RNA–Protein interactions for RNA: ENST00000596121.5

VRK3-210, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 983 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-210ENST00000596121 ANLNQ9NQW6 1124 aa11.6□□□□□ -0.55
VRK3-210ENST00000596121 DNAJC17Q9NVM6 304 aaKnown RBP11.6□□□□□ -0.55
VRK3-210ENST00000596121 TAS2R14Q9NYV8 317 aa11.6□□□□□ -0.55
VRK3-210ENST00000596121 TMEM59LQ9UK28 342 aa11.6□□□□□ -0.55
VRK3-210ENST00000596121 CEP83Q9Y592 693 aa11.6□□□□□ -0.55
VRK3-210ENST00000596121 USP34Q70CQ2 3546 aa11.6□□□□□ -0.55
VRK3-210ENST00000596121 KCNU1A8MYU2 1149 aa11.59□□□□□ -0.55
VRK3-210ENST00000596121 AP5Z1O43299 807 aa11.59□□□□□ -0.55
VRK3-210ENST00000596121 ADAM23O75077 832 aa11.59□□□□□ -0.55
VRK3-210ENST00000596121 PAPSS2O95340 614 aaPredicted RBP11.59□□□□□ -0.55
VRK3-210ENST00000596121 LATS1O95835 1130 aa11.59□□□□□ -0.55
VRK3-210ENST00000596121 APODP05090 189 aa11.59□□□□□ -0.55
VRK3-210ENST00000596121 SKILP12757 684 aa11.59□□□□□ -0.55
VRK3-210ENST00000596121 FERP16591 822 aa11.59□□□□□ -0.55
VRK3-210ENST00000596121 HOXD9P28356 352 aaPredicted RBP11.59□□□□□ -0.55
VRK3-210ENST00000596121 CHKAP35790 457 aa11.59□□□□□ -0.55
VRK3-210ENST00000596121 FLT3P36888 993 aa11.59□□□□□ -0.55
VRK3-210ENST00000596121 NBL1P41271 181 aa11.59□□□□□ -0.55
VRK3-210ENST00000596121 TNFRSF4P43489 277 aa11.59□□□□□ -0.55
VRK3-210ENST00000596121 CCR3P51677 355 aa11.59□□□□□ -0.55
VRK3-210ENST00000596121 ATXN1P54253 815 aaKnown RBP11.59□□□□□ -0.55
VRK3-210ENST00000596121 ZNF445P59923 1031 aa11.59□□□□□ -0.55
VRK3-210ENST00000596121 CDK17Q00537 523 aa11.59□□□□□ -0.55
VRK3-210ENST00000596121 CENPCQ03188 943 aa11.59□□□□□ -0.55
VRK3-210ENST00000596121 NNTQ13423 1086 aa11.59□□□□□ -0.55
VRK3-210ENST00000596121 ZNF528Q3MIS6 628 aa11.59□□□□□ -0.55
VRK3-210ENST00000596121 ARTNQ5T4W7 220 aa11.59□□□□□ -0.55
VRK3-210ENST00000596121 FAM102AQ5T9C2 384 aaPredicted RBP11.59□□□□□ -0.55
VRK3-210ENST00000596121 PIK3R6Q5UE93 754 aa11.59□□□□□ -0.55
VRK3-210ENST00000596121 RNF43Q68DV7 783 aa11.59□□□□□ -0.55
VRK3-210ENST00000596121 GRAMD4Q6IC98 578 aa11.59□□□□□ -0.55
VRK3-210ENST00000596121 ZNF571Q7Z3V5 609 aaPredicted RBP11.59□□□□□ -0.55
VRK3-210ENST00000596121 ZDHHC17Q8IUH5 632 aa11.59□□□□□ -0.55
VRK3-210ENST00000596121 CCDC33Q8N5R6 958 aa11.59□□□□□ -0.55
VRK3-210ENST00000596121 NT5C3BQ969T7 300 aa11.59□□□□□ -0.55
VRK3-210ENST00000596121 AZIN2Q96A70 460 aa11.59□□□□□ -0.55
VRK3-210ENST00000596121 PRICKLE1Q96MT3 831 aaPredicted RBP11.59□□□□□ -0.55
VRK3-210ENST00000596121 NPY6RQ99463 290 aa11.59□□□□□ -0.55
VRK3-210ENST00000596121 C11orf70Q9BRQ4 267 aa11.59□□□□□ -0.55
VRK3-210ENST00000596121 IER2Q9BTL4 223 aa11.59□□□□□ -0.55
VRK3-210ENST00000596121 XPO4Q9C0E2 1151 aaKnown RBP11.59□□□□□ -0.55
VRK3-210ENST00000596121 AIPL1Q9NZN9 384 aa11.59□□□□□ -0.55
VRK3-210ENST00000596121 DEC1Q9P2X7 70 aa11.59□□□□□ -0.55
VRK3-210ENST00000596121 MYO6Q9UM54 1294 aa11.59□□□□□ -0.55
VRK3-210ENST00000596121 PIEZO1Q92508 2521 aa11.59□□□□□ -0.55
VRK3-210ENST00000596121 KIAA1549LQ6ZVL6 1849 aa11.58□□□□□ -0.56
VRK3-210ENST00000596121 MYO18AQ92614 2054 aaKnown RBP11.58□□□□□ -0.56
VRK3-210ENST00000596121 SYNJ2BP-COX16A0A087WUM0 186 aa11.58□□□□□ -0.56
VRK3-210ENST00000596121 TCRBV5S1A1TA0A578 114 aa11.58□□□□□ -0.56
VRK3-210ENST00000596121 TBC1D3BA6NDS4 549 aa11.58□□□□□ -0.56
VRK3-210ENST00000596121 PALM2-AKAP2B1ALY0 433 aaPredicted RBP11.58□□□□□ -0.56
VRK3-210ENST00000596121 SGK1O00141 431 aa11.58□□□□□ -0.56
VRK3-210ENST00000596121 MOCS2O96007 188 aaPredicted RBP11.58□□□□□ -0.56
VRK3-210ENST00000596121 NOS2P35228 1153 aa11.58□□□□□ -0.56
VRK3-210ENST00000596121 TIE1P35590 1138 aa11.58□□□□□ -0.56
VRK3-210ENST00000596121 SCNN1AP37088 669 aa11.58□□□□□ -0.56
VRK3-210ENST00000596121 MATKP42679 507 aa11.58□□□□□ -0.56
VRK3-210ENST00000596121 PXNP49023 591 aaPredicted RBP11.58□□□□□ -0.56
VRK3-210ENST00000596121 FNTBP49356 437 aa11.58□□□□□ -0.56
VRK3-210ENST00000596121 TPM4P67936 248 aa11.58□□□□□ -0.56
VRK3-210ENST00000596121 NME3Q13232 169 aa11.58□□□□□ -0.56
VRK3-210ENST00000596121 GEN1Q17RS7 908 aa11.58□□□□□ -0.56
VRK3-210ENST00000596121 FBXO43Q4G163 708 aa11.58□□□□□ -0.56
VRK3-210ENST00000596121 FIGNQ5HY92 759 aa11.58□□□□□ -0.56
VRK3-210ENST00000596121 C10orf76Q5T2E6 689 aa11.58□□□□□ -0.56
VRK3-210ENST00000596121 NUGGCQ68CJ6 796 aa11.58□□□□□ -0.56
VRK3-210ENST00000596121 HGSNATQ68CP4 663 aa11.58□□□□□ -0.56
VRK3-210ENST00000596121 TMEM215Q68D42 235 aa11.58□□□□□ -0.56
VRK3-210ENST00000596121 TMEM92Q6UXU6 159 aa11.58□□□□□ -0.56
VRK3-210ENST00000596121 TRIM72Q6ZMU5 477 aa11.58□□□□□ -0.56
VRK3-210ENST00000596121 BNIPLQ7Z465 357 aa11.58□□□□□ -0.56
VRK3-210ENST00000596121 PHF13Q86YI8 300 aaPredicted RBP11.58□□□□□ -0.56
VRK3-210ENST00000596121 UNC45BQ8IWX7 931 aa11.58□□□□□ -0.56
VRK3-210ENST00000596121 ALLCQ8N6M5 410 aa11.58□□□□□ -0.56
VRK3-210ENST00000596121 EMC1Q8N766 993 aa11.58□□□□□ -0.56
VRK3-210ENST00000596121 TERB1Q8NA31 727 aa11.58□□□□□ -0.56
VRK3-210ENST00000596121 IL17RCQ8NAC3 791 aa11.58□□□□□ -0.56
VRK3-210ENST00000596121 ZBTB44Q8NCP5 570 aa11.58□□□□□ -0.56
VRK3-210ENST00000596121 JOSD2Q8TAC2 188 aa11.58□□□□□ -0.56
VRK3-210ENST00000596121 WFDC5Q8TCV5 224 aa11.58□□□□□ -0.56
VRK3-210ENST00000596121 DDI1Q8WTU0 396 aa11.58□□□□□ -0.56
VRK3-210ENST00000596121 FAM122AQ96E09 287 aa11.58□□□□□ -0.56
VRK3-210ENST00000596121 LMLNQ96KR4 655 aa11.58□□□□□ -0.56
VRK3-210ENST00000596121 XPO6Q96QU8 1125 aaKnown RBP11.58□□□□□ -0.56
VRK3-210ENST00000596121 ACOX2Q99424 681 aa11.58□□□□□ -0.56
VRK3-210ENST00000596121 TBCBQ99426 244 aa11.58□□□□□ -0.56
VRK3-210ENST00000596121 PRMT1Q99873 361 aaKnown RBP11.58□□□□□ -0.56
VRK3-210ENST00000596121 TRIM62Q9BVG3 475 aa11.58□□□□□ -0.56
VRK3-210ENST00000596121 EDEM3Q9BZQ6 932 aa11.58□□□□□ -0.56
VRK3-210ENST00000596121 NUCKS1Q9H1E3 243 aaKnown RBP11.58□□□□□ -0.56
VRK3-210ENST00000596121 HAUS4Q9H6D7 363 aa11.58□□□□□ -0.56
VRK3-210ENST00000596121 FAM204AQ9H8W3 233 aa11.58□□□□□ -0.56
VRK3-210ENST00000596121 TMPRSS4Q9NRS4 437 aa11.58□□□□□ -0.56
VRK3-210ENST00000596121 PIGVQ9NUD9 493 aa11.58□□□□□ -0.56
VRK3-210ENST00000596121 DDIT4Q9NX09 232 aa11.58□□□□□ -0.56
VRK3-210ENST00000596121 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP11.58□□□□□ -0.56
VRK3-210ENST00000596121 COX16Q9P0S2 106 aa11.58□□□□□ -0.56
VRK3-210ENST00000596121 SLC27A6Q9Y2P4 619 aa11.58□□□□□ -0.56
VRK3-210ENST00000596121 SNX10Q9Y5X0 201 aa11.58□□□□□ -0.56
VRK3-210ENST00000596121 WDR87Q6ZQQ6 2873 aa11.57□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms