RNA–Protein interactions for RNA: ENST00000624887.1

PCDHB11-202, Transcript of protocadherin beta 11, humanhuman

TSL 2 BASIC

Gene PCDHB11, Length 1,973 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB11-202ENST00000624887 CA4P22748 312 aa20.37■□□□□ 0.85
PCDHB11-202ENST00000624887 PAX3P23760 479 aa20.37■□□□□ 0.85
PCDHB11-202ENST00000624887 YY1P25490 414 aa20.37■□□□□ 0.85
PCDHB11-202ENST00000624887 FOXN2P32314 431 aa20.37■□□□□ 0.85
PCDHB11-202ENST00000624887 RPA3P35244 121 aaPredicted RBP20.37■□□□□ 0.85
PCDHB11-202ENST00000624887 ADRA1BP35368 520 aa20.37■□□□□ 0.85
PCDHB11-202ENST00000624887 SEMA5AQ13591 1074 aa20.37■□□□□ 0.85
PCDHB11-202ENST00000624887 TRIM71Q2Q1W2 868 aaKnown RBP20.37■□□□□ 0.85
PCDHB11-202ENST00000624887 KBTBD12Q3ZCT8 623 aa20.37■□□□□ 0.85
PCDHB11-202ENST00000624887 LACTB2Q53H82 288 aaPredicted RBP20.37■□□□□ 0.85
PCDHB11-202ENST00000624887 FAM171BQ6P995 826 aa20.37■□□□□ 0.85
PCDHB11-202ENST00000624887 CD300LGQ6UXG3 332 aa20.37■□□□□ 0.85
PCDHB11-202ENST00000624887 METTL23Q86XA0 190 aa20.37■□□□□ 0.85
PCDHB11-202ENST00000624887 SLC44A1Q8WWI5 657 aa20.37■□□□□ 0.85
PCDHB11-202ENST00000624887 MYLPFQ96A32 169 aa20.37■□□□□ 0.85
PCDHB11-202ENST00000624887 USP15Q9Y4E8 981 aaPredicted RBP20.37■□□□□ 0.85
PCDHB11-202ENST00000624887 A0A0A0MRY4 1105 aa20.37■□□□□ 0.85
PCDHB11-202ENST00000624887 I3L4J1 428 aa20.37■□□□□ 0.85
PCDHB11-202ENST00000624887 LTFP02788 710 aa20.37■□□□□ 0.85
PCDHB11-202ENST00000624887 SCAPQ12770 1279 aa20.37■□□□□ 0.85
PCDHB11-202ENST00000624887 TUSC3Q13454 348 aa20.37■□□□□ 0.85
PCDHB11-202ENST00000624887 ITGA7Q13683 1181 aa20.37■□□□□ 0.85
PCDHB11-202ENST00000624887 DPYSQ14117 519 aa20.37■□□□□ 0.85
PCDHB11-202ENST00000624887 PAFAH1B3Q15102 231 aaKnown RBP20.37■□□□□ 0.85
PCDHB11-202ENST00000624887 ZNF534Q76KX8 674 aa20.37■□□□□ 0.85
PCDHB11-202ENST00000624887 BHLHA9Q7RTU4 235 aa20.37■□□□□ 0.85
PCDHB11-202ENST00000624887 MICALL1Q8N3F8 863 aa20.37■□□□□ 0.85
PCDHB11-202ENST00000624887 SPATA13Q96N96 652 aa20.37■□□□□ 0.85
PCDHB11-202ENST00000624887 LGMNQ99538 433 aa20.37■□□□□ 0.85
PCDHB11-202ENST00000624887 ACTR5Q9H9F9 607 aaPredicted RBP20.37■□□□□ 0.85
PCDHB11-202ENST00000624887 TRMT13Q9NUP7 481 aaKnown RBP20.37■□□□□ 0.85
PCDHB11-202ENST00000624887 RRN3Q9NYV6 651 aa20.37■□□□□ 0.85
PCDHB11-202ENST00000624887 ZC3H7BQ9UGR2 993 aaKnown RBP20.37■□□□□ 0.85
PCDHB11-202ENST00000624887 DSEQ9UL01 958 aa20.37■□□□□ 0.85
PCDHB11-202ENST00000624887 ZNF638Q14966 1978 aaKnown RBP20.37■□□□□ 0.85
PCDHB11-202ENST00000624887 M0QZQ0 153 aa20.36■□□□□ 0.85
PCDHB11-202ENST00000624887 CREB3O43889 395 aa20.36■□□□□ 0.85
PCDHB11-202ENST00000624887 C1QAP02745 245 aa20.36■□□□□ 0.85
PCDHB11-202ENST00000624887 NCAM1P13591 858 aa20.36■□□□□ 0.85
PCDHB11-202ENST00000624887 GBP2P32456 591 aaPredicted RBP20.36■□□□□ 0.85
PCDHB11-202ENST00000624887 BRCC3P46736 316 aa20.36■□□□□ 0.85
PCDHB11-202ENST00000624887 PRKD1Q15139 912 aaPredicted RBP20.36■□□□□ 0.85
PCDHB11-202ENST00000624887 INTS6LQ5JSJ4 861 aaKnown RBP20.36■□□□□ 0.85
PCDHB11-202ENST00000624887 ANKRD20A2Q5SQ80 823 aa20.36■□□□□ 0.85
PCDHB11-202ENST00000624887 ANKRD20A1Q5TYW2 823 aa20.36■□□□□ 0.85
PCDHB11-202ENST00000624887 ANKRD20A3Q5VUR7 823 aa20.36■□□□□ 0.85
PCDHB11-202ENST00000624887 RFX8Q6ZV50 586 aa20.36■□□□□ 0.85
PCDHB11-202ENST00000624887 ALKBH8Q96BT7 664 aaKnown RBP20.36■□□□□ 0.85
PCDHB11-202ENST00000624887 CFAP36Q96G28 342 aa20.36■□□□□ 0.85
PCDHB11-202ENST00000624887 UROC1Q96N76 676 aa20.36■□□□□ 0.85
PCDHB11-202ENST00000624887 PAIP2Q9BPZ3 127 aaKnown RBP20.36■□□□□ 0.85
PCDHB11-202ENST00000624887 NOD1Q9Y239 953 aa20.36■□□□□ 0.85
PCDHB11-202ENST00000624887 TTLL3Q9Y4R7 772 aa20.36■□□□□ 0.85
PCDHB11-202ENST00000624887 SQORQ9Y6N5 450 aa20.36■□□□□ 0.85
PCDHB11-202ENST00000624887 IQANK1A0A1B0GTG1 560 aa20.35■□□□□ 0.85
PCDHB11-202ENST00000624887 EEF2KO00418 725 aaKnown RBP20.35■□□□□ 0.85
PCDHB11-202ENST00000624887 TRDMT1O14717 391 aaKnown RBP20.35■□□□□ 0.85
PCDHB11-202ENST00000624887 ZWINTO95229 277 aa20.35■□□□□ 0.85
PCDHB11-202ENST00000624887 GSTA2P09210 222 aa20.35■□□□□ 0.85
PCDHB11-202ENST00000624887 FDFT1P37268 417 aa20.35■□□□□ 0.85
PCDHB11-202ENST00000624887 GLUD2P49448 558 aa20.35■□□□□ 0.85
PCDHB11-202ENST00000624887 ACTN3Q08043 901 aaPredicted RBP20.35■□□□□ 0.85
PCDHB11-202ENST00000624887 PDK1Q15118 436 aa20.35■□□□□ 0.85
PCDHB11-202ENST00000624887 PAN2Q504Q3 1202 aaKnown RBP20.35■□□□□ 0.85
PCDHB11-202ENST00000624887 RGS9BPQ6ZS82 235 aa20.35■□□□□ 0.85
PCDHB11-202ENST00000624887 ADAM32Q8TC27 787 aa20.35■□□□□ 0.85
PCDHB11-202ENST00000624887 XAB2Q9HCS7 855 aaKnown RBP20.35■□□□□ 0.85
PCDHB11-202ENST00000624887 FBXW11Q9UKB1 542 aa20.35■□□□□ 0.85
PCDHB11-202ENST00000624887 IKBKGQ9Y6K9 419 aa20.35■□□□□ 0.85
PCDHB11-202ENST00000624887 THSD7BQ9C0I4 1608 aa20.35■□□□□ 0.85
PCDHB11-202ENST00000624887 DCLK1O15075 740 aa20.35■□□□□ 0.85
PCDHB11-202ENST00000624887 CABYRO75952 493 aa20.35■□□□□ 0.85
PCDHB11-202ENST00000624887 IBSPP21815 317 aaPredicted RBP20.35■□□□□ 0.85
PCDHB11-202ENST00000624887 SF3A3Q12874 501 aaKnown RBP eCLIP20.35■□□□□ 0.85
PCDHB11-202ENST00000624887 SEMA3BQ13214 749 aa20.35■□□□□ 0.85
PCDHB11-202ENST00000624887 SLC1A5Q15758 541 aa20.35■□□□□ 0.85
PCDHB11-202ENST00000624887 ZNF598Q86UK7 904 aaKnown RBP20.35■□□□□ 0.85
PCDHB11-202ENST00000624887 ECHDC2Q86YB7 292 aa20.35■□□□□ 0.85
PCDHB11-202ENST00000624887 IRGQQ8WZA9 623 aa20.35■□□□□ 0.85
PCDHB11-202ENST00000624887 SIGLEC10Q96LC7 697 aa20.35■□□□□ 0.85
PCDHB11-202ENST00000624887 PKMYT1Q99640 499 aa20.35■□□□□ 0.85
PCDHB11-202ENST00000624887 RHOBTB2Q9BYZ6 727 aa20.35■□□□□ 0.85
PCDHB11-202ENST00000624887 PLAC1Q9HBJ0 212 aa20.35■□□□□ 0.85
PCDHB11-202ENST00000624887 INPP5FQ9Y2H2 1132 aa20.35■□□□□ 0.85
PCDHB11-202ENST00000624887 STK10O94804 968 aaKnown RBP20.34■□□□□ 0.85
PCDHB11-202ENST00000624887 SUN1O94901 812 aa20.34■□□□□ 0.85
PCDHB11-202ENST00000624887 F9P00740 461 aa20.34■□□□□ 0.85
PCDHB11-202ENST00000624887 INHBAP08476 426 aa20.34■□□□□ 0.85
PCDHB11-202ENST00000624887 PRKCHP24723 683 aa20.34■□□□□ 0.85
PCDHB11-202ENST00000624887 CDK16Q00536 496 aa20.34■□□□□ 0.85
PCDHB11-202ENST00000624887 MTFR1Q15390 333 aa20.34■□□□□ 0.85
PCDHB11-202ENST00000624887 ZKSCAN8Q15776 578 aaPredicted RBP20.34■□□□□ 0.85
PCDHB11-202ENST00000624887 PDK4Q16654 411 aa20.34■□□□□ 0.85
PCDHB11-202ENST00000624887 SPRED3Q2MJR0 410 aa20.34■□□□□ 0.85
PCDHB11-202ENST00000624887 PM20D1Q6GTS8 502 aa20.34■□□□□ 0.85
PCDHB11-202ENST00000624887 SPATA21Q7Z572 469 aa20.34■□□□□ 0.85
PCDHB11-202ENST00000624887 PRPF39Q86UA1 669 aaKnown RBP20.34■□□□□ 0.85
PCDHB11-202ENST00000624887 RSPH1Q8WYR4 309 aa20.34■□□□□ 0.85
PCDHB11-202ENST00000624887 GRAMD1AQ96CP6 724 aa20.34■□□□□ 0.85
PCDHB11-202ENST00000624887 P2RY11Q96G91 374 aa20.34■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms