RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 LACRTQ9GZZ8 138 aa20.49■□□□□ 0.87
UPF3A-211ENST00000618700 RAB6CQ9H0N0 254 aa20.49■□□□□ 0.87
UPF3A-211ENST00000618700 COX16Q9P0S2 106 aa20.49■□□□□ 0.87
UPF3A-211ENST00000618700 LSM7Q9UK45 103 aaKnown RBP20.49■□□□□ 0.87
UPF3A-211ENST00000618700 AGO1Q9UL18 857 aaKnown RBP20.49■□□□□ 0.87
UPF3A-211ENST00000618700 KCNU1A8MYU2 1149 aa20.48■□□□□ 0.87
UPF3A-211ENST00000618700 SCAMP3O14828 347 aaKnown RBP20.48■□□□□ 0.87
UPF3A-211ENST00000618700 LATS1O95835 1130 aa20.48■□□□□ 0.87
UPF3A-211ENST00000618700 SLC2A3P11169 496 aa20.48■□□□□ 0.87
UPF3A-211ENST00000618700 CCR1P32246 355 aa20.48■□□□□ 0.87
UPF3A-211ENST00000618700 HARS2P49590 506 aaKnown RBP20.48■□□□□ 0.87
UPF3A-211ENST00000618700 BRMS1LQ5PSV4 323 aa20.48■□□□□ 0.87
UPF3A-211ENST00000618700 UNC45BQ8IWX7 931 aa20.48■□□□□ 0.87
UPF3A-211ENST00000618700 BBS7Q8IWZ6 715 aa20.48■□□□□ 0.87
UPF3A-211ENST00000618700 FAM217AQ8IXS0 508 aa20.48■□□□□ 0.87
UPF3A-211ENST00000618700 GJD3Q8N144 294 aa20.48■□□□□ 0.87
UPF3A-211ENST00000618700 OSCP1Q8WVF1 389 aa20.48■□□□□ 0.87
UPF3A-211ENST00000618700 BTBD6Q96KE9 485 aa20.48■□□□□ 0.87
UPF3A-211ENST00000618700 FAM83CQ9BQN1 747 aa20.48■□□□□ 0.87
UPF3A-211ENST00000618700 TRMT61BQ9BVS5 477 aaKnown RBP20.48■□□□□ 0.87
UPF3A-211ENST00000618700 CD320Q9NPF0 282 aa20.48■□□□□ 0.87
UPF3A-211ENST00000618700 SLTMQ9NWH9 1034 aaKnown RBP eCLIP20.48■□□□□ 0.87
UPF3A-211ENST00000618700 THG1LQ9NWX6 298 aaKnown RBP20.48■□□□□ 0.87
UPF3A-211ENST00000618700 ARHGEF38Q9NXL2 777 aa20.48■□□□□ 0.87
UPF3A-211ENST00000618700 STOML2Q9UJZ1 356 aa20.48■□□□□ 0.87
UPF3A-211ENST00000618700 WNT6Q9Y6F9 365 aa20.48■□□□□ 0.87
UPF3A-211ENST00000618700 A0A0U1RQJ8 604 aa20.47■□□□□ 0.87
UPF3A-211ENST00000618700 ARNTLO00327 626 aa20.47■□□□□ 0.87
UPF3A-211ENST00000618700 CHADO15335 359 aa20.47■□□□□ 0.87
UPF3A-211ENST00000618700 APOEP02649 317 aa20.47■□□□□ 0.87
UPF3A-211ENST00000618700 ACAP1Q15027 740 aa20.47■□□□□ 0.87
UPF3A-211ENST00000618700 ARHGAP29Q52LW3 1261 aa20.47■□□□□ 0.87
UPF3A-211ENST00000618700 KIAA1328Q86T90 577 aa20.47■□□□□ 0.87
UPF3A-211ENST00000618700 FAM131BQ86XD5 332 aa20.47■□□□□ 0.87
UPF3A-211ENST00000618700 TXLNBQ8N3L3 684 aa20.47■□□□□ 0.87
UPF3A-211ENST00000618700 ARFGAP1Q8N6T3 406 aa20.47■□□□□ 0.87
UPF3A-211ENST00000618700 ATRIPQ8WXE1 791 aa20.47■□□□□ 0.87
UPF3A-211ENST00000618700 AZIN2Q96A70 460 aa20.47■□□□□ 0.87
UPF3A-211ENST00000618700 OTUB2Q96DC9 234 aa20.47■□□□□ 0.87
UPF3A-211ENST00000618700 ZNF830Q96NB3 372 aaPredicted RBP20.47■□□□□ 0.87
UPF3A-211ENST00000618700 TBC1D14Q9P2M4 693 aa20.47■□□□□ 0.87
UPF3A-211ENST00000618700 IP6K2Q9UHH9 426 aa20.47■□□□□ 0.87
UPF3A-211ENST00000618700 LCMT1Q9UIC8 334 aa20.47■□□□□ 0.87
UPF3A-211ENST00000618700 SALL4Q9UJQ4 1053 aa20.47■□□□□ 0.87
UPF3A-211ENST00000618700 ZNF510Q9Y2H8 683 aa20.47■□□□□ 0.87
UPF3A-211ENST00000618700 PAXBP1Q9Y5B6 917 aa20.47■□□□□ 0.87
UPF3A-211ENST00000618700 VCANP13611 3396 aa20.47■□□□□ 0.87
UPF3A-211ENST00000618700 COL4A2P08572 1712 aa20.47■□□□□ 0.87
UPF3A-211ENST00000618700 COL4A3Q01955 1670 aa20.46■□□□□ 0.87
UPF3A-211ENST00000618700 I6L893 689 aaPredicted RBP20.46■□□□□ 0.87
UPF3A-211ENST00000618700 MYO1FO00160 1098 aa20.46■□□□□ 0.87
UPF3A-211ENST00000618700 SLC9A3R1O14745 358 aaPredicted RBP20.46■□□□□ 0.87
UPF3A-211ENST00000618700 DESP17661 470 aa20.46■□□□□ 0.87
UPF3A-211ENST00000618700 TDGQ13569 410 aa20.46■□□□□ 0.87
UPF3A-211ENST00000618700 PIGHQ14442 188 aaPredicted RBP20.46■□□□□ 0.87
UPF3A-211ENST00000618700 PDGFRLQ15198 375 aa20.46■□□□□ 0.87
UPF3A-211ENST00000618700 EML3Q32P44 896 aa20.46■□□□□ 0.87
UPF3A-211ENST00000618700 CC2D1AQ6P1N0 951 aaPredicted RBP20.46■□□□□ 0.87
UPF3A-211ENST00000618700 SND1Q7KZF4 910 aaKnown RBP eCLIP20.46■□□□□ 0.87
UPF3A-211ENST00000618700 RNF135Q8IUD6 432 aa20.46■□□□□ 0.87
UPF3A-211ENST00000618700 DENND1CQ8IV53 801 aa20.46■□□□□ 0.87
UPF3A-211ENST00000618700 YAF2Q8IY57 180 aa20.46■□□□□ 0.87
UPF3A-211ENST00000618700 ZFYVE19Q96K21 471 aa20.46■□□□□ 0.87
UPF3A-211ENST00000618700 BTN2A3PQ96KV6 586 aa20.46■□□□□ 0.87
UPF3A-211ENST00000618700 ANLNQ9NQW6 1124 aa20.46■□□□□ 0.87
UPF3A-211ENST00000618700 DUS2Q9NX74 493 aaKnown RBP20.46■□□□□ 0.87
UPF3A-211ENST00000618700 TNFRSF10AO00220 468 aa20.45■□□□□ 0.86
UPF3A-211ENST00000618700 GFRA2O00451 464 aa20.45■□□□□ 0.86
UPF3A-211ENST00000618700 ACSL4O60488 711 aa20.45■□□□□ 0.86
UPF3A-211ENST00000618700 LRCH4O75427 683 aa20.45■□□□□ 0.86
UPF3A-211ENST00000618700 PROSCO94903 275 aa20.45■□□□□ 0.86
UPF3A-211ENST00000618700 CCDC175P0C221 793 aa20.45■□□□□ 0.86
UPF3A-211ENST00000618700 GDI1P31150 447 aa20.45■□□□□ 0.86
UPF3A-211ENST00000618700 MAN1A1P33908 653 aa20.45■□□□□ 0.86
UPF3A-211ENST00000618700 IFNAR2P48551 515 aa20.45■□□□□ 0.86
UPF3A-211ENST00000618700 SLC11A2P49281 568 aa20.45■□□□□ 0.86
UPF3A-211ENST00000618700 MTA1Q13330 715 aa20.45■□□□□ 0.86
UPF3A-211ENST00000618700 TRIM68Q6AZZ1 485 aa20.45■□□□□ 0.86
UPF3A-211ENST00000618700 ATP6V0D2Q8N8Y2 350 aa20.45■□□□□ 0.86
UPF3A-211ENST00000618700 RNF34Q969K3 372 aa20.45■□□□□ 0.86
UPF3A-211ENST00000618700 NTAN1Q96AB6 310 aa20.45■□□□□ 0.86
UPF3A-211ENST00000618700 TKTL2Q9H0I9 626 aa20.45■□□□□ 0.86
UPF3A-211ENST00000618700 LINC00597Q9H2U6 94 aa20.45■□□□□ 0.86
UPF3A-211ENST00000618700 WDCPQ9H6R7 721 aa20.45■□□□□ 0.86
UPF3A-211ENST00000618700 HPS4Q9NQG7 708 aa20.45■□□□□ 0.86
UPF3A-211ENST00000618700 XPO7Q9UIA9 1087 aaKnown RBP20.45■□□□□ 0.86
UPF3A-211ENST00000618700 DUSP12Q9UNI6 340 aa20.45■□□□□ 0.86
UPF3A-211ENST00000618700 SORCS3Q9UPU3 1222 aa20.45■□□□□ 0.86
UPF3A-211ENST00000618700 DUSP10Q9Y6W6 482 aa20.45■□□□□ 0.86
UPF3A-211ENST00000618700 MYO10Q9HD67 2058 aa20.45■□□□□ 0.86
UPF3A-211ENST00000618700 RNF8O76064 485 aa20.44■□□□□ 0.86
UPF3A-211ENST00000618700 MOCS2O96007 188 aaPredicted RBP20.44■□□□□ 0.86
UPF3A-211ENST00000618700 SRFP11831 508 aa20.44■□□□□ 0.86
UPF3A-211ENST00000618700 PCK1P35558 622 aa20.44■□□□□ 0.86
UPF3A-211ENST00000618700 ARHGAP25P42331 645 aa20.44■□□□□ 0.86
UPF3A-211ENST00000618700 KIF5AQ12840 1032 aa20.44■□□□□ 0.86
UPF3A-211ENST00000618700 FAM133BQ5BKY9 247 aaKnown RBP20.44■□□□□ 0.86
UPF3A-211ENST00000618700 NADSYN1Q6IA69 706 aa20.44■□□□□ 0.86
UPF3A-211ENST00000618700 ZNF662Q6ZS27 426 aa20.44■□□□□ 0.86
UPF3A-211ENST00000618700 CYP4V2Q6ZWL3 525 aaPredicted RBP20.44■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms