RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 CSPG5O95196 566 aa14.78□□□□□ -0.04
USP39-220ENST00000613444 IGLV3-27P01718 113 aa14.78□□□□□ -0.04
USP39-220ENST00000613444 MYBL2P10244 700 aa14.78□□□□□ -0.04
USP39-220ENST00000613444 KLRC2P26717 231 aa14.78□□□□□ -0.04
USP39-220ENST00000613444 TNFRSF8P28908 595 aa14.78□□□□□ -0.04
USP39-220ENST00000613444 CCR1P32246 355 aa14.78□□□□□ -0.04
USP39-220ENST00000613444 CLCN4P51793 760 aa14.78□□□□□ -0.04
USP39-220ENST00000613444 EPHB3P54753 998 aa14.78□□□□□ -0.04
USP39-220ENST00000613444 EFEMP1Q12805 493 aa14.78□□□□□ -0.04
USP39-220ENST00000613444 BYSLQ13895 437 aaKnown RBP14.78□□□□□ -0.04
USP39-220ENST00000613444 DPYSQ14117 519 aa14.78□□□□□ -0.04
USP39-220ENST00000613444 VEPH1Q14D04 833 aa14.78□□□□□ -0.04
USP39-220ENST00000613444 CCDC105Q8IYK2 499 aa14.78□□□□□ -0.04
USP39-220ENST00000613444 TTC13Q8NBP0 860 aa14.78□□□□□ -0.04
USP39-220ENST00000613444 ATL2Q8NHH9 583 aa14.78□□□□□ -0.04
USP39-220ENST00000613444 CASKIN2Q8WXE0 1202 aa14.78□□□□□ -0.04
USP39-220ENST00000613444 SAMD11Q96NU1 681 aa14.78□□□□□ -0.04
USP39-220ENST00000613444 PBX4Q9BYU1 374 aa14.78□□□□□ -0.04
USP39-220ENST00000613444 OSBPL2Q9H1P3 480 aa14.78□□□□□ -0.04
USP39-220ENST00000613444 IL21Q9HBE4 155 aa14.78□□□□□ -0.04
USP39-220ENST00000613444 ZNF334Q9HCZ1 680 aaPredicted RBP14.78□□□□□ -0.04
USP39-220ENST00000613444 ARHGEF4Q9NR80 690 aa14.78□□□□□ -0.04
USP39-220ENST00000613444 ETNK2Q9NVF9 386 aa14.78□□□□□ -0.04
USP39-220ENST00000613444 NEU3Q9UQ49 428 aa14.78□□□□□ -0.04
USP39-220ENST00000613444 APOL1O14791 398 aa14.77□□□□□ -0.04
USP39-220ENST00000613444 AMPD1P23109 780 aa14.77□□□□□ -0.04
USP39-220ENST00000613444 VCPP55072 806 aaKnown RBP14.77□□□□□ -0.04
USP39-220ENST00000613444 PLD1Q13393 1074 aa14.77□□□□□ -0.04
USP39-220ENST00000613444 NOMO1Q15155 1222 aa14.77□□□□□ -0.04
USP39-220ENST00000613444 C10orf120Q5SQS8 335 aa14.77□□□□□ -0.04
USP39-220ENST00000613444 DUPD1Q68J44 220 aa14.77□□□□□ -0.04
USP39-220ENST00000613444 CCNI2Q6ZMN8 369 aaPredicted RBP14.77□□□□□ -0.04
USP39-220ENST00000613444 KREMEN2Q8NCW0 462 aa14.77□□□□□ -0.04
USP39-220ENST00000613444 ZNF512Q96ME7 567 aaPredicted RBP14.77□□□□□ -0.04
USP39-220ENST00000613444 HAPLN3Q96S86 360 aa14.77□□□□□ -0.04
USP39-220ENST00000613444 FRMD8P1Q9BZ68 369 aaPredicted RBP14.77□□□□□ -0.04
USP39-220ENST00000613444 TMEM51Q9NW97 253 aa14.77□□□□□ -0.04
USP39-220ENST00000613444 MARCH2Q9P0N8 246 aa14.77□□□□□ -0.04
USP39-220ENST00000613444 XPO7Q9UIA9 1087 aaKnown RBP14.77□□□□□ -0.04
USP39-220ENST00000613444 DRG1Q9Y295 367 aaKnown RBP14.77□□□□□ -0.04
USP39-220ENST00000613444 MFHAS1Q9Y4C4 1052 aa14.77□□□□□ -0.04
USP39-220ENST00000613444 NOTCH4Q99466 2003 aa14.77□□□□□ -0.04
USP39-220ENST00000613444 CCDC151A5D8V7 595 aa14.77□□□□□ -0.05
USP39-220ENST00000613444 H3BNC9 293 aa14.77□□□□□ -0.05
USP39-220ENST00000613444 PAGE1O75459 146 aa14.77□□□□□ -0.05
USP39-220ENST00000613444 GLUD1P00367 558 aa14.77□□□□□ -0.05
USP39-220ENST00000613444 TGM2P21980 687 aa14.77□□□□□ -0.05
USP39-220ENST00000613444 ARL4AP40617 200 aa14.77□□□□□ -0.05
USP39-220ENST00000613444 HCAR3P49019 387 aa14.77□□□□□ -0.05
USP39-220ENST00000613444 CLCN6P51797 869 aa14.77□□□□□ -0.05
USP39-220ENST00000613444 BRD3Q15059 726 aa14.77□□□□□ -0.05
USP39-220ENST00000613444 TRIP4Q15650 581 aaPredicted RBP14.77□□□□□ -0.05
USP39-220ENST00000613444 NCBP2-AS2Q69YL0 99 aa14.77□□□□□ -0.05
USP39-220ENST00000613444 RFX8Q6ZV50 586 aa14.77□□□□□ -0.05
USP39-220ENST00000613444 RNF34Q969K3 372 aa14.77□□□□□ -0.05
USP39-220ENST00000613444 ERP44Q9BS26 406 aa14.77□□□□□ -0.05
USP39-220ENST00000613444 LRRC3Q9BY71 257 aa14.77□□□□□ -0.05
USP39-220ENST00000613444 OR12D3Q9UGF7 316 aa14.77□□□□□ -0.05
USP39-220ENST00000613444 MYO9BQ13459 2157 aa14.77□□□□□ -0.05
USP39-220ENST00000613444 H3BRJ5 948 aa14.76□□□□□ -0.05
USP39-220ENST00000613444 DCLK1O15075 740 aa14.76□□□□□ -0.05
USP39-220ENST00000613444 CREB3O43889 395 aa14.76□□□□□ -0.05
USP39-220ENST00000613444 ECEL1O95672 775 aa14.76□□□□□ -0.05
USP39-220ENST00000613444 F11P03951 625 aa14.76□□□□□ -0.05
USP39-220ENST00000613444 ITGAVP06756 1048 aa14.76□□□□□ -0.05
USP39-220ENST00000613444 C8AP07357 584 aa14.76□□□□□ -0.05
USP39-220ENST00000613444 GGCXP38435 758 aa14.76□□□□□ -0.05
USP39-220ENST00000613444 CARSP49589 748 aaKnown RBP14.76□□□□□ -0.05
USP39-220ENST00000613444 TUBP50607 506 aa14.76□□□□□ -0.05
USP39-220ENST00000613444 TBX4P57082 545 aa14.76□□□□□ -0.05
USP39-220ENST00000613444 SLC10A2Q12908 348 aaPredicted RBP14.76□□□□□ -0.05
USP39-220ENST00000613444 MANEALQ5VSG8 457 aa14.76□□□□□ -0.05
USP39-220ENST00000613444 KLHDC10Q6PID8 442 aa14.76□□□□□ -0.05
USP39-220ENST00000613444 IFT20Q8IY31 132 aa14.76□□□□□ -0.05
USP39-220ENST00000613444 TRAF3IP1Q8TDR0 691 aaPredicted RBP14.76□□□□□ -0.05
USP39-220ENST00000613444 ASB3Q9Y575 518 aa14.76□□□□□ -0.05
USP39-220ENST00000613444 EEF2KO00418 725 aaKnown RBP14.75□□□□□ -0.05
USP39-220ENST00000613444 LRIG2O94898 1065 aa14.75□□□□□ -0.05
USP39-220ENST00000613444 C1RP00736 705 aa14.75□□□□□ -0.05
USP39-220ENST00000613444 OAS1P00973 400 aaKnown RBP14.75□□□□□ -0.05
USP39-220ENST00000613444 ECHS1P30084 290 aa14.75□□□□□ -0.05
USP39-220ENST00000613444 GBE1Q04446 702 aa14.75□□□□□ -0.05
USP39-220ENST00000613444 GPM6BQ13491 265 aa14.75□□□□□ -0.05
USP39-220ENST00000613444 C1orf228Q6PIY5 440 aa14.75□□□□□ -0.05
USP39-220ENST00000613444 CCDC149Q6ZUS6 474 aa14.75□□□□□ -0.05
USP39-220ENST00000613444 ITIH5Q86UX2 942 aa14.75□□□□□ -0.05
USP39-220ENST00000613444 DDX42Q86XP3 938 aaKnown RBP eCLIP14.75□□□□□ -0.05
USP39-220ENST00000613444 MIB1Q86YT6 1006 aa14.75□□□□□ -0.05
USP39-220ENST00000613444 TMC8Q8IU68 726 aa14.75□□□□□ -0.05
USP39-220ENST00000613444 ALLCQ8N6M5 410 aa14.75□□□□□ -0.05
USP39-220ENST00000613444 P3H4Q92791 437 aa14.75□□□□□ -0.05
USP39-220ENST00000613444 PRDM16Q9HAZ2 1276 aa14.75□□□□□ -0.05
USP39-220ENST00000613444 TRPM5Q9NZQ8 1165 aa14.75□□□□□ -0.05
USP39-220ENST00000613444 RASAL2Q9UJF2 1139 aa14.75□□□□□ -0.05
USP39-220ENST00000613444 REV3LO60673 3130 aa14.75□□□□□ -0.05
USP39-220ENST00000613444 HSFX4A0A1B0GTS1 333 aaPredicted RBP14.75□□□□□ -0.05
USP39-220ENST00000613444 HSFX3A0A1B0GWH4 333 aaPredicted RBP14.75□□□□□ -0.05
USP39-220ENST00000613444 COCHO43405 550 aa14.75□□□□□ -0.05
USP39-220ENST00000613444 CLASP2O75122 1294 aaKnown RBP14.75□□□□□ -0.05
USP39-220ENST00000613444 MCM3P25205 808 aa14.75□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms