RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 KCNJ11Q14654 390 aa14.78□□□□□ -0.04
SDC1-201ENST00000254351 FAM102AQ5T9C2 384 aaPredicted RBP14.78□□□□□ -0.04
SDC1-201ENST00000254351 CLVS1Q8IUQ0 354 aaPredicted RBP14.78□□□□□ -0.04
SDC1-201ENST00000254351 ATP6V1E2Q96A05 226 aa14.78□□□□□ -0.04
SDC1-201ENST00000254351 PIWIL1Q96J94 861 aaKnown RBP14.78□□□□□ -0.04
SDC1-201ENST00000254351 VCPIP1Q96JH7 1222 aa14.78□□□□□ -0.04
SDC1-201ENST00000254351 FBXL18Q96ME1 805 aa14.78□□□□□ -0.04
SDC1-201ENST00000254351 RBM38Q9H0Z9 239 aaKnown RBP14.78□□□□□ -0.04
SDC1-201ENST00000254351 PCDHAC1Q9H158 963 aa14.78□□□□□ -0.04
SDC1-201ENST00000254351 CAB39LQ9H9S4 337 aa14.78□□□□□ -0.04
SDC1-201ENST00000254351 C20orf96Q9NUD7 363 aaPredicted RBP14.78□□□□□ -0.04
SDC1-201ENST00000254351 NDUFA13Q9P0J0 144 aa14.78□□□□□ -0.04
SDC1-201ENST00000254351 FETUBQ9UGM5 382 aa14.78□□□□□ -0.04
SDC1-201ENST00000254351 RSL24D1Q9UHA3 163 aaKnown RBP14.78□□□□□ -0.04
SDC1-201ENST00000254351 EMCNQ9ULC0 261 aa14.78□□□□□ -0.04
SDC1-201ENST00000254351 PSMD13Q9UNM6 376 aa14.78□□□□□ -0.04
SDC1-201ENST00000254351 HES2Q9Y543 173 aa14.78□□□□□ -0.04
SDC1-201ENST00000254351 CEPT1Q9Y6K0 416 aa14.78□□□□□ -0.04
SDC1-201ENST00000254351 ALDOAP04075 364 aaKnown RBP14.77□□□□□ -0.04
SDC1-201ENST00000254351 TYK2P29597 1187 aa14.77□□□□□ -0.04
SDC1-201ENST00000254351 ALDH1B1P30837 517 aa14.77□□□□□ -0.04
SDC1-201ENST00000254351 KLF10Q13118 480 aa14.77□□□□□ -0.04
SDC1-201ENST00000254351 DLG2Q15700 870 aa14.77□□□□□ -0.04
SDC1-201ENST00000254351 LAYNQ6UX15 382 aa14.77□□□□□ -0.04
SDC1-201ENST00000254351 ADAMTSL1Q8N6G6 1762 aa14.77□□□□□ -0.04
SDC1-201ENST00000254351 PCDH20Q8N6Y1 951 aaKnown RBP14.77□□□□□ -0.04
SDC1-201ENST00000254351 JADE3Q92613 823 aa14.77□□□□□ -0.04
SDC1-201ENST00000254351 PPWD1Q96BP3 646 aaKnown RBP14.77□□□□□ -0.04
SDC1-201ENST00000254351 PRMT6Q96LA8 375 aaPredicted RBP14.77□□□□□ -0.04
SDC1-201ENST00000254351 MRPS26Q9BYN8 205 aaKnown RBP14.77□□□□□ -0.04
SDC1-201ENST00000254351 SELENONQ9NZV5 590 aa14.77□□□□□ -0.04
SDC1-201ENST00000254351 GOLGA8TH3BQL2 631 aa14.77□□□□□ -0.05
SDC1-201ENST00000254351 FBXO21O94952 628 aa14.77□□□□□ -0.05
SDC1-201ENST00000254351 RALBP11234 206 aa14.77□□□□□ -0.05
SDC1-201ENST00000254351 COL6A2P12110 1019 aa14.77□□□□□ -0.05
SDC1-201ENST00000254351 PSMC3P17980 439 aa14.77□□□□□ -0.05
SDC1-201ENST00000254351 OGFOD2Q6N063 350 aa14.77□□□□□ -0.05
SDC1-201ENST00000254351 XKR5Q6UX68 686 aa14.77□□□□□ -0.05
SDC1-201ENST00000254351 C15orf39Q6ZRI6 1047 aa14.77□□□□□ -0.05
SDC1-201ENST00000254351 MARVELD2Q8N4S9 558 aa14.77□□□□□ -0.05
SDC1-201ENST00000254351 NLRP7Q8WX94 980 aa14.77□□□□□ -0.05
SDC1-201ENST00000254351 NPAS2Q99743 824 aa14.77□□□□□ -0.05
SDC1-201ENST00000254351 NUF2Q9BZD4 464 aa14.77□□□□□ -0.05
SDC1-201ENST00000254351 TRPV6Q9H1D0 765 aa14.77□□□□□ -0.05
SDC1-201ENST00000254351 SNX13Q9Y5W8 968 aa14.77□□□□□ -0.05
SDC1-201ENST00000254351 K7ERI5 159 aa14.77□□□□□ -0.05
SDC1-201ENST00000254351 PMM2O15305 246 aa14.77□□□□□ -0.05
SDC1-201ENST00000254351 EDN1P05305 212 aa14.77□□□□□ -0.05
SDC1-201ENST00000254351 CHRNGP07510 517 aa14.77□□□□□ -0.05
SDC1-201ENST00000254351 ERVK-10P10266 1014 aa14.77□□□□□ -0.05
SDC1-201ENST00000254351 RXRGP48443 463 aa14.77□□□□□ -0.05
SDC1-201ENST00000254351 MTTPP55157 894 aa14.77□□□□□ -0.05
SDC1-201ENST00000254351 SH3BGRP55822 239 aaPredicted RBP14.77□□□□□ -0.05
SDC1-201ENST00000254351 GRAMD4Q6IC98 578 aa14.77□□□□□ -0.05
SDC1-201ENST00000254351 C15orf52Q6ZUT6 534 aaKnown RBP14.77□□□□□ -0.05
SDC1-201ENST00000254351 ADGRG6Q86SQ4 1221 aa14.77□□□□□ -0.05
SDC1-201ENST00000254351 KCNK16Q96T55 309 aa14.77□□□□□ -0.05
SDC1-201ENST00000254351 RMDN3Q96TC7 470 aa14.77□□□□□ -0.05
SDC1-201ENST00000254351 SORT1Q99523 831 aa14.77□□□□□ -0.05
SDC1-201ENST00000254351 CIB1Q99828 191 aa14.77□□□□□ -0.05
SDC1-201ENST00000254351 TMEM79Q9BSE2 394 aa14.77□□□□□ -0.05
SDC1-201ENST00000254351 RMI1Q9H9A7 625 aa14.77□□□□□ -0.05
SDC1-201ENST00000254351 INIPQ9NRY2 104 aa14.77□□□□□ -0.05
SDC1-201ENST00000254351 RBMX2Q9Y388 322 aaKnown RBP14.77□□□□□ -0.05
SDC1-201ENST00000254351 LRRC37AA6NMS7 1700 aa14.76□□□□□ -0.05
SDC1-201ENST00000254351 CLIC3O95833 236 aa14.76□□□□□ -0.05
SDC1-201ENST00000254351 EIF4BP23588 611 aaKnown RBP14.76□□□□□ -0.05
SDC1-201ENST00000254351 CRHR1P34998 444 aa14.76□□□□□ -0.05
SDC1-201ENST00000254351 MLH1P40692 756 aa14.76□□□□□ -0.05
SDC1-201ENST00000254351 RGS7P49802 495 aa14.76□□□□□ -0.05
SDC1-201ENST00000254351 RPS6P62753 249 aaKnown RBP14.76□□□□□ -0.05
SDC1-201ENST00000254351 CD300CQ08708 224 aa14.76□□□□□ -0.05
SDC1-201ENST00000254351 TRPC3Q13507 836 aa14.76□□□□□ -0.05
SDC1-201ENST00000254351 PCLAFQ15004 111 aa14.76□□□□□ -0.05
SDC1-201ENST00000254351 TBCCQ15814 346 aa14.76□□□□□ -0.05
SDC1-201ENST00000254351 FAM91A1Q658Y4 838 aa14.76□□□□□ -0.05
SDC1-201ENST00000254351 DSELQ8IZU8 1212 aa14.76□□□□□ -0.05
SDC1-201ENST00000254351 ZBTB8BQ8NAP8 495 aaPredicted RBP14.76□□□□□ -0.05
SDC1-201ENST00000254351 KLHL32Q96NJ5 620 aa14.76□□□□□ -0.05
SDC1-201ENST00000254351 NRDE2Q9H7Z3 1164 aa14.76□□□□□ -0.05
SDC1-201ENST00000254351 CYP26B1Q9NR63 512 aa14.76□□□□□ -0.05
SDC1-201ENST00000254351 SEPT10Q9P0V9 454 aa14.76□□□□□ -0.05
SDC1-201ENST00000254351 NFASCO94856 1347 aa14.76□□□□□ -0.05
SDC1-201ENST00000254351 PLOD2O00469 737 aa14.76□□□□□ -0.05
SDC1-201ENST00000254351 TPST1O60507 370 aa14.76□□□□□ -0.05
SDC1-201ENST00000254351 GSRP00390 522 aa14.76□□□□□ -0.05
SDC1-201ENST00000254351 C1QAP02745 245 aa14.76□□□□□ -0.05
SDC1-201ENST00000254351 ERBB2P04626 1255 aa14.76□□□□□ -0.05
SDC1-201ENST00000254351 GLRBP48167 497 aa14.76□□□□□ -0.05
SDC1-201ENST00000254351 NDST2P52849 883 aa14.76□□□□□ -0.05
SDC1-201ENST00000254351 BCAR1P56945 870 aa14.76□□□□□ -0.05
SDC1-201ENST00000254351 LRRC38Q5VT99 294 aa14.76□□□□□ -0.05
SDC1-201ENST00000254351 IL23RQ5VWK5 629 aa14.76□□□□□ -0.05
SDC1-201ENST00000254351 NAPRTQ6XQN6 538 aa14.76□□□□□ -0.05
SDC1-201ENST00000254351 THNSL1Q8IYQ7 743 aa14.76□□□□□ -0.05
SDC1-201ENST00000254351 BTBD9Q96Q07 612 aa14.76□□□□□ -0.05
SDC1-201ENST00000254351 EPS15L1Q9UBC2 864 aa14.76□□□□□ -0.05
SDC1-201ENST00000254351 ITGA11Q9UKX5 1188 aa14.76□□□□□ -0.05
SDC1-201ENST00000254351 ARHGEF37A1IGU5 675 aa14.75□□□□□ -0.05
SDC1-201ENST00000254351 SPDYE2BA6NHP3 402 aa14.75□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms