RNA–Protein interactions for RNA: ENST00000238497.9

VPS4B-201, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4B, Length 3,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-201ENST00000238497 NEU2Q9Y3R4 380 aa8.98□□□□□ -0.97
VPS4B-201ENST00000238497 ARHGEF37A1IGU5 675 aa8.98□□□□□ -0.97
VPS4B-201ENST00000238497 SPTLC1O15269 473 aa8.98□□□□□ -0.97
VPS4B-201ENST00000238497 RIPK2O43353 540 aa8.98□□□□□ -0.97
VPS4B-201ENST00000238497 HNRNPA1P09651 372 aaKnown RBP eCLIP8.98□□□□□ -0.97
VPS4B-201ENST00000238497 MIPP30301 263 aa8.98□□□□□ -0.97
VPS4B-201ENST00000238497 NME3Q13232 169 aa8.98□□□□□ -0.97
VPS4B-201ENST00000238497 TDGQ13569 410 aa8.98□□□□□ -0.97
VPS4B-201ENST00000238497 PPP2R5DQ14738 602 aa8.98□□□□□ -0.97
VPS4B-201ENST00000238497 SLC39A12Q504Y0 691 aa8.98□□□□□ -0.97
VPS4B-201ENST00000238497 PLEKHA7Q6IQ23 1121 aa8.98□□□□□ -0.97
VPS4B-201ENST00000238497 PPP1R21Q6ZMI0 780 aa8.98□□□□□ -0.97
VPS4B-201ENST00000238497 C4orf33Q8N1A6 199 aa8.98□□□□□ -0.97
VPS4B-201ENST00000238497 SLC4A11Q8NBS3 891 aa8.98□□□□□ -0.97
VPS4B-201ENST00000238497 CMASQ8NFW8 434 aaPredicted RBP8.98□□□□□ -0.97
VPS4B-201ENST00000238497 CLEC4CQ8WTT0 213 aa8.98□□□□□ -0.97
VPS4B-201ENST00000238497 MAIP1Q8WWC4 291 aa8.98□□□□□ -0.97
VPS4B-201ENST00000238497 FGF13Q92913 245 aa8.98□□□□□ -0.97
VPS4B-201ENST00000238497 ZNF560Q96MR9 790 aa8.98□□□□□ -0.97
VPS4B-201ENST00000238497 SH3GL2Q99962 352 aa8.98□□□□□ -0.97
VPS4B-201ENST00000238497 SNX25Q9H3E2 840 aa8.98□□□□□ -0.97
VPS4B-201ENST00000238497 DHX35Q9H5Z1 703 aaKnown RBP8.98□□□□□ -0.97
VPS4B-201ENST00000238497 AVENQ9NQS1 362 aaPredicted RBP8.98□□□□□ -0.97
VPS4B-201ENST00000238497 PSD3Q9NYI0 1048 aa8.98□□□□□ -0.97
VPS4B-201ENST00000238497 TTLL3Q9Y4R7 772 aa8.98□□□□□ -0.97
VPS4B-201ENST00000238497 EXOC1LA0A1B0GW35 172 aa8.97□□□□□ -0.97
VPS4B-201ENST00000238497 CLDN5O00501 218 aa8.97□□□□□ -0.97
VPS4B-201ENST00000238497 SEC24AO95486 1093 aa8.97□□□□□ -0.97
VPS4B-201ENST00000238497 RHOP08100 348 aa8.97□□□□□ -0.97
VPS4B-201ENST00000238497 RBP3P10745 1247 aa8.97□□□□□ -0.97
VPS4B-201ENST00000238497 CYP3A5P20815 502 aa8.97□□□□□ -0.97
VPS4B-201ENST00000238497 LMO2P25791 158 aa8.97□□□□□ -0.97
VPS4B-201ENST00000238497 TNFRSF8P28908 595 aa8.97□□□□□ -0.97
VPS4B-201ENST00000238497 LRPAP1P30533 357 aa8.97□□□□□ -0.97
VPS4B-201ENST00000238497 AP3M2P53677 418 aa8.97□□□□□ -0.97
VPS4B-201ENST00000238497 SLMAPQ14BN4 828 aa8.97□□□□□ -0.97
VPS4B-201ENST00000238497 ZC3H12AQ5D1E8 599 aaKnown RBP8.97□□□□□ -0.97
VPS4B-201ENST00000238497 PHF13Q86YI8 300 aaPredicted RBP8.97□□□□□ -0.97
VPS4B-201ENST00000238497 RCOR2Q8IZ40 523 aa8.97□□□□□ -0.97
VPS4B-201ENST00000238497 ADAM32Q8TC27 787 aa8.97□□□□□ -0.97
VPS4B-201ENST00000238497 SPATA18Q8TC71 538 aa8.97□□□□□ -0.97
VPS4B-201ENST00000238497 RBM41Q96IZ5 413 aaKnown RBP8.97□□□□□ -0.97
VPS4B-201ENST00000238497 TMEM209Q96SK2 561 aa8.97□□□□□ -0.97
VPS4B-201ENST00000238497 KXD1Q9BQD3 176 aa8.97□□□□□ -0.97
VPS4B-201ENST00000238497 PCYOX1Q9UHG3 505 aa8.97□□□□□ -0.97
VPS4B-201ENST00000238497 C2CD2Q9Y426 696 aa8.97□□□□□ -0.97
VPS4B-201ENST00000238497 INSL5Q9Y5Q6 135 aa8.97□□□□□ -0.97
VPS4B-201ENST00000238497 KPNA7A9QM74 516 aa8.97□□□□□ -0.97
VPS4B-201ENST00000238497 NARSO43776 548 aaKnown RBP8.97□□□□□ -0.97
VPS4B-201ENST00000238497 LAMP2P13473 410 aa8.97□□□□□ -0.97
VPS4B-201ENST00000238497 PTPN2P17706 415 aa8.97□□□□□ -0.97
VPS4B-201ENST00000238497 EIF3EP60228 445 aaKnown RBP8.97□□□□□ -0.97
VPS4B-201ENST00000238497 ZNF252P-AS1Q0IIN9 211 aa8.97□□□□□ -0.97
VPS4B-201ENST00000238497 SV2CQ496J9 727 aa8.97□□□□□ -0.97
VPS4B-201ENST00000238497 TFDP3Q5H9I0 405 aa8.97□□□□□ -0.97
VPS4B-201ENST00000238497 SLC8B1Q6J4K2 584 aa8.97□□□□□ -0.97
VPS4B-201ENST00000238497 PALM2Q8IXS6 379 aa8.97□□□□□ -0.97
VPS4B-201ENST00000238497 GPR65Q8IYL9 337 aa8.97□□□□□ -0.97
VPS4B-201ENST00000238497 ZNF473Q8WTR7 871 aaKnown RBP8.97□□□□□ -0.97
VPS4B-201ENST00000238497 SLITRK1Q96PX8 696 aa8.97□□□□□ -0.97
VPS4B-201ENST00000238497 CCDC77Q9BR77 488 aa8.97□□□□□ -0.97
VPS4B-201ENST00000238497 DNMT3BQ9UBC3 853 aaKnown RBP8.97□□□□□ -0.97
VPS4B-201ENST00000238497 AFF4Q9UHB7 1163 aaKnown RBP8.97□□□□□ -0.97
VPS4B-201ENST00000238497 USP18Q9UMW8 372 aa8.97□□□□□ -0.97
VPS4B-201ENST00000238497 WDR87Q6ZQQ6 2873 aa8.97□□□□□ -0.97
VPS4B-201ENST00000238497 GMNCA6NCL1 334 aa8.97□□□□□ -0.97
VPS4B-201ENST00000238497 PMM2O15305 246 aa8.97□□□□□ -0.97
VPS4B-201ENST00000238497 CREB3O43889 395 aa8.97□□□□□ -0.97
VPS4B-201ENST00000238497 FAM189A1O60320 539 aa8.97□□□□□ -0.97
VPS4B-201ENST00000238497 LRCH4O75427 683 aa8.97□□□□□ -0.97
VPS4B-201ENST00000238497 EFEMP2O95967 443 aa8.97□□□□□ -0.97
VPS4B-201ENST00000238497 BRAFP15056 766 aa8.97□□□□□ -0.97
VPS4B-201ENST00000238497 PECAM1P16284 738 aaPredicted RBP8.97□□□□□ -0.97
VPS4B-201ENST00000238497 FNTAP49354 379 aa8.97□□□□□ -0.97
VPS4B-201ENST00000238497 YWHAGP61981 247 aaKnown RBP eCLIP8.97□□□□□ -0.97
VPS4B-201ENST00000238497 TSPY1Q01534 308 aa8.97□□□□□ -0.97
VPS4B-201ENST00000238497 PIGHQ14442 188 aaPredicted RBP8.97□□□□□ -0.97
VPS4B-201ENST00000238497 SIX1Q15475 284 aaPredicted RBP8.97□□□□□ -0.97
VPS4B-201ENST00000238497 ZBTB6Q15916 424 aa8.97□□□□□ -0.97
VPS4B-201ENST00000238497 PMF1Q6P1K2 205 aa8.97□□□□□ -0.97
VPS4B-201ENST00000238497 CASC4Q6P4E1 433 aa8.97□□□□□ -0.97
VPS4B-201ENST00000238497 SIX5Q8N196 739 aa8.97□□□□□ -0.97
VPS4B-201ENST00000238497 GPR152Q8TDT2 470 aa8.97□□□□□ -0.97
VPS4B-201ENST00000238497 GIPC2Q8TF65 315 aa8.97□□□□□ -0.97
VPS4B-201ENST00000238497 RUBCNQ92622 972 aa8.97□□□□□ -0.97
VPS4B-201ENST00000238497 ASAH2Q9NR71 780 aa8.97□□□□□ -0.97
VPS4B-201ENST00000238497 MAD1L1Q9Y6D9 718 aa8.97□□□□□ -0.97
VPS4B-201ENST00000238497 NUMBLQ9Y6R0 609 aa8.97□□□□□ -0.97
VPS4B-201ENST00000238497 CAPN7Q9Y6W3 813 aa8.97□□□□□ -0.97
VPS4B-201ENST00000238497 RASA4BC9J798 803 aa8.96□□□□□ -0.97
VPS4B-201ENST00000238497 RASA4O43374 803 aa8.96□□□□□ -0.97
VPS4B-201ENST00000238497 ITIH2P19823 946 aa8.96□□□□□ -0.97
VPS4B-201ENST00000238497 SSTR1P30872 391 aa8.96□□□□□ -0.97
VPS4B-201ENST00000238497 MAGEA4P43358 317 aa8.96□□□□□ -0.97
VPS4B-201ENST00000238497 EPHB3P54753 998 aa8.96□□□□□ -0.97
VPS4B-201ENST00000238497 GDF10P55107 478 aa8.96□□□□□ -0.97
VPS4B-201ENST00000238497 QPCTQ16769 361 aa8.96□□□□□ -0.97
VPS4B-201ENST00000238497 SRLQ86TD4 932 aa8.96□□□□□ -0.97
VPS4B-201ENST00000238497 FAM131BQ86XD5 332 aa8.96□□□□□ -0.97
VPS4B-201ENST00000238497 SCN4BQ8IWT1 228 aa8.96□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms