RNA–Protein interactions for RNA: ENST00000304636.7

COL3A1-201, Transcript of collagen type III alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL3A1, Length 5,543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-201ENST00000304636 GPR162Q16538 588 aa13.14□□□□□ -0.31
COL3A1-201ENST00000304636 ZNF772Q68DY9 489 aaPredicted RBP13.14□□□□□ -0.31
COL3A1-201ENST00000304636 MIER2Q8N344 545 aa13.14□□□□□ -0.31
COL3A1-201ENST00000304636 TBC1D19Q8N5T2 526 aa13.14□□□□□ -0.31
COL3A1-201ENST00000304636 PURBQ96QR8 312 aaKnown RBP13.14□□□□□ -0.31
COL3A1-201ENST00000304636 UGT2B28Q9BY64 529 aa13.14□□□□□ -0.31
COL3A1-201ENST00000304636 ITGA11Q9UKX5 1188 aa13.14□□□□□ -0.31
COL3A1-201ENST00000304636 TPRKBQ9Y3C4 175 aa13.14□□□□□ -0.31
COL3A1-201ENST00000304636 A0A0B4J269 797 aa13.14□□□□□ -0.31
COL3A1-201ENST00000304636 BIRC5O15392 142 aa13.14□□□□□ -0.31
COL3A1-201ENST00000304636 ZNF682O95780 498 aa13.14□□□□□ -0.31
COL3A1-201ENST00000304636 RRM2P31350 389 aa13.14□□□□□ -0.31
COL3A1-201ENST00000304636 SHMT1P34896 483 aa13.14□□□□□ -0.31
COL3A1-201ENST00000304636 SOAT1P35610 550 aa13.14□□□□□ -0.31
COL3A1-201ENST00000304636 BST1Q10588 318 aa13.14□□□□□ -0.31
COL3A1-201ENST00000304636 MSLNQ13421 630 aaPredicted RBP13.14□□□□□ -0.31
COL3A1-201ENST00000304636 FRG1Q14331 258 aaKnown RBP13.14□□□□□ -0.31
COL3A1-201ENST00000304636 HEATR4Q86WZ0 1026 aa13.14□□□□□ -0.31
COL3A1-201ENST00000304636 VGLL2Q8N8G2 317 aa13.14□□□□□ -0.31
COL3A1-201ENST00000304636 ATG16L2Q8NAA4 619 aa13.14□□□□□ -0.31
COL3A1-201ENST00000304636 FAM120BQ96EK7 910 aaKnown RBP13.14□□□□□ -0.31
COL3A1-201ENST00000304636 PRKD2Q9BZL6 878 aa13.14□□□□□ -0.31
COL3A1-201ENST00000304636 PHACTR1Q9C0D0 580 aa13.14□□□□□ -0.31
COL3A1-201ENST00000304636 ACSS3Q9H6R3 686 aa13.14□□□□□ -0.31
COL3A1-201ENST00000304636 PLGRKTQ9HBL7 147 aa13.14□□□□□ -0.31
COL3A1-201ENST00000304636 SLCO1B3Q9NPD5 702 aa13.14□□□□□ -0.31
COL3A1-201ENST00000304636 CLIC5Q9NZA1 410 aa13.14□□□□□ -0.31
COL3A1-201ENST00000304636 CYBBP04839 570 aa13.14□□□□□ -0.31
COL3A1-201ENST00000304636 CYP2C9P11712 490 aa13.14□□□□□ -0.31
COL3A1-201ENST00000304636 TKTP29401 623 aaKnown RBP13.14□□□□□ -0.31
COL3A1-201ENST00000304636 DLG4P78352 724 aa13.14□□□□□ -0.31
COL3A1-201ENST00000304636 TMEM26Q6ZUK4 368 aa13.14□□□□□ -0.31
COL3A1-201ENST00000304636 C3orf67Q6ZVT6 689 aa13.14□□□□□ -0.31
COL3A1-201ENST00000304636 TXNRD3Q86VQ6 643 aa13.14□□□□□ -0.31
COL3A1-201ENST00000304636 ULK2Q8IYT8 1036 aa13.14□□□□□ -0.31
COL3A1-201ENST00000304636 TRIM63Q969Q1 353 aa13.14□□□□□ -0.31
COL3A1-201ENST00000304636 LENG1Q96BZ8 264 aaPredicted RBP13.14□□□□□ -0.31
COL3A1-201ENST00000304636 VTA1Q9NP79 307 aa13.14□□□□□ -0.31
COL3A1-201ENST00000304636 CRLS1Q9UJA2 301 aa13.14□□□□□ -0.31
COL3A1-201ENST00000304636 TSPAN16Q9UKR8 245 aa13.14□□□□□ -0.31
COL3A1-201ENST00000304636 AGPSO00116 658 aa13.14□□□□□ -0.31
COL3A1-201ENST00000304636 MAP3K13O43283 966 aa13.14□□□□□ -0.31
COL3A1-201ENST00000304636 FAM20BO75063 409 aa13.14□□□□□ -0.31
COL3A1-201ENST00000304636 MICAL2O94851 1124 aa13.14□□□□□ -0.31
COL3A1-201ENST00000304636 PGM3O95394 542 aa13.14□□□□□ -0.31
COL3A1-201ENST00000304636 RBL1P28749 1068 aa13.14□□□□□ -0.31
COL3A1-201ENST00000304636 TRIP4Q15650 581 aaPredicted RBP13.14□□□□□ -0.31
COL3A1-201ENST00000304636 NRF1Q16656 503 aa13.14□□□□□ -0.31
COL3A1-201ENST00000304636 FBXW8Q8N3Y1 598 aa13.14□□□□□ -0.31
COL3A1-201ENST00000304636 SYTL5Q8TDW5 730 aaPredicted RBP13.14□□□□□ -0.31
COL3A1-201ENST00000304636 FNIP1Q8TF40 1166 aa13.14□□□□□ -0.31
COL3A1-201ENST00000304636 PHF21BQ96EK2 531 aa13.14□□□□□ -0.31
COL3A1-201ENST00000304636 ASB2Q96Q27 587 aa13.14□□□□□ -0.31
COL3A1-201ENST00000304636 PDCD2LQ9BRP1 358 aa13.14□□□□□ -0.31
COL3A1-201ENST00000304636 PARVBQ9HBI1 364 aa13.14□□□□□ -0.31
COL3A1-201ENST00000304636 CCDC167Q9P0B6 97 aa13.14□□□□□ -0.31
COL3A1-201ENST00000304636 C15orf38-AP3S2A0A0A6YYH1 394 aa13.14□□□□□ -0.31
COL3A1-201ENST00000304636 IL1R1P14778 569 aa13.14□□□□□ -0.31
COL3A1-201ENST00000304636 WASHC5Q12768 1159 aa13.14□□□□□ -0.31
COL3A1-201ENST00000304636 ELMSAN1Q6PJG2 1045 aa13.14□□□□□ -0.31
COL3A1-201ENST00000304636 ARPINQ7Z6K5 226 aa13.14□□□□□ -0.31
COL3A1-201ENST00000304636 SLC9A9Q8IVB4 645 aa13.14□□□□□ -0.31
COL3A1-201ENST00000304636 PRDM16Q9HAZ2 1276 aa13.14□□□□□ -0.31
COL3A1-201ENST00000304636 PPLO60437 1756 aa13.14□□□□□ -0.31
COL3A1-201ENST00000304636 TADA2AO75478 443 aa13.13□□□□□ -0.31
COL3A1-201ENST00000304636 PIGNO95427 931 aa13.13□□□□□ -0.31
COL3A1-201ENST00000304636 MT-CO1P00395 513 aa13.13□□□□□ -0.31
COL3A1-201ENST00000304636 BLVRAP53004 296 aa13.13□□□□□ -0.31
COL3A1-201ENST00000304636 ARMC4Q5T2S8 1044 aa13.13□□□□□ -0.31
COL3A1-201ENST00000304636 RSBN1Q5VWQ0 802 aaPredicted RBP13.13□□□□□ -0.31
COL3A1-201ENST00000304636 C16orf46Q6P387 395 aa13.13□□□□□ -0.31
COL3A1-201ENST00000304636 MICALL2Q8IY33 904 aa13.13□□□□□ -0.31
COL3A1-201ENST00000304636 FAM13CQ8NE31 585 aa13.13□□□□□ -0.31
COL3A1-201ENST00000304636 HAS1Q92839 578 aa13.13□□□□□ -0.31
COL3A1-201ENST00000304636 KAT5Q92993 513 aa13.13□□□□□ -0.31
COL3A1-201ENST00000304636 TADA1Q96BN2 335 aa13.13□□□□□ -0.31
COL3A1-201ENST00000304636 PCDHA11Q9Y5I1 949 aa13.13□□□□□ -0.31
COL3A1-201ENST00000304636 ARHGEF28Q8N1W1 1705 aaKnown RBP13.13□□□□□ -0.31
COL3A1-201ENST00000304636 ALOX15BO15296 676 aa13.13□□□□□ -0.31
COL3A1-201ENST00000304636 FAM45BPQ6NSW5 357 aa13.13□□□□□ -0.31
COL3A1-201ENST00000304636 ACMSDQ8TDX5 336 aa13.13□□□□□ -0.31
COL3A1-201ENST00000304636 RNF145Q96MT1 663 aa13.13□□□□□ -0.31
COL3A1-201ENST00000304636 APOL4Q9BPW4 351 aa13.13□□□□□ -0.31
COL3A1-201ENST00000304636 CEP44Q9C0F1 390 aa13.13□□□□□ -0.31
COL3A1-201ENST00000304636 POLLQ9UGP5 575 aa13.13□□□□□ -0.31
COL3A1-201ENST00000304636 LSM7Q9UK45 103 aaKnown RBP13.13□□□□□ -0.31
COL3A1-201ENST00000304636 ASTN2O75129 1339 aaPredicted RBP13.13□□□□□ -0.31
COL3A1-201ENST00000304636 SPATA31A1Q5TZJ5 1347 aa13.13□□□□□ -0.31
COL3A1-201ENST00000304636 PNMA8CA0A1B0GUJ8 204 aa13.13□□□□□ -0.31
COL3A1-201ENST00000304636 DYNC1LI2O43237 492 aaPredicted RBP13.13□□□□□ -0.31
COL3A1-201ENST00000304636 GJB6O95452 261 aa13.13□□□□□ -0.31
COL3A1-201ENST00000304636 CRTAMO95727 393 aa13.13□□□□□ -0.31
COL3A1-201ENST00000304636 ODC1P11926 461 aa13.13□□□□□ -0.31
COL3A1-201ENST00000304636 CHRNA5P30532 468 aa13.13□□□□□ -0.31
COL3A1-201ENST00000304636 SOX10P56693 466 aa13.13□□□□□ -0.31
COL3A1-201ENST00000304636 ARHGEF7Q14155 803 aa13.13□□□□□ -0.31
COL3A1-201ENST00000304636 RGS21Q2M5E4 152 aa13.13□□□□□ -0.31
COL3A1-201ENST00000304636 RBM44Q6ZP01 1051 aaKnown RBP13.13□□□□□ -0.31
COL3A1-201ENST00000304636 ADGRF2Q8IZF7 708 aa13.13□□□□□ -0.31
COL3A1-201ENST00000304636 MYO1HQ8N1T3 1032 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms