RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 CBFA2T2O43439 604 aa14.03□□□□□ -0.16
LINC00540-202ENST00000616974 ADCY5O95622 1261 aa14.03□□□□□ -0.16
LINC00540-202ENST00000616974 TYRP14679 529 aa14.03□□□□□ -0.16
LINC00540-202ENST00000616974 EIF4A3P38919 411 aaKnown RBP14.03□□□□□ -0.16
LINC00540-202ENST00000616974 MATKP42679 507 aa14.03□□□□□ -0.16
LINC00540-202ENST00000616974 PRKCQQ04759 706 aa14.03□□□□□ -0.16
LINC00540-202ENST00000616974 PIK3R6Q5UE93 754 aa14.03□□□□□ -0.16
LINC00540-202ENST00000616974 FYB2Q5VWT5 728 aa14.03□□□□□ -0.16
LINC00540-202ENST00000616974 ACAD10Q6JQN1 1059 aa14.03□□□□□ -0.16
LINC00540-202ENST00000616974 CPNE8Q86YQ8 564 aa14.03□□□□□ -0.16
LINC00540-202ENST00000616974 ETFBKMTQ8IXQ9 262 aa14.03□□□□□ -0.16
LINC00540-202ENST00000616974 CFAP52Q8N1V2 620 aa14.03□□□□□ -0.16
LINC00540-202ENST00000616974 PHTF2Q8N3S3 785 aa14.03□□□□□ -0.16
LINC00540-202ENST00000616974 TC2NQ8N9U0 490 aa14.03□□□□□ -0.16
LINC00540-202ENST00000616974 ZNF397Q8NF99 534 aaPredicted RBP14.03□□□□□ -0.16
LINC00540-202ENST00000616974 GOLGA1Q92805 767 aa14.03□□□□□ -0.16
LINC00540-202ENST00000616974 DNAJC7Q99615 494 aa14.03□□□□□ -0.16
LINC00540-202ENST00000616974 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP14.03□□□□□ -0.16
LINC00540-202ENST00000616974 NUP58Q9BVL2 599 aa14.03□□□□□ -0.16
LINC00540-202ENST00000616974 BBS2Q9BXC9 721 aa14.03□□□□□ -0.16
LINC00540-202ENST00000616974 EDEM3Q9BZQ6 932 aa14.03□□□□□ -0.16
LINC00540-202ENST00000616974 OLA1Q9NTK5 396 aaKnown RBP14.03□□□□□ -0.16
LINC00540-202ENST00000616974 ABHD10Q9NUJ1 306 aa14.03□□□□□ -0.16
LINC00540-202ENST00000616974 FANCMQ8IYD8 2048 aa14.02□□□□□ -0.16
LINC00540-202ENST00000616974 GFRA2O00451 464 aa14.02□□□□□ -0.16
LINC00540-202ENST00000616974 TULP3O75386 442 aa14.02□□□□□ -0.16
LINC00540-202ENST00000616974 NFATC1O95644 943 aa14.02□□□□□ -0.16
LINC00540-202ENST00000616974 FTLP02792 175 aaPredicted RBP14.02□□□□□ -0.16
LINC00540-202ENST00000616974 ABCB4P21439 1286 aa14.02□□□□□ -0.16
LINC00540-202ENST00000616974 SULT1E1P49888 294 aa14.02□□□□□ -0.16
LINC00540-202ENST00000616974 SEC13P55735 322 aa14.02□□□□□ -0.16
LINC00540-202ENST00000616974 RPS24P62847 133 aaKnown RBP14.02□□□□□ -0.16
LINC00540-202ENST00000616974 ZNF252P-AS1Q0IIN9 211 aa14.02□□□□□ -0.16
LINC00540-202ENST00000616974 CCDC14Q49A88 953 aa14.02□□□□□ -0.16
LINC00540-202ENST00000616974 EFHC1Q5JVL4 640 aa14.02□□□□□ -0.16
LINC00540-202ENST00000616974 TSSK4Q6SA08 328 aa14.02□□□□□ -0.16
LINC00540-202ENST00000616974 DDX42Q86XP3 938 aaKnown RBP eCLIP14.02□□□□□ -0.16
LINC00540-202ENST00000616974 CPA6Q8N4T0 437 aa14.02□□□□□ -0.16
LINC00540-202ENST00000616974 RXFP2Q8WXD0 754 aa14.02□□□□□ -0.16
LINC00540-202ENST00000616974 NT5C3BQ969T7 300 aa14.02□□□□□ -0.16
LINC00540-202ENST00000616974 MCEEQ96PE7 176 aa14.02□□□□□ -0.16
LINC00540-202ENST00000616974 LMAN1LQ9HAT1 526 aa14.02□□□□□ -0.16
LINC00540-202ENST00000616974 SPTLC3Q9NUV7 552 aa14.02□□□□□ -0.16
LINC00540-202ENST00000616974 TFR2Q9UP52 801 aa14.02□□□□□ -0.16
LINC00540-202ENST00000616974 TLR6Q9Y2C9 796 aa14.02□□□□□ -0.16
LINC00540-202ENST00000616974 HBS1LQ9Y450 684 aaKnown RBP14.02□□□□□ -0.16
LINC00540-202ENST00000616974 CHRM1P11229 460 aaPredicted RBP14.02□□□□□ -0.17
LINC00540-202ENST00000616974 MTAPQ13126 283 aa14.02□□□□□ -0.17
LINC00540-202ENST00000616974 TMEM196Q5HYL7 178 aa14.02□□□□□ -0.17
LINC00540-202ENST00000616974 PPP1R15BQ5SWA1 713 aa14.02□□□□□ -0.17
LINC00540-202ENST00000616974 C14orf80Q86SX3 495 aa14.02□□□□□ -0.17
LINC00540-202ENST00000616974 TADA2BQ86TJ2 420 aa14.02□□□□□ -0.17
LINC00540-202ENST00000616974 RALGPS2Q86X27 583 aaPredicted RBP14.02□□□□□ -0.17
LINC00540-202ENST00000616974 FAM131BQ86XD5 332 aa14.02□□□□□ -0.17
LINC00540-202ENST00000616974 PLD4Q96BZ4 506 aa14.02□□□□□ -0.17
LINC00540-202ENST00000616974 ARHGEF26Q96DR7 871 aa14.02□□□□□ -0.17
LINC00540-202ENST00000616974 SERPINB11Q96P15 392 aa14.02□□□□□ -0.17
LINC00540-202ENST00000616974 CDK5RAP1Q96SZ6 601 aaKnown RBP14.02□□□□□ -0.17
LINC00540-202ENST00000616974 LSM7Q9UK45 103 aaKnown RBP14.02□□□□□ -0.17
LINC00540-202ENST00000616974 C2CD4BA6NLJ0 364 aa14.01□□□□□ -0.17
LINC00540-202ENST00000616974 PRRT4C9JH25 899 aa14.01□□□□□ -0.17
LINC00540-202ENST00000616974 K7EQS6 105 aa14.01□□□□□ -0.17
LINC00540-202ENST00000616974 SART1O43290 800 aaKnown RBP14.01□□□□□ -0.17
LINC00540-202ENST00000616974 HOXD9P28356 352 aaPredicted RBP14.01□□□□□ -0.17
LINC00540-202ENST00000616974 NOS2P35228 1153 aa14.01□□□□□ -0.17
LINC00540-202ENST00000616974 ASTE1Q2TB18 679 aaPredicted RBP14.01□□□□□ -0.17
LINC00540-202ENST00000616974 RAP1GAP2Q684P5 730 aa14.01□□□□□ -0.17
LINC00540-202ENST00000616974 TRIM72Q6ZMU5 477 aa14.01□□□□□ -0.17
LINC00540-202ENST00000616974 BNIPLQ7Z465 357 aa14.01□□□□□ -0.17
LINC00540-202ENST00000616974 MAML2Q8IZL2 1156 aaPredicted RBP14.01□□□□□ -0.17
LINC00540-202ENST00000616974 BTBD6Q96KE9 485 aa14.01□□□□□ -0.17
LINC00540-202ENST00000616974 P2RY13Q9BPV8 354 aa14.01□□□□□ -0.17
LINC00540-202ENST00000616974 ASNSD1Q9NWL6 643 aa14.01□□□□□ -0.17
LINC00540-202ENST00000616974 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP14.01□□□□□ -0.17
LINC00540-202ENST00000616974 NENFQ9UMX5 172 aa14.01□□□□□ -0.17
LINC00540-202ENST00000616974 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP14.01□□□□□ -0.17
LINC00540-202ENST00000616974 KCNU1A8MYU2 1149 aa14□□□□□ -0.17
LINC00540-202ENST00000616974 RNF40O75150 1001 aa14□□□□□ -0.17
LINC00540-202ENST00000616974 SERPING1P05155 500 aa14□□□□□ -0.17
LINC00540-202ENST00000616974 TPM3P06753 285 aa14□□□□□ -0.17
LINC00540-202ENST00000616974 GLI1P08151 1106 aa14□□□□□ -0.17
LINC00540-202ENST00000616974 HNRNPH3P31942 346 aaKnown RBP14□□□□□ -0.17
LINC00540-202ENST00000616974 HARS2P49590 506 aaKnown RBP14□□□□□ -0.17
LINC00540-202ENST00000616974 SUGP1Q8IWZ8 645 aaKnown RBP14□□□□□ -0.17
LINC00540-202ENST00000616974 FAM217AQ8IXS0 508 aa14□□□□□ -0.17
LINC00540-202ENST00000616974 SPC24Q8NBT2 197 aa14□□□□□ -0.17
LINC00540-202ENST00000616974 PRSS33Q8NF86 280 aa14□□□□□ -0.17
LINC00540-202ENST00000616974 THAP2Q9H0W7 228 aa14□□□□□ -0.17
LINC00540-202ENST00000616974 C8orf33Q9H7E9 229 aaPredicted RBP14□□□□□ -0.17
LINC00540-202ENST00000616974 TBC1D14Q9P2M4 693 aa14□□□□□ -0.17
LINC00540-202ENST00000616974 MYO1AQ9UBC5 1043 aa14□□□□□ -0.17
LINC00540-202ENST00000616974 CHD5Q8TDI0 1954 aa14□□□□□ -0.17
LINC00540-202ENST00000616974 ACSL4O60488 711 aa14□□□□□ -0.17
LINC00540-202ENST00000616974 KRT3P12035 628 aa14□□□□□ -0.17
LINC00540-202ENST00000616974 HNRNPLP14866 589 aaKnown RBP eCLIP14□□□□□ -0.17
LINC00540-202ENST00000616974 TCF4P15884 667 aa14□□□□□ -0.17
LINC00540-202ENST00000616974 PDGFRAP16234 1089 aa14□□□□□ -0.17
LINC00540-202ENST00000616974 CDK17Q00537 523 aa14□□□□□ -0.17
LINC00540-202ENST00000616974 C1QBPQ07021 282 aaKnown RBP14□□□□□ -0.17
LINC00540-202ENST00000616974 MAMLD1Q13495 774 aa14□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms