RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 TMEM121Q9BTD3 319 aa20.83■□□□□ 0.92
CLN3-250ENST00000636839 ARHGEF4Q9NR80 690 aa20.83■□□□□ 0.92
CLN3-250ENST00000636839 ARHGEF38Q9NXL2 777 aa20.83■□□□□ 0.92
CLN3-250ENST00000636839 OR12D3Q9UGF7 316 aa20.83■□□□□ 0.92
CLN3-250ENST00000636839 RASAL2Q9UJF2 1139 aa20.83■□□□□ 0.92
CLN3-250ENST00000636839 RWDD3Q9Y3V2 267 aa20.83■□□□□ 0.92
CLN3-250ENST00000636839 C2orf78A6NCI8 922 aa20.82■□□□□ 0.92
CLN3-250ENST00000636839 KCNU1A8MYU2 1149 aa20.82■□□□□ 0.92
CLN3-250ENST00000636839 APOL1O14791 398 aa20.82■□□□□ 0.92
CLN3-250ENST00000636839 DAPK3O43293 454 aa20.82■□□□□ 0.92
CLN3-250ENST00000636839 ETS1P14921 441 aa20.82■□□□□ 0.92
CLN3-250ENST00000636839 EPHB3P54753 998 aa20.82■□□□□ 0.92
CLN3-250ENST00000636839 NRLP54845 237 aa20.82■□□□□ 0.92
CLN3-250ENST00000636839 ARL13BQ3SXY8 428 aa20.82■□□□□ 0.92
CLN3-250ENST00000636839 ZC3H18Q86VM9 953 aaKnown RBP20.82■□□□□ 0.92
CLN3-250ENST00000636839 TP53INP2Q8IXH6 220 aa20.82■□□□□ 0.92
CLN3-250ENST00000636839 SLC35B2Q8TB61 432 aa20.82■□□□□ 0.92
CLN3-250ENST00000636839 GDAP1L1Q96MZ0 367 aa20.82■□□□□ 0.92
CLN3-250ENST00000636839 TGS1Q96RS0 853 aaKnown RBP20.82■□□□□ 0.92
CLN3-250ENST00000636839 GDF15Q99988 308 aa20.82■□□□□ 0.92
CLN3-250ENST00000636839 EMILIN2Q9BXX0 1053 aa20.82■□□□□ 0.92
CLN3-250ENST00000636839 SLC12A8A0AV02 714 aa20.82■□□□□ 0.92
CLN3-250ENST00000636839 BHMG1C9JSJ3 638 aaPredicted RBP20.82■□□□□ 0.92
CLN3-250ENST00000636839 APOC4-APOC2K7ER74 178 aa20.82■□□□□ 0.92
CLN3-250ENST00000636839 APOC2P02655 101 aa20.82■□□□□ 0.92
CLN3-250ENST00000636839 C8AP07357 584 aa20.82■□□□□ 0.92
CLN3-250ENST00000636839 ZSCAN5DPP0CG00 497 aa20.82■□□□□ 0.92
CLN3-250ENST00000636839 CCR1P32246 355 aa20.82■□□□□ 0.92
CLN3-250ENST00000636839 PSEN1P49768 467 aa20.82■□□□□ 0.92
CLN3-250ENST00000636839 TBX4P57082 545 aa20.82■□□□□ 0.92
CLN3-250ENST00000636839 DHX34Q14147 1143 aaKnown RBP20.82■□□□□ 0.92
CLN3-250ENST00000636839 OASLQ15646 514 aaKnown RBP20.82■□□□□ 0.92
CLN3-250ENST00000636839 ARTNQ5T4W7 220 aa20.82■□□□□ 0.92
CLN3-250ENST00000636839 HS6ST3Q8IZP7 471 aa20.82■□□□□ 0.92
CLN3-250ENST00000636839 ATL2Q8NHH9 583 aa20.82■□□□□ 0.92
CLN3-250ENST00000636839 PSMG2Q969U7 264 aa20.82■□□□□ 0.92
CLN3-250ENST00000636839 SLC39A13Q96H72 371 aa20.82■□□□□ 0.92
CLN3-250ENST00000636839 CEP295NLQ96MC4 621 aa20.82■□□□□ 0.92
CLN3-250ENST00000636839 SERPINB11Q96P15 392 aa20.82■□□□□ 0.92
CLN3-250ENST00000636839 RNF38Q9H0F5 515 aa20.82■□□□□ 0.92
CLN3-250ENST00000636839 NKX2-4Q9H2Z4 354 aa20.82■□□□□ 0.92
CLN3-250ENST00000636839 ZNF148Q9UQR1 794 aa20.82■□□□□ 0.92
CLN3-250ENST00000636839 TLR6Q9Y2C9 796 aa20.82■□□□□ 0.92
CLN3-250ENST00000636839 SNX24Q9Y343 169 aa20.82■□□□□ 0.92
CLN3-250ENST00000636839 PCDHA11Q9Y5I1 949 aa20.82■□□□□ 0.92
CLN3-250ENST00000636839 EEF2KO00418 725 aaKnown RBP20.81■□□□□ 0.92
CLN3-250ENST00000636839 ECEL1O95672 775 aa20.81■□□□□ 0.92
CLN3-250ENST00000636839 SRGAP2BP0DMP2 458 aa20.81■□□□□ 0.92
CLN3-250ENST00000636839 ARL4AP40617 200 aa20.81■□□□□ 0.92
CLN3-250ENST00000636839 CLCN4P51793 760 aa20.81■□□□□ 0.92
CLN3-250ENST00000636839 VCPP55072 806 aaKnown RBP20.81■□□□□ 0.92
CLN3-250ENST00000636839 TFDP2Q14188 446 aa20.81■□□□□ 0.92
CLN3-250ENST00000636839 VEPH1Q14D04 833 aa20.81■□□□□ 0.92
CLN3-250ENST00000636839 NCBP2-AS2Q69YL0 99 aa20.81■□□□□ 0.92
CLN3-250ENST00000636839 RFX8Q6ZV50 586 aa20.81■□□□□ 0.92
CLN3-250ENST00000636839 ERP44Q9BS26 406 aa20.81■□□□□ 0.92
CLN3-250ENST00000636839 NFU1Q9UMS0 254 aa20.81■□□□□ 0.92
CLN3-250ENST00000636839 NEU2Q9Y3R4 380 aa20.81■□□□□ 0.92
CLN3-250ENST00000636839 COCHO43405 550 aa20.8■□□□□ 0.92
CLN3-250ENST00000636839 RFPL2O75678 378 aa20.8■□□□□ 0.92
CLN3-250ENST00000636839 LRIG2O94898 1065 aa20.8■□□□□ 0.92
CLN3-250ENST00000636839 GLUD1P00367 558 aa20.8■□□□□ 0.92
CLN3-250ENST00000636839 VPS41P49754 854 aa20.8■□□□□ 0.92
CLN3-250ENST00000636839 GDF10P55107 478 aa20.8■□□□□ 0.92
CLN3-250ENST00000636839 ERVK-21P61565 698 aa20.8■□□□□ 0.92
CLN3-250ENST00000636839 GPM6BQ13491 265 aa20.8■□□□□ 0.92
CLN3-250ENST00000636839 DPYSQ14117 519 aa20.8■□□□□ 0.92
CLN3-250ENST00000636839 C14orf80Q86SX3 495 aa20.8■□□□□ 0.92
CLN3-250ENST00000636839 RBM23Q86U06 439 aaKnown RBP20.8■□□□□ 0.92
CLN3-250ENST00000636839 P3H4Q92791 437 aa20.8■□□□□ 0.92
CLN3-250ENST00000636839 CYP2S1Q96SQ9 504 aa20.8■□□□□ 0.92
CLN3-250ENST00000636839 NEUROG2Q9H2A3 272 aa20.8■□□□□ 0.92
CLN3-250ENST00000636839 HOMER3Q9NSC5 361 aa20.8■□□□□ 0.92
CLN3-250ENST00000636839 TNRC18O15417 2968 aaPredicted RBP20.8■□□□□ 0.92
CLN3-250ENST00000636839 CCL16O15467 120 aa20.8■□□□□ 0.92
CLN3-250ENST00000636839 RB1P06400 928 aa20.8■□□□□ 0.92
CLN3-250ENST00000636839 EPCAMP16422 314 aa20.8■□□□□ 0.92
CLN3-250ENST00000636839 KCNQ1P51787 676 aa20.8■□□□□ 0.92
CLN3-250ENST00000636839 AIF1P55008 147 aa20.8■□□□□ 0.92
CLN3-250ENST00000636839 EIF3EP60228 445 aaKnown RBP20.8■□□□□ 0.92
CLN3-250ENST00000636839 PPP2R5DQ14738 602 aa20.8■□□□□ 0.92
CLN3-250ENST00000636839 PPP1R7Q15435 360 aa20.8■□□□□ 0.92
CLN3-250ENST00000636839 DUPD1Q68J44 220 aa20.8■□□□□ 0.92
CLN3-250ENST00000636839 VSIG1Q86XK7 387 aa20.8■□□□□ 0.92
CLN3-250ENST00000636839 IFT20Q8IY31 132 aa20.8■□□□□ 0.92
CLN3-250ENST00000636839 TNS4Q8IZW8 715 aa20.8■□□□□ 0.92
CLN3-250ENST00000636839 NKD2Q969F2 451 aaPredicted RBP20.8■□□□□ 0.92
CLN3-250ENST00000636839 TRMT2BQ96GJ1 504 aaKnown RBP20.8■□□□□ 0.92
CLN3-250ENST00000636839 SLC22A12Q96S37 553 aa20.8■□□□□ 0.92
CLN3-250ENST00000636839 IL21Q9HBE4 155 aa20.8■□□□□ 0.92
CLN3-250ENST00000636839 TRPM5Q9NZQ8 1165 aa20.8■□□□□ 0.92
CLN3-250ENST00000636839 UTP11Q9Y3A2 253 aaKnown RBP20.8■□□□□ 0.92
CLN3-250ENST00000636839 TRANK1O15050 2925 aa20.79■□□□□ 0.92
CLN3-250ENST00000636839 FAM187AA6NFU0 413 aa20.79■□□□□ 0.92
CLN3-250ENST00000636839 EPOPA6NHQ4 379 aa20.79■□□□□ 0.92
CLN3-250ENST00000636839 H3BRJ5 948 aa20.79■□□□□ 0.92
CLN3-250ENST00000636839 ECHS1P30084 290 aa20.79■□□□□ 0.92
CLN3-250ENST00000636839 RPL21P46778 160 aaKnown RBP20.79■□□□□ 0.92
CLN3-250ENST00000636839 UBE3AQ05086 875 aa20.79■□□□□ 0.92
CLN3-250ENST00000636839 NOMO1Q15155 1222 aa20.79■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms