RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 TMEM9Q9P0T7 183 aa6.57□□□□□ -1.36
VPS35-201ENST00000299138 ATPIF1Q9UII2 106 aa6.57□□□□□ -1.36
VPS35-201ENST00000299138 DAGLAQ9Y4D2 1042 aa6.57□□□□□ -1.36
VPS35-201ENST00000299138 EXTL3O43909 919 aa6.57□□□□□ -1.36
VPS35-201ENST00000299138 CCNT2O60583 730 aaKnown RBP6.57□□□□□ -1.36
VPS35-201ENST00000299138 PPM1BO75688 479 aa6.57□□□□□ -1.36
VPS35-201ENST00000299138 THEGLP0DJG4 465 aa6.57□□□□□ -1.36
VPS35-201ENST00000299138 MTTPP55157 894 aa6.57□□□□□ -1.36
VPS35-201ENST00000299138 GHRHRQ02643 423 aa6.57□□□□□ -1.36
VPS35-201ENST00000299138 SULT2A1Q06520 285 aa6.57□□□□□ -1.36
VPS35-201ENST00000299138 SNRNP35Q16560 246 aaKnown RBP6.57□□□□□ -1.36
VPS35-201ENST00000299138 CCDC153Q494R4 210 aa6.57□□□□□ -1.36
VPS35-201ENST00000299138 USP39Q53GS9 565 aaKnown RBP6.57□□□□□ -1.36
VPS35-201ENST00000299138 SPOUT1Q5T280 376 aaKnown RBP6.57□□□□□ -1.36
VPS35-201ENST00000299138 KCTD4Q8WVF5 259 aa6.57□□□□□ -1.36
VPS35-201ENST00000299138 LPAR1Q92633 364 aa6.57□□□□□ -1.36
VPS35-201ENST00000299138 FAM162AQ96A26 154 aa6.57□□□□□ -1.36
VPS35-201ENST00000299138 RFT1Q96AA3 541 aa6.57□□□□□ -1.36
VPS35-201ENST00000299138 CCDC127Q96BQ5 260 aa6.57□□□□□ -1.36
VPS35-201ENST00000299138 MFSD14AQ96MC6 490 aa6.57□□□□□ -1.36
VPS35-201ENST00000299138 ACAP3Q96P50 834 aa6.57□□□□□ -1.36
VPS35-201ENST00000299138 CALN1Q9BXU9 219 aa6.57□□□□□ -1.36
VPS35-201ENST00000299138 C2orf40Q9H1Z8 148 aa6.57□□□□□ -1.36
VPS35-201ENST00000299138 VPS28Q9UK41 221 aa6.57□□□□□ -1.36
VPS35-201ENST00000299138 AP3M1Q9Y2T2 418 aa6.57□□□□□ -1.36
VPS35-201ENST00000299138 SH3GLB1Q9Y371 365 aa6.57□□□□□ -1.36
VPS35-201ENST00000299138 LIASO43766 372 aa6.57□□□□□ -1.36
VPS35-201ENST00000299138 TOP3BO95985 862 aaKnown RBP6.57□□□□□ -1.36
VPS35-201ENST00000299138 ALBP02768 609 aa6.57□□□□□ -1.36
VPS35-201ENST00000299138 DLATP10515 647 aaKnown RBP6.57□□□□□ -1.36
VPS35-201ENST00000299138 TGM2P21980 687 aa6.57□□□□□ -1.36
VPS35-201ENST00000299138 SCNN1DP51172 638 aa6.57□□□□□ -1.36
VPS35-201ENST00000299138 STX5Q13190 355 aa6.57□□□□□ -1.36
VPS35-201ENST00000299138 ACCSLQ4AC99 568 aa6.57□□□□□ -1.36
VPS35-201ENST00000299138 SLC27A3Q5K4L6 730 aa6.57□□□□□ -1.36
VPS35-201ENST00000299138 HM13Q8TCT9 377 aa6.57□□□□□ -1.36
VPS35-201ENST00000299138 FAF2Q96CS3 445 aa6.57□□□□□ -1.36
VPS35-201ENST00000299138 RIOK2Q9BVS4 552 aaKnown RBP6.57□□□□□ -1.36
VPS35-201ENST00000299138 FAM32AQ9Y421 112 aaKnown RBP6.57□□□□□ -1.36
VPS35-201ENST00000299138 DTNAQ9Y4J8 743 aa6.57□□□□□ -1.36
VPS35-201ENST00000299138 TYW5A2RUC4 315 aaKnown RBP6.57□□□□□ -1.36
VPS35-201ENST00000299138 CENPXA8MT69 81 aa6.57□□□□□ -1.36
VPS35-201ENST00000299138 RAD51BO15315 384 aa6.57□□□□□ -1.36
VPS35-201ENST00000299138 PSMD10O75832 226 aa6.57□□□□□ -1.36
VPS35-201ENST00000299138 DGKIO75912 1065 aa6.57□□□□□ -1.36
VPS35-201ENST00000299138 RALBP11234 206 aa6.57□□□□□ -1.36
VPS35-201ENST00000299138 VAV1P15498 845 aa6.57□□□□□ -1.36
VPS35-201ENST00000299138 DLG4P78352 724 aa6.57□□□□□ -1.36
VPS35-201ENST00000299138 OASLQ15646 514 aaKnown RBP6.57□□□□□ -1.36
VPS35-201ENST00000299138 TMEM63BQ5T3F8 832 aa6.57□□□□□ -1.36
VPS35-201ENST00000299138 SPOCD1Q6ZMY3 1216 aa6.57□□□□□ -1.36
VPS35-201ENST00000299138 EFL1Q7Z2Z2 1120 aaKnown RBP6.57□□□□□ -1.36
VPS35-201ENST00000299138 IQCF2Q8IXL9 164 aa6.57□□□□□ -1.36
VPS35-201ENST00000299138 BANPQ8N9N5 519 aa6.57□□□□□ -1.36
VPS35-201ENST00000299138 CRYGNQ8WXF5 182 aa6.57□□□□□ -1.36
VPS35-201ENST00000299138 CELF1Q92879 486 aaKnown RBP6.57□□□□□ -1.36
VPS35-201ENST00000299138 KLHL32Q96NJ5 620 aa6.57□□□□□ -1.36
VPS35-201ENST00000299138 NTPCRQ9BSD7 190 aaKnown RBP6.57□□□□□ -1.36
VPS35-201ENST00000299138 IL1RL2Q9HB29 575 aa6.57□□□□□ -1.36
VPS35-201ENST00000299138 CYP3A43Q9HB55 503 aa6.57□□□□□ -1.36
VPS35-201ENST00000299138 SARS2Q9NP81 518 aaKnown RBP6.57□□□□□ -1.36
VPS35-201ENST00000299138 RPRD1BQ9NQG5 326 aaKnown RBP6.57□□□□□ -1.36
VPS35-201ENST00000299138 ING3Q9NXR8 418 aa6.57□□□□□ -1.36
VPS35-201ENST00000299138 HAO1Q9UJM8 370 aa6.57□□□□□ -1.36
VPS35-201ENST00000299138 NWD2Q9ULI1 1742 aa6.57□□□□□ -1.36
VPS35-201ENST00000299138 C9IYK1 514 aa6.57□□□□□ -1.36
VPS35-201ENST00000299138 AIM2O14862 343 aa6.57□□□□□ -1.36
VPS35-201ENST00000299138 CLPTM1O96005 669 aa6.57□□□□□ -1.36
VPS35-201ENST00000299138 GJA9P57773 515 aa6.57□□□□□ -1.36
VPS35-201ENST00000299138 GPS1Q13098 491 aa6.57□□□□□ -1.36
VPS35-201ENST00000299138 TIFABQ6ZNK6 161 aa6.57□□□□□ -1.36
VPS35-201ENST00000299138 ULK4Q96C45 1275 aa6.57□□□□□ -1.36
VPS35-201ENST00000299138 CCDC126Q96EE4 140 aa6.57□□□□□ -1.36
VPS35-201ENST00000299138 ZC3H10Q96K80 434 aaKnown RBP6.57□□□□□ -1.36
VPS35-201ENST00000299138 STRA6Q9BX79 667 aa6.57□□□□□ -1.36
VPS35-201ENST00000299138 KIAA1683Q9H0B3 1180 aa6.57□□□□□ -1.36
VPS35-201ENST00000299138 GPBP1L1Q9HC44 474 aaPredicted RBP6.57□□□□□ -1.36
VPS35-201ENST00000299138 TMEM260Q9NX78 707 aa6.57□□□□□ -1.36
VPS35-201ENST00000299138 AGAP1Q9UPQ3 857 aa6.57□□□□□ -1.36
VPS35-201ENST00000299138 KAT6BQ8WYB5 2073 aa6.56□□□□□ -1.36
VPS35-201ENST00000299138 ADGRA2Q96PE1 1338 aa6.56□□□□□ -1.36
VPS35-201ENST00000299138 ARPC4-TTLL3A0A0A6YYG9 625 aa6.56□□□□□ -1.36
VPS35-201ENST00000299138 TRIM49D1C9J1S8 452 aa6.56□□□□□ -1.36
VPS35-201ENST00000299138 BCL10O95999 233 aa6.56□□□□□ -1.36
VPS35-201ENST00000299138 AOC1P19801 751 aa6.56□□□□□ -1.36
VPS35-201ENST00000299138 TALDO1P37837 337 aa6.56□□□□□ -1.36
VPS35-201ENST00000299138 LIG4P49917 911 aa6.56□□□□□ -1.36
VPS35-201ENST00000299138 SPIRE1Q08AE8 756 aa6.56□□□□□ -1.36
VPS35-201ENST00000299138 PTK7Q13308 1070 aa6.56□□□□□ -1.36
VPS35-201ENST00000299138 PRMT9Q6P2P2 845 aa6.56□□□□□ -1.36
VPS35-201ENST00000299138 TTC27Q6P3X3 843 aa6.56□□□□□ -1.36
VPS35-201ENST00000299138 OTOAQ7RTW8 1153 aa6.56□□□□□ -1.36
VPS35-201ENST00000299138 KCNK18Q7Z418 384 aa6.56□□□□□ -1.36
VPS35-201ENST00000299138 ZDHHC17Q8IUH5 632 aa6.56□□□□□ -1.36
VPS35-201ENST00000299138 OR6Y1Q8NGX8 325 aa6.56□□□□□ -1.36
VPS35-201ENST00000299138 GATA6Q92908 595 aa6.56□□□□□ -1.36
VPS35-201ENST00000299138 RNFT2Q96EX2 444 aa6.56□□□□□ -1.36
VPS35-201ENST00000299138 KMT5AQ9NQR1 393 aa6.56□□□□□ -1.36
VPS35-201ENST00000299138 DNAJC28Q9NX36 388 aa6.56□□□□□ -1.36
VPS35-201ENST00000299138 SPEF1Q9Y4P9 236 aa6.56□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 56.6 ms