12.64□□□□□ -0.39
COLCA1-201ENST00000355430 CRHR2Q13324 411 aa12.64□□□□□ -0.39
COLCA1-201ENST00000355430 RIPK1Q13546 671 aa12.64□□□□□ -0.39
COLCA1-201ENST00000355430 ZNF268Q14587 947 aaPredicted RBP12.64□□□□□ -0.39
COLCA1-201ENST00000355430 NOL9Q5SY16 702 aaKnown RBP12.64□□□□□ -0.39
COLCA1-201ENST00000355430 PRRT2Q7Z6L0 340 aaPredicted RBP12.64□□□□□ -0.39
COLCA1-201ENST00000355430 STRA8Q7Z7C7 330 aa12.64□□□□□ -0.39
COLCA1-201ENST00000355430 COPS5Q92905 334 aa12.64□□□□□ -0.39
COLCA1-201ENST00000355430 PABPC5Q96DU9 382 aaKnown RBP12.64□□□□□ -0.39
COLCA1-201ENST00000355430 TMEM109Q9BVC6 243 aa12.64□□□□□ -0.39
COLCA1-201ENST00000355430 ZNF711Q9Y462 761 aa12.64□□□□□ -0.39
COLCA1-201ENST00000355430 UBA6A0AVT1 1052 aaPredicted RBP12.64□□□□□ -0.39
COLCA1-201ENST00000355430 ITGAVP06756 1048 aa12.64□□□□□ -0.39
COLCA1-201ENST00000355430 CHRNB2P17787 502 aa12.64□□□□□ -0.39
COLCA1-201ENST00000355430 PCSK7Q16549 785 aa12.64□□□□□ -0.39
COLCA1-201ENST00000355430 SLC51AQ86UW1 340 aa12.64□□□□□ -0.39
COLCA1-201ENST00000355430 TDRD5Q8NAT2 981 aaKnown RBP12.64□□□□□ -0.39
COLCA1-201ENST00000355430 ZNF184Q99676 751 aaPredicted RBP12.64□□□□□ -0.39
COLCA1-201ENST00000355430 FBXO44Q9H4M3 255 aa12.64□□□□□ -0.39
COLCA1-201ENST00000355430 THAP1Q9NVV9 213 aa12.64□□□□□ -0.39
COLCA1-201ENST00000355430 SOX13Q9UN79 622 aa12.64□□□□□ -0.39
COLCA1-201ENST00000355430 IGKV6D-41A0A0C4DH26 115 aa12.64□□□□□ -0.39
COLCA1-201ENST00000355430 EIF4BP23588 611 aaKnown RBP12.64□□□□□ -0.39
COLCA1-201ENST00000355430 SKIV2L2P42285 1042 aaKnown RBP12.64□□□□□ -0.39
COLCA1-201ENST00000355430 INPP5AQ14642 412 aa12.64□□□□□ -0.39
COLCA1-201ENST00000355430 RBBP7Q16576 425 aa12.64□□□□□ -0.39
COLCA1-201ENST00000355430 BNC2Q6ZN30 1099 aaPredicted RBP12.64□□□□□ -0.39
COLCA1-201ENST00000355430 COLGALT1Q8NBJ5 622 aa12.64□□□□□ -0.39
COLCA1-201ENST00000355430 RFWD2Q8NHY2 731 aa12.64□□□□□ -0.39
COLCA1-201ENST00000355430 USP13Q92995 863 aaPredicted RBP12.64□□□□□ -0.39
COLCA1-201ENST00000355430 ASB7Q9H672 318 aa12.64□□□□□ -0.39
COLCA1-201ENST00000355430 CYP3A43Q9HB55 503 aa12.64□□□□□ -0.39
COLCA1-201ENST00000355430 LRRC4CQ9HCJ2 640 aa12.64□□□□□ -0.39
COLCA1-201ENST00000355430 IARS2Q9NSE4 1012 aaKnown RBP12.64□□□□□ -0.39
COLCA1-201ENST00000355430 PLA2G4CQ9UP65 541 aa12.64□□□□□ -0.39
COLCA1-201ENST00000355430 SNED1Q8TER0 1413 aa12.64□□□□□ -0.39
COLCA1-201ENST00000355430 M0QYT0 321 aa12.64□□□□□ -0.39
COLCA1-201ENST00000355430 PAX3P23760 479 aa12.64□□□□□ -0.39
COLCA1-201ENST00000355430 RBL1P28749 1068 aa12.64□□□□□ -0.39
COLCA1-201ENST00000355430 SYTL3Q4VX76 610 aa12.64□□□□□ -0.39
COLCA1-201ENST00000355430 ARMC6Q6NXE6 501 aa12.64□□□□□ -0.39
COLCA1-201ENST00000355430 CYGBQ8WWM9 190 aa12.64□□□□□ -0.39
COLCA1-201ENST00000355430 HIC2Q96JB3 615 aa12.64□□□□□ -0.39
COLCA1-201ENST00000355430 SARS2Q9NP81 518 aaKnown RBP12.64□□□□□ -0.39
COLCA1-201ENST00000355430 KCNK4Q9NYG8 393 aa12.64□□□□□ -0.39
COLCA1-201ENST00000355430 SLC17A7Q9P2U7 560 aa12.64□□□□□ -0.39
COLCA1-201ENST00000355430 E2F6O75461 281 aa12.63□□□□□ -0.39
COLCA1-201ENST00000355430 SUPT3HO75486 399 aa12.63□□□□□ -0.39
COLCA1-201ENST00000355430 ETFBP38117 255 aa12.63□□□□□ -0.39
COLCA1-201ENST00000355430 PRKCZQ05513 592 aa12.63□□□□□ -0.39
COLCA1-201ENST00000355430 C16orf46Q6P387 395 aa12.63□□□□□ -0.39
COLCA1-201ENST00000355430 FAM131BQ86XD5 332 aa12.63□□□□□ -0.39
COLCA1-201ENST00000355430 C12orf56Q8IXR9 622 aa12.63□□□□□ -0.39
COLCA1-201ENST00000355430 NUP93Q8N1F7 819 aa12.63□□□□□ -0.39
COLCA1-201ENST00000355430 FBXO22Q8NEZ5 403 aa12.63□□□□□ -0.39
COLCA1-201ENST00000355430 DDI1Q8WTU0 396 aa12.63□□□□□ -0.39
COLCA1-201ENST00000355430 MFSD14AQ96MC6 490 aa12.63□□□□□ -0.39
COLCA1-201ENST00000355430 PDGFDQ9GZP0 370 aaPredicted RBP12.63□□□□□ -0.39
COLCA1-201ENST00000355430 C11orf49Q9H6J7 331 aa12.63□□□□□ -0.39
COLCA1-201ENST00000355430 NSMCE4AQ9NXX6 385 aa12.63□□□□□ -0.39
COLCA1-201ENST00000355430 TSPAN16Q9UKR8 245 aa12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms