RNA–Protein interactions for RNA: ENST00000322213.8

SMC1A-201, Transcript of structural maintenance of chromosomes 1A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMC1A, Length 9,784 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-201ENST00000322213 HERC3Q15034 1050 aa7.22□□□□□ -1.25
SMC1A-201ENST00000322213 PDK2Q15119 407 aa7.22□□□□□ -1.25
SMC1A-201ENST00000322213 SF3B3Q15393 1217 aaKnown RBP7.22□□□□□ -1.25
SMC1A-201ENST00000322213 AMIGO2Q86SJ2 522 aa7.22□□□□□ -1.25
SMC1A-201ENST00000322213 ALYREFQ86V81 257 aaKnown RBP7.22□□□□□ -1.25
SMC1A-201ENST00000322213 IFT43Q96FT9 208 aa7.22□□□□□ -1.25
SMC1A-201ENST00000322213 B3GALT6Q96L58 329 aa7.22□□□□□ -1.25
SMC1A-201ENST00000322213 EXOSC4Q9NPD3 245 aaKnown RBP7.22□□□□□ -1.25
SMC1A-201ENST00000322213 CPSF3Q9UKF6 684 aaKnown RBP7.22□□□□□ -1.25
SMC1A-201ENST00000322213 ING4Q9UNL4 249 aa7.22□□□□□ -1.25
SMC1A-201ENST00000322213 SIPA1L2Q9P2F8 1722 aaPredicted RBP7.22□□□□□ -1.25
SMC1A-201ENST00000322213 SLC27A3Q5K4L6 730 aa7.22□□□□□ -1.25
SMC1A-201ENST00000322213 SPDYAQ5MJ70 313 aa7.22□□□□□ -1.25
SMC1A-201ENST00000322213 ECHDC2Q86YB7 292 aa7.22□□□□□ -1.25
SMC1A-201ENST00000322213 USP13Q92995 863 aaPredicted RBP7.22□□□□□ -1.25
SMC1A-201ENST00000322213 MUC13Q9H3R2 512 aa7.22□□□□□ -1.25
SMC1A-201ENST00000322213 GINS2Q9Y248 185 aa7.22□□□□□ -1.25
SMC1A-201ENST00000322213 DOCK1Q14185 1865 aa7.22□□□□□ -1.25
SMC1A-201ENST00000322213 TGDSO95455 350 aa7.22□□□□□ -1.25
SMC1A-201ENST00000322213 ATF4P18848 351 aaPredicted RBP7.22□□□□□ -1.25
SMC1A-201ENST00000322213 KYAT1Q16773 422 aa7.22□□□□□ -1.25
SMC1A-201ENST00000322213 TRIM71Q2Q1W2 868 aaKnown RBP7.22□□□□□ -1.25
SMC1A-201ENST00000322213 SLC10A5Q5PT55 438 aa7.22□□□□□ -1.25
SMC1A-201ENST00000322213 ZNF544Q6NX49 715 aa7.22□□□□□ -1.25
SMC1A-201ENST00000322213 KATNAL2Q8IYT4 538 aa7.22□□□□□ -1.25
SMC1A-201ENST00000322213 MIER2Q8N344 545 aa7.22□□□□□ -1.25
SMC1A-201ENST00000322213 SFRP1Q8N474 314 aa7.22□□□□□ -1.25
SMC1A-201ENST00000322213 CRNNQ9UBG3 495 aaPredicted RBP7.22□□□□□ -1.25
SMC1A-201ENST00000322213 LGALS13Q9UHV8 139 aa7.22□□□□□ -1.25
SMC1A-201ENST00000322213 AGO2Q9UKV8 859 aaKnown RBP7.22□□□□□ -1.25
SMC1A-201ENST00000322213 TDRKHQ9Y2W6 561 aaKnown RBP7.22□□□□□ -1.25
SMC1A-201ENST00000322213 RGSL1A5PLK6 1076 aa7.22□□□□□ -1.25
SMC1A-201ENST00000322213 UBDO15205 165 aa7.22□□□□□ -1.25
SMC1A-201ENST00000322213 CD3EAPO15446 510 aaKnown RBP7.22□□□□□ -1.25
SMC1A-201ENST00000322213 PRLP01236 227 aa7.22□□□□□ -1.25
SMC1A-201ENST00000322213 PABPC4LP0CB38 370 aaKnown RBP7.22□□□□□ -1.25
SMC1A-201ENST00000322213 NPR3P17342 541 aa7.22□□□□□ -1.25
SMC1A-201ENST00000322213 RAB25P57735 213 aa7.22□□□□□ -1.25
SMC1A-201ENST00000322213 AGKQ53H12 422 aa7.22□□□□□ -1.25
SMC1A-201ENST00000322213 ANKRD13AQ8IZ07 590 aa7.22□□□□□ -1.25
SMC1A-201ENST00000322213 ADCY4Q8NFM4 1077 aa7.22□□□□□ -1.25
SMC1A-201ENST00000322213 OR6P1Q8NGX9 317 aa7.22□□□□□ -1.25
SMC1A-201ENST00000322213 VCPIP1Q96JH7 1222 aa7.22□□□□□ -1.25
SMC1A-201ENST00000322213 DISP2A7MBM2 1401 aa7.22□□□□□ -1.25
SMC1A-201ENST00000322213 SDK1Q7Z5N4 2213 aa7.22□□□□□ -1.25
SMC1A-201ENST00000322213 C3orf70A6NLC5 250 aaPredicted RBP7.22□□□□□ -1.25
SMC1A-201ENST00000322213 CHADO15335 359 aa7.22□□□□□ -1.25
SMC1A-201ENST00000322213 H6PDO95479 791 aa7.22□□□□□ -1.25
SMC1A-201ENST00000322213 RBP3P10745 1247 aa7.22□□□□□ -1.25
SMC1A-201ENST00000322213 COX4I1P13073 169 aa7.22□□□□□ -1.25
SMC1A-201ENST00000322213 MIIPQ5JXC2 388 aa7.22□□□□□ -1.25
SMC1A-201ENST00000322213 ADHFE1Q8IWW8 467 aa7.22□□□□□ -1.25
SMC1A-201ENST00000322213 ENDOVQ8N8Q3 282 aaKnown RBP7.22□□□□□ -1.25
SMC1A-201ENST00000322213 MRPL4Q9BYD3 311 aaKnown RBP7.22□□□□□ -1.25
SMC1A-201ENST00000322213 HDHD2Q9H0R4 259 aa7.22□□□□□ -1.25
SMC1A-201ENST00000322213 POLR3FQ9H1D9 316 aaPredicted RBP7.22□□□□□ -1.25
SMC1A-201ENST00000322213 EBF3Q9H4W6 596 aa7.22□□□□□ -1.25
SMC1A-201ENST00000322213 RBMX2Q9Y388 322 aaKnown RBP7.22□□□□□ -1.25
SMC1A-201ENST00000322213 ROBO3Q96MS0 1386 aa7.22□□□□□ -1.25
SMC1A-201ENST00000322213 INO80B-WBP1J3KQ70 363 aa7.22□□□□□ -1.25
SMC1A-201ENST00000322213 DFFAO00273 331 aa7.22□□□□□ -1.25
SMC1A-201ENST00000322213 ALAS1P13196 640 aa7.22□□□□□ -1.25
SMC1A-201ENST00000322213 PRKG1Q13976 671 aa7.22□□□□□ -1.25
SMC1A-201ENST00000322213 KHDC1Q4VXA5 237 aaKnown RBP7.22□□□□□ -1.25
SMC1A-201ENST00000322213 LAYNQ6UX15 382 aa7.22□□□□□ -1.25
SMC1A-201ENST00000322213 STRA8Q7Z7C7 330 aa7.22□□□□□ -1.25
SMC1A-201ENST00000322213 WDR36Q8NI36 951 aaKnown RBP7.22□□□□□ -1.25
SMC1A-201ENST00000322213 MKL1Q969V6 931 aa7.22□□□□□ -1.25
SMC1A-201ENST00000322213 INO80BQ9C086 356 aaPredicted RBP7.22□□□□□ -1.25
SMC1A-201ENST00000322213 AGPAT3Q9NRZ7 376 aa7.22□□□□□ -1.25
SMC1A-201ENST00000322213 VPS9D1Q9Y2B5 631 aa7.22□□□□□ -1.25
SMC1A-201ENST00000322213 PTPRUQ92729 1446 aa7.22□□□□□ -1.25
SMC1A-201ENST00000322213 LOC100506127A0A0U1RQW1 187 aa7.22□□□□□ -1.25
SMC1A-201ENST00000322213 E2F8A0AVK6 867 aa7.22□□□□□ -1.25
SMC1A-201ENST00000322213 PARNO95453 639 aaKnown RBP7.22□□□□□ -1.25
SMC1A-201ENST00000322213 GSSP48637 474 aa7.22□□□□□ -1.25
SMC1A-201ENST00000322213 IL5RAQ01344 420 aa7.22□□□□□ -1.25
SMC1A-201ENST00000322213 TNFAIP2Q03169 654 aa7.22□□□□□ -1.25
SMC1A-201ENST00000322213 BTN2A1Q7KYR7 527 aa7.22□□□□□ -1.25
SMC1A-201ENST00000322213 SLCO6A1Q86UG4 719 aa7.22□□□□□ -1.25
SMC1A-201ENST00000322213 FOXP4Q8IVH2 680 aaPredicted RBP7.22□□□□□ -1.25
SMC1A-201ENST00000322213 AADATQ8N5Z0 425 aa7.22□□□□□ -1.25
SMC1A-201ENST00000322213 KLHL32Q96NJ5 620 aa7.22□□□□□ -1.25
SMC1A-201ENST00000322213 NUAK2Q9H093 628 aa7.22□□□□□ -1.25
SMC1A-201ENST00000322213 PCDHGA3Q9Y5H0 932 aa7.22□□□□□ -1.25
SMC1A-201ENST00000322213 RPA1P27694 616 aa7.21□□□□□ -1.25
SMC1A-201ENST00000322213 CCNFP41002 786 aa7.21□□□□□ -1.25
SMC1A-201ENST00000322213 MTM1Q13496 603 aa7.21□□□□□ -1.25
SMC1A-201ENST00000322213 MAPRE1Q15691 268 aaKnown RBP7.21□□□□□ -1.25
SMC1A-201ENST00000322213 CYP4A22Q5TCH4 519 aa7.21□□□□□ -1.25
SMC1A-201ENST00000322213 CACHD1Q5VU97 1274 aa7.21□□□□□ -1.25
SMC1A-201ENST00000322213 CCSAPQ6IQ19 270 aaPredicted RBP7.21□□□□□ -1.25
SMC1A-201ENST00000322213 BNIPLQ7Z465 357 aa7.21□□□□□ -1.25
SMC1A-201ENST00000322213 APPL2Q8NEU8 664 aa7.21□□□□□ -1.25
SMC1A-201ENST00000322213 SPATA20Q8TB22 786 aa7.21□□□□□ -1.25
SMC1A-201ENST00000322213 ASAP1Q9ULH1 1129 aa7.21□□□□□ -1.25
SMC1A-201ENST00000322213 AKT3Q9Y243 479 aa7.21□□□□□ -1.25
SMC1A-201ENST00000322213 SHANK1Q9Y566 2161 aa7.21□□□□□ -1.25
SMC1A-201ENST00000322213 UGT1A9O60656 530 aa7.21□□□□□ -1.25
SMC1A-201ENST00000322213 UGT1A6P19224 532 aa7.21□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms