RNA–Protein interactions for RNA: ENST00000639659.1

SYNE2-228, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-228ENST00000639659 PIWIL1Q96J94 861 aaKnown RBP15.72■□□□□ 0.11
SYNE2-228ENST00000639659 HEXIM2Q96MH2 286 aaKnown RBP15.72■□□□□ 0.11
SYNE2-228ENST00000639659 DUSP16Q9BY84 665 aa15.72■□□□□ 0.11
SYNE2-228ENST00000639659 NIF3L1Q9GZT8 377 aa15.72■□□□□ 0.11
SYNE2-228ENST00000639659 DMAC2Q9NW81 257 aa15.72■□□□□ 0.11
SYNE2-228ENST00000639659 TOR4AQ9NXH8 423 aa15.72■□□□□ 0.11
SYNE2-228ENST00000639659 APC2O95996 2303 aa15.72■□□□□ 0.11
SYNE2-228ENST00000639659 TRABD2BA6NFA1 517 aa15.71■□□□□ 0.11
SYNE2-228ENST00000639659 CALUO43852 315 aaPredicted RBP15.71■□□□□ 0.11
SYNE2-228ENST00000639659 KLRC4O43908 158 aa15.71■□□□□ 0.11
SYNE2-228ENST00000639659 ZIC2O95409 532 aaPredicted RBP15.71■□□□□ 0.11
SYNE2-228ENST00000639659 YWHAGP61981 247 aaKnown RBP eCLIP15.71■□□□□ 0.11
SYNE2-228ENST00000639659 ENPP2Q13822 863 aa15.71■□□□□ 0.11
SYNE2-228ENST00000639659 E2F5Q15329 346 aa15.71■□□□□ 0.11
SYNE2-228ENST00000639659 TMEM215Q68D42 235 aa15.71■□□□□ 0.11
SYNE2-228ENST00000639659 SLC9A9Q8IVB4 645 aa15.71■□□□□ 0.11
SYNE2-228ENST00000639659 BAHD1Q8TBE0 780 aaPredicted RBP15.71■□□□□ 0.11
SYNE2-228ENST00000639659 GANCQ8TET4 914 aa15.71■□□□□ 0.11
SYNE2-228ENST00000639659 CRELD1Q96HD1 420 aa15.71■□□□□ 0.11
SYNE2-228ENST00000639659 BACH2Q9BYV9 841 aa15.71■□□□□ 0.11
SYNE2-228ENST00000639659 KCTD10Q9H3F6 313 aa15.71■□□□□ 0.11
SYNE2-228ENST00000639659 CYP3A43Q9HB55 503 aa15.71■□□□□ 0.11
SYNE2-228ENST00000639659 CLIC5Q9NZA1 410 aa15.71■□□□□ 0.11
SYNE2-228ENST00000639659 KIAA1522Q9P206 1035 aaPredicted RBP15.71■□□□□ 0.11
SYNE2-228ENST00000639659 PCDHA7Q9UN72 937 aa15.71■□□□□ 0.11
SYNE2-228ENST00000639659 ANKRD6Q9Y2G4 727 aa15.71■□□□□ 0.11
SYNE2-228ENST00000639659 GOLGA4Q13439 2230 aaKnown RBP15.71■□□□□ 0.1
SYNE2-228ENST00000639659 FAM47DPA6NHR8 397 aa15.7■□□□□ 0.1
SYNE2-228ENST00000639659 SEMA4FO95754 770 aa15.7■□□□□ 0.1
SYNE2-228ENST00000639659 KRT13P13646 458 aa15.7■□□□□ 0.1
SYNE2-228ENST00000639659 PDIA4P13667 645 aaKnown RBP15.7■□□□□ 0.1
SYNE2-228ENST00000639659 CCT8P50990 548 aa15.7■□□□□ 0.1
SYNE2-228ENST00000639659 C1orf220Q5T0J3 134 aa15.7■□□□□ 0.1
SYNE2-228ENST00000639659 DHRS13Q6UX07 377 aa15.7■□□□□ 0.1
SYNE2-228ENST00000639659 CHST9Q7L1S5 443 aa15.7■□□□□ 0.1
SYNE2-228ENST00000639659 ARHGAP18Q8N392 663 aa15.7■□□□□ 0.1
SYNE2-228ENST00000639659 GALNT15Q8N3T1 639 aa15.7■□□□□ 0.1
SYNE2-228ENST00000639659 NDRG1Q92597 394 aaKnown RBP15.7■□□□□ 0.1
SYNE2-228ENST00000639659 BBC3Q96PG8 261 aaPredicted RBP15.7■□□□□ 0.1
SYNE2-228ENST00000639659 TM9SF3Q9HD45 589 aa15.7■□□□□ 0.1
SYNE2-228ENST00000639659 PLA2G4CQ9UP65 541 aa15.7■□□□□ 0.1
SYNE2-228ENST00000639659 ZBTB32Q9Y2Y4 487 aaPredicted RBP15.7■□□□□ 0.1
SYNE2-228ENST00000639659 PCDHGB2Q9Y5G2 931 aa15.7■□□□□ 0.1
SYNE2-228ENST00000639659 LAMA5O15230 3695 aa15.7■□□□□ 0.1
SYNE2-228ENST00000639659 IGSF10Q6WRI0 2623 aa15.69■□□□□ 0.1
SYNE2-228ENST00000639659 K7ELQ4 463 aaPredicted RBP15.69■□□□□ 0.1
SYNE2-228ENST00000639659 PDXKO00764 312 aa15.69■□□□□ 0.1
SYNE2-228ENST00000639659 IKBKBO14920 756 aa15.69■□□□□ 0.1
SYNE2-228ENST00000639659 IGLV3-19P01714 112 aa15.69■□□□□ 0.1
SYNE2-228ENST00000639659 DNTTP04053 509 aa15.69■□□□□ 0.1
SYNE2-228ENST00000639659 NR2F2P24468 414 aa15.69■□□□□ 0.1
SYNE2-228ENST00000639659 GRK6P43250 576 aa15.69■□□□□ 0.1
SYNE2-228ENST00000639659 PPP3CAQ08209 521 aa15.69■□□□□ 0.1
SYNE2-228ENST00000639659 MPPE1Q53F39 396 aa15.69■□□□□ 0.1
SYNE2-228ENST00000639659 RESP18Q5W5W9 173 aa15.69■□□□□ 0.1
SYNE2-228ENST00000639659 PIGZQ86VD9 579 aa15.69■□□□□ 0.1
SYNE2-228ENST00000639659 FMNL3Q8IVF7 1028 aa15.69■□□□□ 0.1
SYNE2-228ENST00000639659 CPXM2Q8N436 756 aa15.69■□□□□ 0.1
SYNE2-228ENST00000639659 ENGASEQ8NFI3 743 aa15.69■□□□□ 0.1
SYNE2-228ENST00000639659 PLD4Q96BZ4 506 aa15.69■□□□□ 0.1
SYNE2-228ENST00000639659 PAGE5Q96GU1 130 aa15.69■□□□□ 0.1
SYNE2-228ENST00000639659 BTBD1Q9H0C5 482 aa15.69■□□□□ 0.1
SYNE2-228ENST00000639659 ABCB8Q9NUT2 735 aa15.69■□□□□ 0.1
SYNE2-228ENST00000639659 FTSJ1Q9UET6 329 aa15.69■□□□□ 0.1
SYNE2-228ENST00000639659 MAPK8IP1Q9UQF2 711 aa15.69■□□□□ 0.1
SYNE2-228ENST00000639659 USP3Q9Y6I4 520 aa15.69■□□□□ 0.1
SYNE2-228ENST00000639659 H0Y8X5 98 aa15.68■□□□□ 0.1
SYNE2-228ENST00000639659 TNFSF14O43557 240 aa15.68■□□□□ 0.1
SYNE2-228ENST00000639659 HOXD9P28356 352 aaPredicted RBP15.68■□□□□ 0.1
SYNE2-228ENST00000639659 HLA-FP30511 346 aa15.68■□□□□ 0.1
SYNE2-228ENST00000639659 HARS2P49590 506 aaKnown RBP15.68■□□□□ 0.1
SYNE2-228ENST00000639659 TKTL1P51854 596 aa15.68■□□□□ 0.1
SYNE2-228ENST00000639659 C21orf59P57076 290 aa15.68■□□□□ 0.1
SYNE2-228ENST00000639659 SLC8A3P57103 927 aa15.68■□□□□ 0.1
SYNE2-228ENST00000639659 CAMK2GQ13555 558 aaPredicted RBP15.68■□□□□ 0.1
SYNE2-228ENST00000639659 GOLGA7BQ2TAP0 167 aa15.68■□□□□ 0.1
SYNE2-228ENST00000639659 TTC31Q49AM3 519 aaPredicted RBP15.68■□□□□ 0.1
SYNE2-228ENST00000639659 FAM186BQ8IYM0 893 aa15.68■□□□□ 0.1
SYNE2-228ENST00000639659 C1orf216Q8TAB5 229 aa15.68■□□□□ 0.1
SYNE2-228ENST00000639659 PIP4K2CQ8TBX8 421 aa15.68■□□□□ 0.1
SYNE2-228ENST00000639659 RNF139Q8WU17 664 aa15.68■□□□□ 0.1
SYNE2-228ENST00000639659 EDEM1Q92611 657 aa15.68■□□□□ 0.1
SYNE2-228ENST00000639659 BIRC7Q96CA5 298 aa15.68■□□□□ 0.1
SYNE2-228ENST00000639659 SLC2A11Q9BYW1 496 aa15.68■□□□□ 0.1
SYNE2-228ENST00000639659 ULBP1Q9BZM6 244 aa15.68■□□□□ 0.1
SYNE2-228ENST00000639659 SCUBE2Q9NQ36 999 aa15.68■□□□□ 0.1
SYNE2-228ENST00000639659 SFMBT1Q9UHJ3 866 aa15.68■□□□□ 0.1
SYNE2-228ENST00000639659 URB1O60287 2271 aaKnown RBP15.68■□□□□ 0.1
SYNE2-228ENST00000639659 TP53BP1Q12888 1972 aaPredicted RBP15.67■□□□□ 0.1
SYNE2-228ENST00000639659 KNL1Q8NG31 2342 aa15.67■□□□□ 0.1
SYNE2-228ENST00000639659 CELSR3Q9NYQ7 3312 aa15.67■□□□□ 0.1
SYNE2-228ENST00000639659 TIMM44O43615 452 aa15.67■□□□□ 0.1
SYNE2-228ENST00000639659 ACTN4O43707 911 aaKnown RBP15.67■□□□□ 0.1
SYNE2-228ENST00000639659 SLFN14P0C7P3 912 aa15.67■□□□□ 0.1
SYNE2-228ENST00000639659 GRIA4P48058 902 aa15.67■□□□□ 0.1
SYNE2-228ENST00000639659 BCAT1P54687 386 aa15.67■□□□□ 0.1
SYNE2-228ENST00000639659 CLDN6P56747 220 aa15.67■□□□□ 0.1
SYNE2-228ENST00000639659 INAVAQ3KP66 663 aa15.67■□□□□ 0.1
SYNE2-228ENST00000639659 PRAMEF14Q5SWL7 426 aa15.67■□□□□ 0.1
SYNE2-228ENST00000639659 INTS8Q75QN2 995 aaKnown RBP15.67■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms