RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 STAU1O95793 577 aaKnown RBP20.97■□□□□ 0.95
UPF1-207ENST00000599848 PWP2Q15269 919 aaKnown RBP20.97■□□□□ 0.95
UPF1-207ENST00000599848 INSCQ1MX18 579 aa20.97■□□□□ 0.95
UPF1-207ENST00000599848 SHROOM1Q2M3G4 852 aaPredicted RBP20.97■□□□□ 0.95
UPF1-207ENST00000599848 RBM43Q6ZSC3 357 aaKnown RBP20.97■□□□□ 0.95
UPF1-207ENST00000599848 ZFP28Q8NHY6 868 aa20.97■□□□□ 0.95
UPF1-207ENST00000599848 POLR1EQ9GZS1 481 aaKnown RBP20.97■□□□□ 0.95
UPF1-207ENST00000599848 ALBP02768 609 aa20.97■□□□□ 0.95
UPF1-207ENST00000599848 NUP62P37198 522 aaPredicted RBP20.97■□□□□ 0.95
UPF1-207ENST00000599848 RFX5P48382 616 aaPredicted RBP20.97■□□□□ 0.95
UPF1-207ENST00000599848 CD151P48509 253 aa20.97■□□□□ 0.95
UPF1-207ENST00000599848 LRRC14Q15048 493 aa20.97■□□□□ 0.95
UPF1-207ENST00000599848 DACT2Q5SW24 774 aa20.97■□□□□ 0.95
UPF1-207ENST00000599848 CATSPERGQ6ZRH7 1159 aa20.97■□□□□ 0.95
UPF1-207ENST00000599848 NT5DC3Q86UY8 548 aa20.97■□□□□ 0.95
UPF1-207ENST00000599848 RIPOR3Q96MK2 946 aa20.97■□□□□ 0.95
UPF1-207ENST00000599848 CDH9Q9ULB4 789 aa20.97■□□□□ 0.95
UPF1-207ENST00000599848 RUVBL2Q9Y230 463 aaKnown RBP20.97■□□□□ 0.95
UPF1-207ENST00000599848 PCDHGA4Q9Y5G9 962 aa20.97■□□□□ 0.95
UPF1-207ENST00000599848 CEMIPQ8WUJ3 1361 aa20.97■□□□□ 0.95
UPF1-207ENST00000599848 NTSP30990 170 aa20.97■□□□□ 0.95
UPF1-207ENST00000599848 MGAT5Q09328 741 aa20.97■□□□□ 0.95
UPF1-207ENST00000599848 TMED1Q13445 227 aa20.97■□□□□ 0.95
UPF1-207ENST00000599848 NAB1Q13506 487 aa20.97■□□□□ 0.95
UPF1-207ENST00000599848 ATAT1Q5SQI0 421 aa20.97■□□□□ 0.95
UPF1-207ENST00000599848 HEXDCQ8WVB3 486 aa20.97■□□□□ 0.95
UPF1-207ENST00000599848 ANKS1AQ92625 1134 aa20.97■□□□□ 0.95
UPF1-207ENST00000599848 USE1Q9NZ43 259 aa20.97■□□□□ 0.95
UPF1-207ENST00000599848 CCDC159P0C7I6 412 aa20.96■□□□□ 0.95
UPF1-207ENST00000599848 GRB10Q13322 594 aa20.96■□□□□ 0.95
UPF1-207ENST00000599848 B3GALNT2Q8NCR0 500 aa20.96■□□□□ 0.95
UPF1-207ENST00000599848 PARVBQ9HBI1 364 aa20.96■□□□□ 0.95
UPF1-207ENST00000599848 MED24O75448 989 aa20.96■□□□□ 0.95
UPF1-207ENST00000599848 PROSCO94903 275 aa20.96■□□□□ 0.95
UPF1-207ENST00000599848 THRAP10827 490 aa20.96■□□□□ 0.95
UPF1-207ENST00000599848 ANTXR2P58335 489 aa20.96■□□□□ 0.95
UPF1-207ENST00000599848 MPP3Q13368 585 aa20.96■□□□□ 0.95
UPF1-207ENST00000599848 NEK5Q6P3R8 708 aa20.96■□□□□ 0.95
UPF1-207ENST00000599848 OSBPL1AQ9BXW6 950 aa20.96■□□□□ 0.95
UPF1-207ENST00000599848 MANSC1Q9H8J5 431 aa20.96■□□□□ 0.95
UPF1-207ENST00000599848 POPDC2Q9HBU9 364 aa20.96■□□□□ 0.95
UPF1-207ENST00000599848 GPRC5CQ9NQ84 441 aa20.96■□□□□ 0.95
UPF1-207ENST00000599848 TBC1D14Q9P2M4 693 aa20.96■□□□□ 0.95
UPF1-207ENST00000599848 ADAM30Q9UKF2 790 aa20.96■□□□□ 0.95
UPF1-207ENST00000599848 GIT1Q9Y2X7 761 aa20.96■□□□□ 0.95
UPF1-207ENST00000599848 PNMA6AP0CW24 399 aaPredicted RBP20.96■□□□□ 0.95
UPF1-207ENST00000599848 PRKAR2AP13861 404 aaKnown RBP20.96■□□□□ 0.95
UPF1-207ENST00000599848 GIT2Q14161 759 aa20.96■□□□□ 0.95
UPF1-207ENST00000599848 SLC27A6Q9Y2P4 619 aa20.96■□□□□ 0.95
UPF1-207ENST00000599848 CRABP2P29373 138 aa20.96■□□□□ 0.95
UPF1-207ENST00000599848 ALFQ53S48 1182 aa20.96■□□□□ 0.95
UPF1-207ENST00000599848 ANKRD49Q8WVL7 239 aa20.96■□□□□ 0.95
UPF1-207ENST00000599848 C19orf60Q96EN9 201 aa20.96■□□□□ 0.95
UPF1-207ENST00000599848 WDR18Q9BV38 432 aa20.96■□□□□ 0.95
UPF1-207ENST00000599848 FAIM2Q9BWQ8 316 aa20.96■□□□□ 0.95
UPF1-207ENST00000599848 FAM153AQ9UHL3 310 aa20.96■□□□□ 0.95
UPF1-207ENST00000599848 GTF2A1LQ9UNN4 478 aa20.96■□□□□ 0.95
UPF1-207ENST00000599848 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP20.95■□□□□ 0.94
UPF1-207ENST00000599848 CLK1P49759 484 aaKnown RBP20.95■□□□□ 0.94
UPF1-207ENST00000599848 ATP6AP1LQ52LC2 224 aa20.95■□□□□ 0.94
UPF1-207ENST00000599848 CELF3Q5SZQ8 465 aaKnown RBP20.95■□□□□ 0.94
UPF1-207ENST00000599848 CYP20A1Q6UW02 462 aa20.95■□□□□ 0.94
UPF1-207ENST00000599848 LRRC8DQ7L1W4 858 aa20.95■□□□□ 0.94
UPF1-207ENST00000599848 HELQQ8TDG4 1101 aa20.95■□□□□ 0.94
UPF1-207ENST00000599848 CBWD1Q9BRT8 395 aa20.95■□□□□ 0.94
UPF1-207ENST00000599848 CELF4Q9BZC1 486 aaKnown RBP20.95■□□□□ 0.94
UPF1-207ENST00000599848 IARS2Q9NSE4 1012 aaKnown RBP20.95■□□□□ 0.94
UPF1-207ENST00000599848 HPCAL1P37235 193 aa20.95■□□□□ 0.94
UPF1-207ENST00000599848 ADCYAP1R1P41586 468 aa20.95■□□□□ 0.94
UPF1-207ENST00000599848 COPZ1P61923 177 aa20.95■□□□□ 0.94
UPF1-207ENST00000599848 SRLQ86TD4 932 aa20.95■□□□□ 0.94
UPF1-207ENST00000599848 ARHGAP28Q9P2N2 729 aa20.95■□□□□ 0.94
UPF1-207ENST00000599848 TSPAN16Q9UKR8 245 aa20.95■□□□□ 0.94
UPF1-207ENST00000599848 TDRKHQ9Y2W6 561 aaKnown RBP20.95■□□□□ 0.94
UPF1-207ENST00000599848 TCP11X1B4DZS4 312 aa20.95■□□□□ 0.94
UPF1-207ENST00000599848 SLC37A4O43826 429 aa20.95■□□□□ 0.94
UPF1-207ENST00000599848 AVILO75366 819 aa20.95■□□□□ 0.94
UPF1-207ENST00000599848 CCNDBP1O95273 360 aa20.95■□□□□ 0.94
UPF1-207ENST00000599848 DNTTP04053 509 aa20.95■□□□□ 0.94
UPF1-207ENST00000599848 HDCP19113 662 aa20.95■□□□□ 0.94
UPF1-207ENST00000599848 DGKAP23743 735 aa20.95■□□□□ 0.94
UPF1-207ENST00000599848 DYNC1I2Q13409 638 aaKnown RBP20.95■□□□□ 0.94
UPF1-207ENST00000599848 MROH9Q5TGP6 573 aa20.95■□□□□ 0.94
UPF1-207ENST00000599848 BEND7Q8N7W2 519 aaPredicted RBP20.95■□□□□ 0.94
UPF1-207ENST00000599848 INTS7Q9NVH2 962 aaKnown RBP20.95■□□□□ 0.94
UPF1-207ENST00000599848 FAM205CA6NFA0 338 aa20.95■□□□□ 0.94
UPF1-207ENST00000599848 FOXN1O15353 648 aa20.95■□□□□ 0.94
UPF1-207ENST00000599848 TSPAN3O60637 253 aa20.95■□□□□ 0.94
UPF1-207ENST00000599848 NUDT14O95848 222 aa20.95■□□□□ 0.94
UPF1-207ENST00000599848 LTFP02788 710 aa20.95■□□□□ 0.94
UPF1-207ENST00000599848 PEX19P40855 299 aa20.95■□□□□ 0.94
UPF1-207ENST00000599848 ABRAQ8N0Z2 381 aa20.95■□□□□ 0.94
UPF1-207ENST00000599848 MSL3Q8N5Y2 521 aaKnown RBP20.95■□□□□ 0.94
UPF1-207ENST00000599848 CHAMP1Q96JM3 812 aa20.95■□□□□ 0.94
UPF1-207ENST00000599848 LRRC4BQ9NT99 713 aa20.95■□□□□ 0.94
UPF1-207ENST00000599848 TNPO3Q9Y5L0 923 aaKnown RBP20.95■□□□□ 0.94
UPF1-207ENST00000599848 CACNB4O00305 520 aaPredicted RBP20.94■□□□□ 0.94
UPF1-207ENST00000599848 FCGR1AP12314 374 aa20.94■□□□□ 0.94
UPF1-207ENST00000599848 RPL3P39023 403 aaKnown RBP20.94■□□□□ 0.94
UPF1-207ENST00000599848 TEAD4Q15561 434 aa20.94■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms