RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 NBL1P41271 181 aa4.11□□□□□ -1.75
SCN1A-214ENST00000637038 BACE1P56817 501 aa4.11□□□□□ -1.75
SCN1A-214ENST00000637038 MYL6P60660 151 aa4.11□□□□□ -1.75
SCN1A-214ENST00000637038 RPL7AP62424 266 aaKnown RBP4.11□□□□□ -1.75
SCN1A-214ENST00000637038 PDE1BQ01064 536 aa4.11□□□□□ -1.75
SCN1A-214ENST00000637038 MAP3K10Q02779 954 aa4.11□□□□□ -1.75
SCN1A-214ENST00000637038 SLC18A2Q05940 514 aa4.11□□□□□ -1.75
SCN1A-214ENST00000637038 MGAT5Q09328 741 aa4.11□□□□□ -1.75
SCN1A-214ENST00000637038 WASHC5Q12768 1159 aa4.11□□□□□ -1.75
SCN1A-214ENST00000637038 OVGP1Q12889 678 aa4.11□□□□□ -1.75
SCN1A-214ENST00000637038 CBLBQ13191 982 aa4.11□□□□□ -1.75
SCN1A-214ENST00000637038 THOC5Q13769 683 aaKnown RBP4.11□□□□□ -1.75
SCN1A-214ENST00000637038 CYP4A22Q5TCH4 519 aa4.11□□□□□ -1.75
SCN1A-214ENST00000637038 OLFML2BQ68BL8 750 aa4.11□□□□□ -1.75
SCN1A-214ENST00000637038 SCYL2Q6P3W7 929 aa4.11□□□□□ -1.75
SCN1A-214ENST00000637038 Q7L0L9 218 aa4.11□□□□□ -1.75
SCN1A-214ENST00000637038 CCDC60Q8IWA6 550 aaPredicted RBP4.11□□□□□ -1.75
SCN1A-214ENST00000637038 GSDMBQ8TAX9 411 aa4.11□□□□□ -1.75
SCN1A-214ENST00000637038 ZNF516Q92618 1163 aa4.11□□□□□ -1.75
SCN1A-214ENST00000637038 AGAP3Q96P47 875 aa4.11□□□□□ -1.75
SCN1A-214ENST00000637038 KCNK16Q96T55 309 aa4.11□□□□□ -1.75
SCN1A-214ENST00000637038 MTMR12Q9C0I1 747 aa4.11□□□□□ -1.75
SCN1A-214ENST00000637038 DENND2DQ9H6A0 471 aaPredicted RBP4.11□□□□□ -1.75
SCN1A-214ENST00000637038 DHX33Q9H6R0 707 aaKnown RBP4.11□□□□□ -1.75
SCN1A-214ENST00000637038 APOBEC3GQ9HC16 384 aaKnown RBP4.11□□□□□ -1.75
SCN1A-214ENST00000637038 XPNPEP1Q9NQW7 623 aa4.11□□□□□ -1.75
SCN1A-214ENST00000637038 THAP1Q9NVV9 213 aa4.11□□□□□ -1.75
SCN1A-214ENST00000637038 MKS1Q9NXB0 559 aa4.11□□□□□ -1.75
SCN1A-214ENST00000637038 SSX2IPQ9Y2D8 614 aa4.11□□□□□ -1.75
SCN1A-214ENST00000637038 HTTP42858 3142 aa4.11□□□□□ -1.75
SCN1A-214ENST00000637038 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP4.11□□□□□ -1.75
SCN1A-214ENST00000637038 A0A1W2PPM1 405 aa4.11□□□□□ -1.75
SCN1A-214ENST00000637038 INO80B-WBP1J3KQ70 363 aa4.11□□□□□ -1.75
SCN1A-214ENST00000637038 ZNF862O60290 1169 aa4.11□□□□□ -1.75
SCN1A-214ENST00000637038 SLC25A27O95847 323 aa4.11□□□□□ -1.75
SCN1A-214ENST00000637038 ERBB2P04626 1255 aa4.11□□□□□ -1.75
SCN1A-214ENST00000637038 ENO1P06733 434 aaKnown RBP4.11□□□□□ -1.75
SCN1A-214ENST00000637038 FESP07332 822 aa4.11□□□□□ -1.75
SCN1A-214ENST00000637038 TGFB3P10600 412 aa4.11□□□□□ -1.75
SCN1A-214ENST00000637038 ETS1P14921 441 aa4.11□□□□□ -1.75
SCN1A-214ENST00000637038 PDGFRAP16234 1089 aa4.11□□□□□ -1.75
SCN1A-214ENST00000637038 SLC26A2P50443 739 aa4.11□□□□□ -1.75
SCN1A-214ENST00000637038 PAPOLAP51003 745 aaKnown RBP4.11□□□□□ -1.75
SCN1A-214ENST00000637038 ZNF143P52747 638 aaPredicted RBP4.11□□□□□ -1.75
SCN1A-214ENST00000637038 ROR2Q01974 943 aaKnown RBP4.11□□□□□ -1.75
SCN1A-214ENST00000637038 FAAP100Q0VG06 881 aa4.11□□□□□ -1.75
SCN1A-214ENST00000637038 SMAD4Q13485 552 aaKnown RBP4.11□□□□□ -1.75
SCN1A-214ENST00000637038 NOMO1Q15155 1222 aa4.11□□□□□ -1.75
SCN1A-214ENST00000637038 CHI3L2Q15782 390 aa4.11□□□□□ -1.75
SCN1A-214ENST00000637038 ATF7IP2Q5U623 682 aa4.11□□□□□ -1.75
SCN1A-214ENST00000637038 CASC4Q6P4E1 433 aa4.11□□□□□ -1.75
SCN1A-214ENST00000637038 SETD3Q86TU7 594 aaPredicted RBP4.11□□□□□ -1.75
SCN1A-214ENST00000637038 PRPF39Q86UA1 669 aaKnown RBP4.11□□□□□ -1.75
SCN1A-214ENST00000637038 TRIM74Q86UV6 250 aa4.11□□□□□ -1.75
SCN1A-214ENST00000637038 TRIM73Q86UV7 250 aa4.11□□□□□ -1.75
SCN1A-214ENST00000637038 TRIM50Q86XT4 487 aa4.11□□□□□ -1.75
SCN1A-214ENST00000637038 SLC4A11Q8NBS3 891 aa4.11□□□□□ -1.75
SCN1A-214ENST00000637038 MCUQ8NE86 351 aa4.11□□□□□ -1.75
SCN1A-214ENST00000637038 GABPB2Q8TAK5 448 aaPredicted RBP4.11□□□□□ -1.75
SCN1A-214ENST00000637038 SCG3Q8WXD2 468 aaKnown RBP4.11□□□□□ -1.75
SCN1A-214ENST00000637038 DHRS4Q9BTZ2 278 aa4.11□□□□□ -1.75
SCN1A-214ENST00000637038 INO80BQ9C086 356 aaPredicted RBP4.11□□□□□ -1.75
SCN1A-214ENST00000637038 KIF9Q9HAQ2 790 aa4.11□□□□□ -1.75
SCN1A-214ENST00000637038 MRPL40Q9NQ50 206 aaKnown RBP4.11□□□□□ -1.75
SCN1A-214ENST00000637038 PRMT7Q9NVM4 692 aaPredicted RBP4.11□□□□□ -1.75
SCN1A-214ENST00000637038 MORF4L1Q9UBU8 362 aa4.11□□□□□ -1.75
SCN1A-214ENST00000637038 DCDC2Q9UHG0 476 aa4.11□□□□□ -1.75
SCN1A-214ENST00000637038 TCRBV9S1A1TA0A576 114 aa4.1□□□□□ -1.75
SCN1A-214ENST00000637038 TCRBV5S1A1TA0A578 114 aa4.1□□□□□ -1.75
SCN1A-214ENST00000637038 TMEM221A6NGB7 291 aa4.1□□□□□ -1.75
SCN1A-214ENST00000637038 H3BRJ5 948 aa4.1□□□□□ -1.75
SCN1A-214ENST00000637038 M0R296 226 aa4.1□□□□□ -1.75
SCN1A-214ENST00000637038 AP3B1O00203 1094 aa4.1□□□□□ -1.75
SCN1A-214ENST00000637038 B4GALT4O60513 344 aa4.1□□□□□ -1.75
SCN1A-214ENST00000637038 SNUPNO95149 360 aaKnown RBP4.1□□□□□ -1.75
SCN1A-214ENST00000637038 TRUB2O95900 331 aaKnown RBP4.1□□□□□ -1.75
SCN1A-214ENST00000637038 APOEP02649 317 aa4.1□□□□□ -1.75
SCN1A-214ENST00000637038 CYP2C8P10632 490 aa4.1□□□□□ -1.75
SCN1A-214ENST00000637038 NR2C2P49116 596 aa4.1□□□□□ -1.75
SCN1A-214ENST00000637038 NEK3P51956 506 aa4.1□□□□□ -1.75
SCN1A-214ENST00000637038 RAP1GDS1P52306 607 aa4.1□□□□□ -1.75
SCN1A-214ENST00000637038 COPAP53621 1224 aa4.1□□□□□ -1.75
SCN1A-214ENST00000637038 RPL26P61254 145 aaKnown RBP4.1□□□□□ -1.75
SCN1A-214ENST00000637038 RBP5P82980 135 aa4.1□□□□□ -1.75
SCN1A-214ENST00000637038 FASTKD3Q14CZ7 662 aaKnown RBP4.1□□□□□ -1.75
SCN1A-214ENST00000637038 PRKD1Q15139 912 aaPredicted RBP4.1□□□□□ -1.75
SCN1A-214ENST00000637038 PDCD2Q16342 344 aaPredicted RBP4.1□□□□□ -1.75
SCN1A-214ENST00000637038 HEATR6Q6AI08 1181 aaKnown RBP4.1□□□□□ -1.75
SCN1A-214ENST00000637038 DPH6Q7L8W6 267 aa4.1□□□□□ -1.75
SCN1A-214ENST00000637038 C11orf74Q86VG3 221 aa4.1□□□□□ -1.75
SCN1A-214ENST00000637038 NT5DC4Q86YG4 428 aa4.1□□□□□ -1.75
SCN1A-214ENST00000637038 ZDHHC17Q8IUH5 632 aa4.1□□□□□ -1.75
SCN1A-214ENST00000637038 ARID3BQ8IVW6 561 aaPredicted RBP4.1□□□□□ -1.75
SCN1A-214ENST00000637038 TAB3Q8N5C8 712 aaPredicted RBP4.1□□□□□ -1.75
SCN1A-214ENST00000637038 DCAKDQ8WVC6 231 aa4.1□□□□□ -1.75
SCN1A-214ENST00000637038 KLF6Q99612 283 aaPredicted RBP4.1□□□□□ -1.75
SCN1A-214ENST00000637038 CADM1Q9BY67 442 aaKnown RBP4.1□□□□□ -1.75
SCN1A-214ENST00000637038 SENP6Q9GZR1 1112 aaPredicted RBP4.1□□□□□ -1.75
SCN1A-214ENST00000637038 AP5M1Q9H0R1 490 aa4.1□□□□□ -1.75
SCN1A-214ENST00000637038 RMI1Q9H9A7 625 aa4.1□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms