RNA–Protein interactions for RNA: ENST00000596549.5

LIG1-212, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-212ENST00000596549 CYBBP04839 570 aa13.6□□□□□ -0.23
LIG1-212ENST00000596549 SDHBP21912 280 aa13.6□□□□□ -0.23
LIG1-212ENST00000596549 HLA-FP30511 346 aa13.6□□□□□ -0.23
LIG1-212ENST00000596549 SLC6A4P31645 630 aa13.6□□□□□ -0.23
LIG1-212ENST00000596549 MTIF2P46199 727 aaKnown RBP13.6□□□□□ -0.23
LIG1-212ENST00000596549 HARS2P49590 506 aaKnown RBP13.6□□□□□ -0.23
LIG1-212ENST00000596549 LIMK1P53667 647 aa13.6□□□□□ -0.23
LIG1-212ENST00000596549 PDCLQ13371 301 aa13.6□□□□□ -0.23
LIG1-212ENST00000596549 EXOC3L4Q17RC7 722 aa13.6□□□□□ -0.23
LIG1-212ENST00000596549 HSP90AA4PQ58FG1 418 aa13.6□□□□□ -0.23
LIG1-212ENST00000596549 RNF43Q68DV7 783 aa13.6□□□□□ -0.23
LIG1-212ENST00000596549 NADSYN1Q6IA69 706 aa13.6□□□□□ -0.23
LIG1-212ENST00000596549 GBP6Q6ZN66 633 aa13.6□□□□□ -0.23
LIG1-212ENST00000596549 ARMCX6Q7L4S7 300 aa13.6□□□□□ -0.23
LIG1-212ENST00000596549 TAC4Q86UU9 113 aa13.6□□□□□ -0.23
LIG1-212ENST00000596549 SCUBE3Q8IX30 993 aa13.6□□□□□ -0.23
LIG1-212ENST00000596549 DDI1Q8WTU0 396 aa13.6□□□□□ -0.23
LIG1-212ENST00000596549 MYEOVQ96EZ4 313 aa13.6□□□□□ -0.23
LIG1-212ENST00000596549 FCRL2Q96LA5 508 aaPredicted RBP13.6□□□□□ -0.23
LIG1-212ENST00000596549 ST7Q9NRC1 585 aa13.6□□□□□ -0.23
LIG1-212ENST00000596549 THAP10Q9P2Z0 257 aaPredicted RBP13.6□□□□□ -0.23
LIG1-212ENST00000596549 NAALADL1Q9UQQ1 740 aa13.6□□□□□ -0.23
LIG1-212ENST00000596549 STON1Q9Y6Q2 735 aa13.6□□□□□ -0.23
LIG1-212ENST00000596549 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa13.59□□□□□ -0.23
LIG1-212ENST00000596549 IGHV1OR15-9A0A0B4J2B8 117 aa13.59□□□□□ -0.23
LIG1-212ENST00000596549 GOLGA6L7A0A1B0GV03 622 aa13.59□□□□□ -0.23
LIG1-212ENST00000596549 LNP1A1A4G5 178 aa13.59□□□□□ -0.23
LIG1-212ENST00000596549 FOXD2O60548 495 aaPredicted RBP13.59□□□□□ -0.23
LIG1-212ENST00000596549 CAVIN2O95810 425 aa13.59□□□□□ -0.23
LIG1-212ENST00000596549 NCAM1P13591 858 aa13.59□□□□□ -0.23
LIG1-212ENST00000596549 PRKCHP24723 683 aa13.59□□□□□ -0.23
LIG1-212ENST00000596549 PTGER3P43115 390 aa13.59□□□□□ -0.23
LIG1-212ENST00000596549 DHPSP49366 369 aaPredicted RBP13.59□□□□□ -0.23
LIG1-212ENST00000596549 PITX1P78337 314 aaPredicted RBP13.59□□□□□ -0.23
LIG1-212ENST00000596549 RING1Q06587 406 aa13.59□□□□□ -0.23
LIG1-212ENST00000596549 ZNF234Q14588 700 aa13.59□□□□□ -0.23
LIG1-212ENST00000596549 EIF4HQ15056 248 aaKnown RBP13.59□□□□□ -0.23
LIG1-212ENST00000596549 FUT11Q495W5 492 aa13.59□□□□□ -0.23
LIG1-212ENST00000596549 MPPE1Q53F39 396 aa13.59□□□□□ -0.23
LIG1-212ENST00000596549 ADGRF1Q5T601 910 aa13.59□□□□□ -0.23
LIG1-212ENST00000596549 SYPL2Q5VXT5 272 aa13.59□□□□□ -0.23
LIG1-212ENST00000596549 RFWD3Q6PCD5 774 aa13.59□□□□□ -0.23
LIG1-212ENST00000596549 CYP2U1Q7Z449 544 aa13.59□□□□□ -0.23
LIG1-212ENST00000596549 TMEFF1Q8IYR6 380 aa13.59□□□□□ -0.23
LIG1-212ENST00000596549 PGBD3Q8N328 593 aa13.59□□□□□ -0.23
LIG1-212ENST00000596549 ADAM32Q8TC27 787 aa13.59□□□□□ -0.23
LIG1-212ENST00000596549 GPT2Q8TD30 523 aa13.59□□□□□ -0.23
LIG1-212ENST00000596549 SORCS1Q8WY21 1168 aa13.59□□□□□ -0.23
LIG1-212ENST00000596549 FAM149B1Q96BN6 582 aa13.59□□□□□ -0.23
LIG1-212ENST00000596549 SLC39A13Q96H72 371 aa13.59□□□□□ -0.23
LIG1-212ENST00000596549 MRGPRX1Q96LB2 322 aa13.59□□□□□ -0.23
LIG1-212ENST00000596549 SERPINB11Q96P15 392 aa13.59□□□□□ -0.23
LIG1-212ENST00000596549 EDEM2Q9BV94 578 aa13.59□□□□□ -0.23
LIG1-212ENST00000596549 SLC2A11Q9BYW1 496 aa13.59□□□□□ -0.23
LIG1-212ENST00000596549 MED7O43513 233 aa13.58□□□□□ -0.24
LIG1-212ENST00000596549 ACSL4O60488 711 aa13.58□□□□□ -0.24
LIG1-212ENST00000596549 IGLV3-25P01717 112 aa13.58□□□□□ -0.24
LIG1-212ENST00000596549 ERCC5P28715 1186 aaPredicted RBP13.58□□□□□ -0.24
LIG1-212ENST00000596549 ACADSBP45954 432 aa13.58□□□□□ -0.24
LIG1-212ENST00000596549 TBX4P57082 545 aa13.58□□□□□ -0.24
LIG1-212ENST00000596549 ZNF445P59923 1031 aa13.58□□□□□ -0.24
LIG1-212ENST00000596549 KCNMA1Q12791 1236 aa13.58□□□□□ -0.24
LIG1-212ENST00000596549 TPD52L1Q16890 204 aaPredicted RBP13.58□□□□□ -0.24
LIG1-212ENST00000596549 NUGGCQ68CJ6 796 aa13.58□□□□□ -0.24
LIG1-212ENST00000596549 TMEM110Q86TL2 294 aa13.58□□□□□ -0.24
LIG1-212ENST00000596549 PASD1Q8IV76 773 aa13.58□□□□□ -0.24
LIG1-212ENST00000596549 WDTC1Q8N5D0 677 aa13.58□□□□□ -0.24
LIG1-212ENST00000596549 DDX51Q8N8A6 666 aaKnown RBP eCLIP13.58□□□□□ -0.24
LIG1-212ENST00000596549 STK32AQ8WU08 396 aa13.58□□□□□ -0.24
LIG1-212ENST00000596549 GOLGA1Q92805 767 aa13.58□□□□□ -0.24
LIG1-212ENST00000596549 FAM81BQ96LP2 452 aa13.58□□□□□ -0.24
LIG1-212ENST00000596549 CPXM1Q96SM3 734 aa13.58□□□□□ -0.24
LIG1-212ENST00000596549 NDST4Q9H3R1 872 aa13.58□□□□□ -0.24
LIG1-212ENST00000596549 SAMSN1Q9NSI8 373 aaKnown RBP13.58□□□□□ -0.24
LIG1-212ENST00000596549 TMEM74BQ9NUR3 256 aa13.58□□□□□ -0.24
LIG1-212ENST00000596549 ELOVL2Q9NXB9 296 aa13.58□□□□□ -0.24
LIG1-212ENST00000596549 XPO7Q9UIA9 1087 aaKnown RBP13.58□□□□□ -0.24
LIG1-212ENST00000596549 DNAJC12Q9UKB3 198 aa13.58□□□□□ -0.24
LIG1-212ENST00000596549 PCDHGC3Q9UN70 934 aa13.58□□□□□ -0.24
LIG1-212ENST00000596549 CYP8B1Q9UNU6 501 aa13.58□□□□□ -0.24
LIG1-212ENST00000596549 PLXNA2O75051 1894 aa13.58□□□□□ -0.24
LIG1-212ENST00000596549 PI4KAP42356 2102 aa13.57□□□□□ -0.24
LIG1-212ENST00000596549 TM4SF5O14894 197 aa13.57□□□□□ -0.24
LIG1-212ENST00000596549 IRAK2O43187 625 aa13.57□□□□□ -0.24
LIG1-212ENST00000596549 SART1O43290 800 aaKnown RBP13.57□□□□□ -0.24
LIG1-212ENST00000596549 PRKCSHP14314 528 aaPredicted RBP13.57□□□□□ -0.24
LIG1-212ENST00000596549 USP8P40818 1118 aa13.57□□□□□ -0.24
LIG1-212ENST00000596549 COPAP53621 1224 aa13.57□□□□□ -0.24
LIG1-212ENST00000596549 NNTQ13423 1086 aa13.57□□□□□ -0.24
LIG1-212ENST00000596549 EIF4EBP2Q13542 120 aaPredicted RBP13.57□□□□□ -0.24
LIG1-212ENST00000596549 TAF5Q15542 800 aa13.57□□□□□ -0.24
LIG1-212ENST00000596549 VWA3BQ502W6 1294 aa13.57□□□□□ -0.24
LIG1-212ENST00000596549 STPG1Q5TH74 334 aa13.57□□□□□ -0.24
LIG1-212ENST00000596549 PIK3R6Q5UE93 754 aa13.57□□□□□ -0.24
LIG1-212ENST00000596549 PEAR1Q5VY43 1037 aaPredicted RBP13.57□□□□□ -0.24
LIG1-212ENST00000596549 SDE2Q6IQ49 451 aa13.57□□□□□ -0.24
LIG1-212ENST00000596549 RBM43Q6ZSC3 357 aaKnown RBP13.57□□□□□ -0.24
LIG1-212ENST00000596549 BEND5Q7L4P6 421 aa13.57□□□□□ -0.24
LIG1-212ENST00000596549 LPCAT2Q7L5N7 544 aa13.57□□□□□ -0.24
LIG1-212ENST00000596549 KIAA0907Q7Z7F0 614 aaPredicted RBP13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms