RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-223ENST00000600552 NCAM1P13591 858 aa18.36■□□□□ 0.53
SHKBP1-223ENST00000600552 GNSP15586 552 aa18.36■□□□□ 0.53
SHKBP1-223ENST00000600552 FNDC3BQ53EP0 1204 aaKnown RBP18.36■□□□□ 0.53
SHKBP1-223ENST00000600552 MPPE1Q53F39 396 aa18.36■□□□□ 0.53
SHKBP1-223ENST00000600552 PEAR1Q5VY43 1037 aaPredicted RBP18.36■□□□□ 0.53
SHKBP1-223ENST00000600552 CPXM2Q8N436 756 aa18.36■□□□□ 0.53
SHKBP1-223ENST00000600552 TFAP2BQ92481 460 aa18.36■□□□□ 0.53
SHKBP1-223ENST00000600552 PRCCQ92733 491 aaPredicted RBP18.36■□□□□ 0.53
SHKBP1-223ENST00000600552 FOXJ1Q92949 421 aa18.36■□□□□ 0.53
SHKBP1-223ENST00000600552 SLC35C1Q96A29 364 aa18.36■□□□□ 0.53
SHKBP1-223ENST00000600552 TMA16Q96EY4 203 aaKnown RBP18.36■□□□□ 0.53
SHKBP1-223ENST00000600552 ZNF419Q96HQ0 510 aaPredicted RBP18.36■□□□□ 0.53
SHKBP1-223ENST00000600552 HOOK1Q9UJC3 728 aaKnown RBP18.36■□□□□ 0.53
SHKBP1-223ENST00000600552 RALYQ9UKM9 306 aaKnown RBP18.36■□□□□ 0.53
SHKBP1-223ENST00000600552 USP24Q9UPU5 2620 aa18.36■□□□□ 0.53
SHKBP1-223ENST00000600552 COQ4Q9Y3A0 265 aa18.36■□□□□ 0.53
SHKBP1-223ENST00000600552 KCNJ18B7U540 433 aa18.35■□□□□ 0.53
SHKBP1-223ENST00000600552 PSMA7O14818 248 aa18.35■□□□□ 0.53
SHKBP1-223ENST00000600552 TBXAS1P24557 533 aaPredicted RBP18.35■□□□□ 0.53
SHKBP1-223ENST00000600552 FMO5P49326 533 aa18.35■□□□□ 0.53
SHKBP1-223ENST00000600552 MCCD1P59942 119 aaPredicted RBP18.35■□□□□ 0.53
SHKBP1-223ENST00000600552 FAM193AP78312 1265 aa18.35■□□□□ 0.53
SHKBP1-223ENST00000600552 SEMA3BQ13214 749 aa18.35■□□□□ 0.53
SHKBP1-223ENST00000600552 TRIP4Q15650 581 aaPredicted RBP18.35■□□□□ 0.53
SHKBP1-223ENST00000600552 TMEM215Q68D42 235 aa18.35■□□□□ 0.53
SHKBP1-223ENST00000600552 BHLHA9Q7RTU4 235 aa18.35■□□□□ 0.53
SHKBP1-223ENST00000600552 PPM1KQ8N3J5 372 aa18.35■□□□□ 0.53
SHKBP1-223ENST00000600552 ZCCHC9Q8N567 271 aaKnown RBP18.35■□□□□ 0.53
SHKBP1-223ENST00000600552 SNX19Q92543 992 aa18.35■□□□□ 0.53
SHKBP1-223ENST00000600552 KAT5Q92993 513 aa18.35■□□□□ 0.53
SHKBP1-223ENST00000600552 CAMK1GQ96NX5 476 aa18.35■□□□□ 0.53
SHKBP1-223ENST00000600552 NT5C1BQ96P26 610 aa18.35■□□□□ 0.53
SHKBP1-223ENST00000600552 ADAM33Q9BZ11 813 aa18.35■□□□□ 0.53
SHKBP1-223ENST00000600552 FAM124BQ9H5Z6 455 aaPredicted RBP18.35■□□□□ 0.53
SHKBP1-223ENST00000600552 ITM2CQ9NQX7 267 aa18.35■□□□□ 0.53
SHKBP1-223ENST00000600552 WSB2Q9NYS7 404 aaPredicted RBP18.35■□□□□ 0.53
SHKBP1-223ENST00000600552 STIM2Q9P246 746 aa18.35■□□□□ 0.53
SHKBP1-223ENST00000600552 GOLGA6L7A0A1B0GV03 622 aa18.34■□□□□ 0.53
SHKBP1-223ENST00000600552 M0QYV0 167 aa18.34■□□□□ 0.53
SHKBP1-223ENST00000600552 O00370 1275 aa18.34■□□□□ 0.53
SHKBP1-223ENST00000600552 NPC1O15118 1278 aa18.34■□□□□ 0.53
SHKBP1-223ENST00000600552 SETSIPP0DME0 302 aa18.34■□□□□ 0.53
SHKBP1-223ENST00000600552 BRD2P25440 801 aaKnown RBP18.34■□□□□ 0.53
SHKBP1-223ENST00000600552 TPMTP51580 245 aa18.34■□□□□ 0.53
SHKBP1-223ENST00000600552 LRRC63Q05C16 580 aa18.34■□□□□ 0.53
SHKBP1-223ENST00000600552 DCAF12L1Q5VU92 463 aa18.34■□□□□ 0.53
SHKBP1-223ENST00000600552 RFWD3Q6PCD5 774 aa18.34■□□□□ 0.53
SHKBP1-223ENST00000600552 CHST9Q7L1S5 443 aa18.34■□□□□ 0.53
SHKBP1-223ENST00000600552 RRAGAQ7L523 313 aa18.34■□□□□ 0.53
SHKBP1-223ENST00000600552 PIP4P1Q86T03 277 aa18.34■□□□□ 0.53
SHKBP1-223ENST00000600552 ENGASEQ8NFI3 743 aa18.34■□□□□ 0.53
SHKBP1-223ENST00000600552 SLC2A11Q9BYW1 496 aa18.34■□□□□ 0.53
SHKBP1-223ENST00000600552 MIS12Q9H081 205 aa18.34■□□□□ 0.53
SHKBP1-223ENST00000600552 METTL14Q9HCE5 456 aaKnown RBP18.34■□□□□ 0.53
SHKBP1-223ENST00000600552 ABCC13Q9NSE7 274 aa18.34■□□□□ 0.53
SHKBP1-223ENST00000600552 ABCB8Q9NUT2 735 aa18.34■□□□□ 0.53
SHKBP1-223ENST00000600552 SUSD2Q9UGT4 822 aa18.34■□□□□ 0.53
SHKBP1-223ENST00000600552 KIAA1257Q9ULG3 409 aa18.34■□□□□ 0.53
SHKBP1-223ENST00000600552 PLA2G4CQ9UP65 541 aa18.34■□□□□ 0.53
SHKBP1-223ENST00000600552 HBS1LQ9Y450 684 aaKnown RBP18.34■□□□□ 0.53
SHKBP1-223ENST00000600552 PCDHB9Q9Y5E1 797 aa18.34■□□□□ 0.53
SHKBP1-223ENST00000600552 RNF225M0QZC1 329 aaPredicted RBP18.33■□□□□ 0.52
SHKBP1-223ENST00000600552 BIN1O00499 593 aa18.33■□□□□ 0.52
SHKBP1-223ENST00000600552 TIMM44O43615 452 aa18.33■□□□□ 0.52
SHKBP1-223ENST00000600552 SH3BP5O60239 455 aa18.33■□□□□ 0.52
SHKBP1-223ENST00000600552 TBL1XO60907 577 aa18.33■□□□□ 0.52
SHKBP1-223ENST00000600552 CD44P16070 742 aaKnown RBP18.33■□□□□ 0.52
SHKBP1-223ENST00000600552 HOXD9P28356 352 aaPredicted RBP18.33■□□□□ 0.52
SHKBP1-223ENST00000600552 SGSHP51688 502 aa18.33■□□□□ 0.52
SHKBP1-223ENST00000600552 DAOAP59103 153 aa18.33■□□□□ 0.52
SHKBP1-223ENST00000600552 BECN1Q14457 450 aa18.33■□□□□ 0.52
SHKBP1-223ENST00000600552 PMF1Q6P1K2 205 aa18.33■□□□□ 0.52
SHKBP1-223ENST00000600552 ZC3H3Q8IXZ2 948 aaKnown RBP18.33■□□□□ 0.52
SHKBP1-223ENST00000600552 CLEC4CQ8WTT0 213 aa18.33■□□□□ 0.52
SHKBP1-223ENST00000600552 GOLGA1Q92805 767 aa18.33■□□□□ 0.52
SHKBP1-223ENST00000600552 MAN1B1Q9UKM7 699 aa18.33■□□□□ 0.52
SHKBP1-223ENST00000600552 ZMIZ1Q9ULJ6 1067 aa18.33■□□□□ 0.52
SHKBP1-223ENST00000600552 PCDH15Q96QU1 1955 aa18.32■□□□□ 0.52
SHKBP1-223ENST00000600552 CD59P13987 128 aa18.32■□□□□ 0.52
SHKBP1-223ENST00000600552 HLA-FP30511 346 aa18.32■□□□□ 0.52
SHKBP1-223ENST00000600552 OXTRP30559 389 aa18.32■□□□□ 0.52
SHKBP1-223ENST00000600552 RDXP35241 583 aaKnown RBP18.32■□□□□ 0.52
SHKBP1-223ENST00000600552 STX17P56962 302 aa18.32■□□□□ 0.52
SHKBP1-223ENST00000600552 EIF4HQ15056 248 aaKnown RBP18.32■□□□□ 0.52
SHKBP1-223ENST00000600552 E2F5Q15329 346 aa18.32■□□□□ 0.52
SHKBP1-223ENST00000600552 COBLL1Q53SF7 1204 aa18.32■□□□□ 0.52
SHKBP1-223ENST00000600552 ADGRF1Q5T601 910 aa18.32■□□□□ 0.52
SHKBP1-223ENST00000600552 LCLAT1Q6UWP7 414 aa18.32■□□□□ 0.52
SHKBP1-223ENST00000600552 CHCHD4Q8N4Q1 142 aa18.32■□□□□ 0.52
SHKBP1-223ENST00000600552 UBR7Q8N806 425 aa18.32■□□□□ 0.52
SHKBP1-223ENST00000600552 RBBP8NLQ8NC74 664 aaPredicted RBP18.32■□□□□ 0.52
SHKBP1-223ENST00000600552 NELFBQ8WX92 580 aa18.32■□□□□ 0.52
SHKBP1-223ENST00000600552 KCTD13Q8WZ19 329 aa18.32■□□□□ 0.52
SHKBP1-223ENST00000600552 DHTKD1Q96HY7 919 aaPredicted RBP18.32■□□□□ 0.52
SHKBP1-223ENST00000600552 NUP58Q9BVL2 599 aa18.32■□□□□ 0.52
SHKBP1-223ENST00000600552 CNGB3Q9NQW8 809 aa18.32■□□□□ 0.52
SHKBP1-223ENST00000600552 USP36Q9P275 1121 aaKnown RBP18.32■□□□□ 0.52
SHKBP1-223ENST00000600552 EIF2B4Q9UI10 523 aaKnown RBP18.32■□□□□ 0.52
SHKBP1-223ENST00000600552 GGA2Q9UJY4 613 aa18.32■□□□□ 0.52
SHKBP1-223ENST00000600552 KLK13Q9UKR3 277 aa18.32■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 121 ms