RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 PPP1R3GB7ZBB8 358 aa8.65□□□□□ -1.02
HMGB1-203ENST00000341423 KLK10O43240 276 aa8.65□□□□□ -1.02
HMGB1-203ENST00000341423 LDB2O43679 373 aa8.65□□□□□ -1.02
HMGB1-203ENST00000341423 ADCY8P40145 1251 aa8.65□□□□□ -1.02
HMGB1-203ENST00000341423 MYL5Q02045 173 aa8.65□□□□□ -1.02
HMGB1-203ENST00000341423 DMC1Q14565 340 aa8.65□□□□□ -1.02
HMGB1-203ENST00000341423 ST3GAL2Q16842 350 aa8.65□□□□□ -1.02
HMGB1-203ENST00000341423 KNOP1Q1ED39 458 aaKnown RBP8.65□□□□□ -1.02
HMGB1-203ENST00000341423 PPM1JQ5JR12 505 aa8.65□□□□□ -1.02
HMGB1-203ENST00000341423 PIM3Q86V86 326 aa8.65□□□□□ -1.02
HMGB1-203ENST00000341423 ARHGEF19Q8IW93 802 aa8.65□□□□□ -1.02
HMGB1-203ENST00000341423 DHX40Q8IX18 779 aaKnown RBP8.65□□□□□ -1.02
HMGB1-203ENST00000341423 DHTKD1Q96HY7 919 aaPredicted RBP8.65□□□□□ -1.02
HMGB1-203ENST00000341423 HSPA12BQ96MM6 686 aa8.65□□□□□ -1.02
HMGB1-203ENST00000341423 NDC1Q9BTX1 674 aa8.65□□□□□ -1.02
HMGB1-203ENST00000341423 HES2Q9Y543 173 aa8.65□□□□□ -1.02
HMGB1-203ENST00000341423 MYO1GB0I1T2 1018 aa8.65□□□□□ -1.02
HMGB1-203ENST00000341423 CHURC1-FNTBB4DL54 471 aa8.65□□□□□ -1.02
HMGB1-203ENST00000341423 MSH4O15457 936 aa8.65□□□□□ -1.02
HMGB1-203ENST00000341423 GPR37L1O60883 481 aa8.65□□□□□ -1.02
HMGB1-203ENST00000341423 ANP32DO95626 131 aa8.65□□□□□ -1.02
HMGB1-203ENST00000341423 ATP5DP30049 168 aa8.65□□□□□ -1.02
HMGB1-203ENST00000341423 FNTBP49356 437 aa8.65□□□□□ -1.02
HMGB1-203ENST00000341423 UBE2HP62256 183 aa8.65□□□□□ -1.02
HMGB1-203ENST00000341423 RGS1Q08116 209 aa8.65□□□□□ -1.02
HMGB1-203ENST00000341423 ANGPT1Q15389 498 aa8.65□□□□□ -1.02
HMGB1-203ENST00000341423 CNSTQ6PJW8 725 aa8.65□□□□□ -1.02
HMGB1-203ENST00000341423 CCDC134Q9H6E4 229 aa8.65□□□□□ -1.02
HMGB1-203ENST00000341423 TAB2Q9NYJ8 693 aa8.65□□□□□ -1.02
HMGB1-203ENST00000341423 SPATA31C2B4DYI2 1134 aa8.65□□□□□ -1.03
HMGB1-203ENST00000341423 KIF2AO00139 706 aaPredicted RBP8.65□□□□□ -1.03
HMGB1-203ENST00000341423 MUSKO15146 869 aa8.65□□□□□ -1.03
HMGB1-203ENST00000341423 ARHGAP6O43182 974 aa8.65□□□□□ -1.03
HMGB1-203ENST00000341423 GUCY1B2O75343 617 aa8.65□□□□□ -1.03
HMGB1-203ENST00000341423 SKAP2O75563 359 aaPredicted RBP8.65□□□□□ -1.03
HMGB1-203ENST00000341423 TM7SF2O76062 418 aa8.65□□□□□ -1.03
HMGB1-203ENST00000341423 CYP21A2P08686 494 aa8.65□□□□□ -1.03
HMGB1-203ENST00000341423 CDC27P30260 824 aa8.65□□□□□ -1.03
HMGB1-203ENST00000341423 PTPN9P43378 593 aa8.65□□□□□ -1.03
HMGB1-203ENST00000341423 PDIA5Q14554 519 aa8.65□□□□□ -1.03
HMGB1-203ENST00000341423 ANKRD20A2Q5SQ80 823 aa8.65□□□□□ -1.03
HMGB1-203ENST00000341423 ANKRD20A3Q5VUR7 823 aa8.65□□□□□ -1.03
HMGB1-203ENST00000341423 NXNQ6DKJ4 435 aa8.65□□□□□ -1.03
HMGB1-203ENST00000341423 OR6C4Q8NGE1 309 aa8.65□□□□□ -1.03
HMGB1-203ENST00000341423 RAD54LQ92698 747 aa8.65□□□□□ -1.03
HMGB1-203ENST00000341423 IMP3Q9NV31 184 aaKnown RBP8.65□□□□□ -1.03
HMGB1-203ENST00000341423 AHSPQ9NZD4 102 aa8.65□□□□□ -1.03
HMGB1-203ENST00000341423 RSPH14Q9UHP6 348 aa8.65□□□□□ -1.03
HMGB1-203ENST00000341423 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP8.64□□□□□ -1.03
HMGB1-203ENST00000341423 NADKO95544 446 aaPredicted RBP8.64□□□□□ -1.03
HMGB1-203ENST00000341423 ADH1BP00325 375 aa8.64□□□□□ -1.03
HMGB1-203ENST00000341423 POLBP06746 335 aa8.64□□□□□ -1.03
HMGB1-203ENST00000341423 AVPR2P30518 371 aa8.64□□□□□ -1.03
HMGB1-203ENST00000341423 GPC1P35052 558 aa8.64□□□□□ -1.03
HMGB1-203ENST00000341423 CDH6P55285 790 aa8.64□□□□□ -1.03
HMGB1-203ENST00000341423 ALS2CLQ60I27 953 aa8.64□□□□□ -1.03
HMGB1-203ENST00000341423 TXNDC5Q8NBS9 432 aaKnown RBP8.64□□□□□ -1.03
HMGB1-203ENST00000341423 MGARPQ8TDB4 240 aa8.64□□□□□ -1.03
HMGB1-203ENST00000341423 NR1H4Q96RI1 486 aaPredicted RBP8.64□□□□□ -1.03
HMGB1-203ENST00000341423 RTKNQ9BST9 563 aa8.64□□□□□ -1.03
HMGB1-203ENST00000341423 C5orf58C9J3I9 102 aa8.64□□□□□ -1.03
HMGB1-203ENST00000341423 F8VP50 259 aa8.64□□□□□ -1.03
HMGB1-203ENST00000341423 CRTAMO95727 393 aa8.64□□□□□ -1.03
HMGB1-203ENST00000341423 OR56A5P0C7T3 313 aa8.64□□□□□ -1.03
HMGB1-203ENST00000341423 CTSAP10619 480 aa8.64□□□□□ -1.03
HMGB1-203ENST00000341423 CENPAP49450 140 aa8.64□□□□□ -1.03
HMGB1-203ENST00000341423 PDAP1Q13442 181 aaKnown RBP8.64□□□□□ -1.03
HMGB1-203ENST00000341423 RPS6KA1Q15418 735 aa8.64□□□□□ -1.03
HMGB1-203ENST00000341423 BBS9Q3SYG4 887 aa8.64□□□□□ -1.03
HMGB1-203ENST00000341423 C11orf57Q6ZUT1 292 aaPredicted RBP8.64□□□□□ -1.03
HMGB1-203ENST00000341423 TBC1D10CQ8IV04 446 aa8.64□□□□□ -1.03
HMGB1-203ENST00000341423 INTS4Q96HW7 963 aaKnown RBP8.64□□□□□ -1.03
HMGB1-203ENST00000341423 ELAC1Q9H777 363 aaKnown RBP8.64□□□□□ -1.03
HMGB1-203ENST00000341423 PDE11AQ9HCR9 933 aa8.64□□□□□ -1.03
HMGB1-203ENST00000341423 CXXC1Q9P0U4 656 aaPredicted RBP8.64□□□□□ -1.03
HMGB1-203ENST00000341423 SNX14Q9Y5W7 946 aa8.64□□□□□ -1.03
HMGB1-203ENST00000341423 OR10H2O60403 315 aa8.64□□□□□ -1.03
HMGB1-203ENST00000341423 HEXAP06865 529 aa8.64□□□□□ -1.03
HMGB1-203ENST00000341423 CMA1P23946 247 aa8.64□□□□□ -1.03
HMGB1-203ENST00000341423 TAF10Q12962 218 aa8.64□□□□□ -1.03
HMGB1-203ENST00000341423 ZNHIT3Q15649 155 aaPredicted RBP8.64□□□□□ -1.03
HMGB1-203ENST00000341423 HSDL1Q3SXM5 330 aa8.64□□□□□ -1.03
HMGB1-203ENST00000341423 ZC2HC1CQ53FD0 456 aaPredicted RBP8.64□□□□□ -1.03
HMGB1-203ENST00000341423 UBA3Q8TBC4 463 aa8.64□□□□□ -1.03
HMGB1-203ENST00000341423 MLPHQ9BV36 600 aaPredicted RBP8.64□□□□□ -1.03
HMGB1-203ENST00000341423 NKIRAS1Q9NYS0 192 aa8.64□□□□□ -1.03
HMGB1-203ENST00000341423 BCAT2O15382 392 aaPredicted RBP8.64□□□□□ -1.03
HMGB1-203ENST00000341423 CFLARO15519 480 aa8.64□□□□□ -1.03
HMGB1-203ENST00000341423 SRFP11831 508 aa8.64□□□□□ -1.03
HMGB1-203ENST00000341423 EIF4A3P38919 411 aaKnown RBP8.64□□□□□ -1.03
HMGB1-203ENST00000341423 PDK1Q15118 436 aa8.64□□□□□ -1.03
HMGB1-203ENST00000341423 FSCBQ5H9T9 825 aa8.64□□□□□ -1.03
HMGB1-203ENST00000341423 MOXD1Q6UVY6 613 aa8.64□□□□□ -1.03
HMGB1-203ENST00000341423 MON1AQ86VX9 555 aa8.64□□□□□ -1.03
HMGB1-203ENST00000341423 NCSTNQ92542 709 aa8.64□□□□□ -1.03
HMGB1-203ENST00000341423 RUNDC3BQ96NL0 473 aa8.64□□□□□ -1.03
HMGB1-203ENST00000341423 HAUS8Q9BT25 410 aa8.64□□□□□ -1.03
HMGB1-203ENST00000341423 TTYH3Q9C0H2 523 aa8.64□□□□□ -1.03
HMGB1-203ENST00000341423 LY9Q9HBG7 655 aa8.64□□□□□ -1.03
HMGB1-203ENST00000341423 MRTO4Q9UKD2 239 aaKnown RBP8.64□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms