RNA–Protein interactions for RNA: ENST00000263187.3

MSH4-201, Transcript of mutS homolog 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH4, Length 3,266 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4-201ENST00000263187 KRT72Q14CN4 511 aa9.4□□□□□ -0.9
MSH4-201ENST00000263187 BOLA3Q53S33 107 aa9.4□□□□□ -0.9
MSH4-201ENST00000263187 C6orf163Q5TEZ5 329 aa9.4□□□□□ -0.9
MSH4-201ENST00000263187 KDELC2Q7Z4H8 507 aa9.4□□□□□ -0.9
MSH4-201ENST00000263187 CXorf38Q8TB03 319 aa9.4□□□□□ -0.9
MSH4-201ENST00000263187 FAM167AQ96KS9 214 aa9.4□□□□□ -0.9
MSH4-201ENST00000263187 CCDC106Q9BWC9 280 aa9.4□□□□□ -0.9
MSH4-201ENST00000263187 SYBUQ9NX95 663 aa9.4□□□□□ -0.9
MSH4-201ENST00000263187 SIRPGQ9P1W8 387 aa9.4□□□□□ -0.9
MSH4-201ENST00000263187 TXNDC16Q9P2K2 825 aa9.4□□□□□ -0.9
MSH4-201ENST00000263187 EMCNQ9ULC0 261 aa9.4□□□□□ -0.9
MSH4-201ENST00000263187 APOBEC2Q9Y235 224 aaKnown RBP9.4□□□□□ -0.9
MSH4-201ENST00000263187 A0A1B0GVG6 124 aa9.4□□□□□ -0.9
MSH4-201ENST00000263187 OPHN1O60890 802 aa9.4□□□□□ -0.9
MSH4-201ENST00000263187 PRKCHP24723 683 aa9.4□□□□□ -0.9
MSH4-201ENST00000263187 SERPINB5P36952 375 aa9.4□□□□□ -0.9
MSH4-201ENST00000263187 GABRB2P47870 512 aa9.4□□□□□ -0.9
MSH4-201ENST00000263187 GLRBP48167 497 aa9.4□□□□□ -0.9
MSH4-201ENST00000263187 NDUFV1P49821 464 aa9.4□□□□□ -0.9
MSH4-201ENST00000263187 RBP5P82980 135 aa9.4□□□□□ -0.9
MSH4-201ENST00000263187 IRF9Q00978 393 aa9.4□□□□□ -0.9
MSH4-201ENST00000263187 ASPHQ12797 758 aa9.4□□□□□ -0.9
MSH4-201ENST00000263187 GRM1Q13255 1194 aa9.4□□□□□ -0.9
MSH4-201ENST00000263187 KCTD2Q14681 263 aa9.4□□□□□ -0.9
MSH4-201ENST00000263187 DCAF6Q58WW2 860 aa9.4□□□□□ -0.9
MSH4-201ENST00000263187 LCLAT1Q6UWP7 414 aa9.4□□□□□ -0.9
MSH4-201ENST00000263187 MAVSQ7Z434 540 aa9.4□□□□□ -0.9
MSH4-201ENST00000263187 RASSF3Q86WH2 238 aa9.4□□□□□ -0.9
MSH4-201ENST00000263187 HOMEZQ8IX15 550 aa9.4□□□□□ -0.9
MSH4-201ENST00000263187 DEFB107AQ8IZN7 70 aa9.4□□□□□ -0.9
MSH4-201ENST00000263187 PLD6Q8N2A8 252 aaKnown RBP9.4□□□□□ -0.9
MSH4-201ENST00000263187 PNPLA1Q8N8W4 532 aa9.4□□□□□ -0.9
MSH4-201ENST00000263187 AFG1LQ8WV93 481 aa9.4□□□□□ -0.9
MSH4-201ENST00000263187 C12orf42Q96LP6 360 aa9.4□□□□□ -0.9
MSH4-201ENST00000263187 CSPG4P5Q96PW8 444 aa9.4□□□□□ -0.9
MSH4-201ENST00000263187 TUBB6Q9BUF5 446 aa9.4□□□□□ -0.9
MSH4-201ENST00000263187 EIF2AQ9BY44 585 aaKnown RBP9.4□□□□□ -0.9
MSH4-201ENST00000263187 VCXQ9H320 206 aa9.4□□□□□ -0.9
MSH4-201ENST00000263187 MCM3APO60318 1980 aa9.4□□□□□ -0.91
MSH4-201ENST00000263187 PHIPQ8WWQ0 1821 aa9.39□□□□□ -0.91
MSH4-201ENST00000263187 CFLARO15519 480 aa9.39□□□□□ -0.91
MSH4-201ENST00000263187 MFSD11O43934 449 aa9.39□□□□□ -0.91
MSH4-201ENST00000263187 TM7SF2O76062 418 aa9.39□□□□□ -0.91
MSH4-201ENST00000263187 ENDOD1O94919 500 aa9.39□□□□□ -0.91
MSH4-201ENST00000263187 IL18RAPO95256 599 aa9.39□□□□□ -0.91
MSH4-201ENST00000263187 HIC1Q14526 733 aa9.39□□□□□ -0.91
MSH4-201ENST00000263187 STILQ15468 1287 aa9.39□□□□□ -0.91
MSH4-201ENST00000263187 RASIP1Q5U651 963 aa9.39□□□□□ -0.91
MSH4-201ENST00000263187 OR52E8Q6IFG1 317 aa9.39□□□□□ -0.91
MSH4-201ENST00000263187 SLC30A9Q6PML9 568 aa9.39□□□□□ -0.91
MSH4-201ENST00000263187 WDR75Q8IWA0 830 aaKnown RBP9.39□□□□□ -0.91
MSH4-201ENST00000263187 ARHGAP24Q8N264 748 aa9.39□□□□□ -0.91
MSH4-201ENST00000263187 DDX51Q8N8A6 666 aaKnown RBP eCLIP9.39□□□□□ -0.91
MSH4-201ENST00000263187 ACVR1CQ8NER5 493 aa9.39□□□□□ -0.91
MSH4-201ENST00000263187 OR52K1Q8NGK4 314 aa9.39□□□□□ -0.91
MSH4-201ENST00000263187 FRMD8P1Q9BZ68 369 aaPredicted RBP9.39□□□□□ -0.91
MSH4-201ENST00000263187 PLA2G4CQ9UP65 541 aa9.39□□□□□ -0.91
MSH4-201ENST00000263187 FIS1Q9Y3D6 152 aa9.39□□□□□ -0.91
MSH4-201ENST00000263187 SNX10Q9Y5X0 201 aa9.39□□□□□ -0.91
MSH4-201ENST00000263187 RPS6KL1Q9Y6S9 549 aa9.39□□□□□ -0.91
MSH4-201ENST00000263187 A0A088AWK7 358 aa9.39□□□□□ -0.91
MSH4-201ENST00000263187 RNF103O00237 685 aa9.39□□□□□ -0.91
MSH4-201ENST00000263187 AIM2O14862 343 aa9.39□□□□□ -0.91
MSH4-201ENST00000263187 SIN3BO75182 1162 aa9.39□□□□□ -0.91
MSH4-201ENST00000263187 C22orf31O95567 290 aa9.39□□□□□ -0.91
MSH4-201ENST00000263187 AMHP03971 560 aa9.39□□□□□ -0.91
MSH4-201ENST00000263187 CYP2C8P10632 490 aa9.39□□□□□ -0.91
MSH4-201ENST00000263187 AVPR1AP37288 418 aa9.39□□□□□ -0.91
MSH4-201ENST00000263187 TEDDM1Q5T9Z0 273 aa9.39□□□□□ -0.91
MSH4-201ENST00000263187 PID1Q7Z2X4 250 aa9.39□□□□□ -0.91
MSH4-201ENST00000263187 RIOX2Q8IUF8 465 aa9.39□□□□□ -0.91
MSH4-201ENST00000263187 DNAAF3Q8N9W5 541 aa9.39□□□□□ -0.91
MSH4-201ENST00000263187 PIWIL2Q8TC59 973 aaKnown RBP9.39□□□□□ -0.91
MSH4-201ENST00000263187 SLC2A14Q8TDB8 520 aa9.39□□□□□ -0.91
MSH4-201ENST00000263187 HTR3CQ8WXA8 447 aa9.39□□□□□ -0.91
MSH4-201ENST00000263187 C7orf26Q96N11 449 aa9.39□□□□□ -0.91
MSH4-201ENST00000263187 GBP5Q96PP8 586 aa9.39□□□□□ -0.91
MSH4-201ENST00000263187 SMARCAD1Q9H4L7 1026 aa9.39□□□□□ -0.91
MSH4-201ENST00000263187 WDR55Q9H6Y2 383 aaPredicted RBP9.39□□□□□ -0.91
MSH4-201ENST00000263187 CDHR5Q9HBB8 845 aa9.39□□□□□ -0.91
MSH4-201ENST00000263187 GJD2Q9UKL4 321 aa9.39□□□□□ -0.91
MSH4-201ENST00000263187 PCDHA11Q9Y5I1 949 aa9.39□□□□□ -0.91
MSH4-201ENST00000263187 IGKV6-21A0A0C4DH24 114 aa9.39□□□□□ -0.91
MSH4-201ENST00000263187 PPP1R12AO14974 1030 aaPredicted RBP9.39□□□□□ -0.91
MSH4-201ENST00000263187 HNRNPCL1O60812 293 aaKnown RBP9.39□□□□□ -0.91
MSH4-201ENST00000263187 RNASEH1O60930 286 aaKnown RBP9.39□□□□□ -0.91
MSH4-201ENST00000263187 SPAG6O75602 509 aa9.39□□□□□ -0.91
MSH4-201ENST00000263187 GSRP00390 522 aa9.39□□□□□ -0.91
MSH4-201ENST00000263187 FGF3P11487 239 aaPredicted RBP9.39□□□□□ -0.91
MSH4-201ENST00000263187 TCN1P20061 433 aaPredicted RBP9.39□□□□□ -0.91
MSH4-201ENST00000263187 PEX2P28328 305 aa9.39□□□□□ -0.91
MSH4-201ENST00000263187 CRHR1P34998 444 aa9.39□□□□□ -0.91
MSH4-201ENST00000263187 PAPOLAP51003 745 aaKnown RBP9.39□□□□□ -0.91
MSH4-201ENST00000263187 AP2B1P63010 937 aa9.39□□□□□ -0.91
MSH4-201ENST00000263187 PDK2Q15119 407 aa9.39□□□□□ -0.91
MSH4-201ENST00000263187 SPDYAQ5MJ70 313 aa9.39□□□□□ -0.91
MSH4-201ENST00000263187 SLC9A4Q6AI14 798 aa9.39□□□□□ -0.91
MSH4-201ENST00000263187 IRGCQ6NXR0 463 aa9.39□□□□□ -0.91
MSH4-201ENST00000263187 PACS1Q6VY07 963 aa9.39□□□□□ -0.91
MSH4-201ENST00000263187 RNF111Q6ZNA4 994 aa9.39□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms