RNA–Protein interactions for RNA: ENST00000594090.5

VRK3-206, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best)

Gene VRK3, Length 1,448 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-206ENST00000594090 TPM3P06753 285 aa15.13■□□□□ 0.01
VRK3-206ENST00000594090 CHRM1P11229 460 aaPredicted RBP15.13■□□□□ 0.01
VRK3-206ENST00000594090 TDGF1P13385 188 aa15.13■□□□□ 0.01
VRK3-206ENST00000594090 SLC6A4P31645 630 aa15.13■□□□□ 0.01
VRK3-206ENST00000594090 NSFP46459 744 aaKnown RBP15.13■□□□□ 0.01
VRK3-206ENST00000594090 CXCL12P48061 93 aa15.13■□□□□ 0.01
VRK3-206ENST00000594090 RNASE9P60153 205 aaKnown RBP15.13■□□□□ 0.01
VRK3-206ENST00000594090 PTP4A2Q12974 167 aa15.13■□□□□ 0.01
VRK3-206ENST00000594090 PPP2R5DQ14738 602 aa15.13■□□□□ 0.01
VRK3-206ENST00000594090 ZNF528Q3MIS6 628 aa15.13■□□□□ 0.01
VRK3-206ENST00000594090 MPPE1Q53F39 396 aa15.13■□□□□ 0.01
VRK3-206ENST00000594090 ZC3H12AQ5D1E8 599 aaKnown RBP15.13■□□□□ 0.01
VRK3-206ENST00000594090 OTUD1Q5VV17 481 aaPredicted RBP15.13■□□□□ 0.01
VRK3-206ENST00000594090 CCDC26Q8TAB7 109 aa15.13■□□□□ 0.01
VRK3-206ENST00000594090 OLIG1Q8TAK6 271 aa15.13■□□□□ 0.01
VRK3-206ENST00000594090 USP33Q8TEY7 942 aa15.13■□□□□ 0.01
VRK3-206ENST00000594090 DDI1Q8WTU0 396 aa15.13■□□□□ 0.01
VRK3-206ENST00000594090 NPY6RQ99463 290 aa15.13■□□□□ 0.01
VRK3-206ENST00000594090 C11orf70Q9BRQ4 267 aa15.13■□□□□ 0.01
VRK3-206ENST00000594090 METTL5Q9NRN9 209 aaKnown RBP15.13■□□□□ 0.01
VRK3-206ENST00000594090 RRN3Q9NYV6 651 aa15.13■□□□□ 0.01
VRK3-206ENST00000594090 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP15.13■□□□□ 0.01
VRK3-206ENST00000594090 FBXO10Q9UK96 956 aa15.13■□□□□ 0.01
VRK3-206ENST00000594090 ITIH6Q6UXX5 1313 aa15.13■□□□□ 0.01
VRK3-206ENST00000594090 SYNJ2BP-COX16A0A087WUM0 186 aa15.12■□□□□ 0.01
VRK3-206ENST00000594090 GOLGA6L7A0A1B0GV03 622 aa15.12■□□□□ 0.01
VRK3-206ENST00000594090 TBC1D3BA6NDS4 549 aa15.12■□□□□ 0.01
VRK3-206ENST00000594090 ANTXRLA6NF34 631 aa15.12■□□□□ 0.01
VRK3-206ENST00000594090 M0QYT0 321 aa15.12■□□□□ 0.01
VRK3-206ENST00000594090 TSPAN3O60637 253 aa15.12■□□□□ 0.01
VRK3-206ENST00000594090 HOXD9P28356 352 aaPredicted RBP15.12■□□□□ 0.01
VRK3-206ENST00000594090 GBP1P32455 592 aa15.12■□□□□ 0.01
VRK3-206ENST00000594090 FLT3P36888 993 aa15.12■□□□□ 0.01
VRK3-206ENST00000594090 PRKCIP41743 596 aa15.12■□□□□ 0.01
VRK3-206ENST00000594090 TNFRSF4P43489 277 aa15.12■□□□□ 0.01
VRK3-206ENST00000594090 DGKGP49619 791 aa15.12■□□□□ 0.01
VRK3-206ENST00000594090 SGSHP51688 502 aa15.12■□□□□ 0.01
VRK3-206ENST00000594090 GSCP56915 257 aaPredicted RBP15.12■□□□□ 0.01
VRK3-206ENST00000594090 RFWD3Q6PCD5 774 aa15.12■□□□□ 0.01
VRK3-206ENST00000594090 MON1BQ7L1V2 547 aa15.12■□□□□ 0.01
VRK3-206ENST00000594090 ARCQ7LC44 396 aa15.12■□□□□ 0.01
VRK3-206ENST00000594090 PHF13Q86YI8 300 aaPredicted RBP15.12■□□□□ 0.01
VRK3-206ENST00000594090 ACDQ96AP0 544 aa15.12■□□□□ 0.01
VRK3-206ENST00000594090 IQCDQ96DY2 449 aa15.12■□□□□ 0.01
VRK3-206ENST00000594090 DDX50Q9BQ39 737 aaKnown RBP15.12■□□□□ 0.01
VRK3-206ENST00000594090 ADAM33Q9BZ11 813 aa15.12■□□□□ 0.01
VRK3-206ENST00000594090 HAUS4Q9H6D7 363 aa15.12■□□□□ 0.01
VRK3-206ENST00000594090 SLTMQ9NWH9 1034 aaKnown RBP eCLIP15.12■□□□□ 0.01
VRK3-206ENST00000594090 COX16Q9P0S2 106 aa15.12■□□□□ 0.01
VRK3-206ENST00000594090 XPO7Q9UIA9 1087 aaKnown RBP15.12■□□□□ 0.01
VRK3-206ENST00000594090 TMEM59LQ9UK28 342 aa15.12■□□□□ 0.01
VRK3-206ENST00000594090 STAP1Q9ULZ2 295 aa15.12■□□□□ 0.01
VRK3-206ENST00000594090 CACNA1IQ9P0X4 2223 aa15.12■□□□□ 0.01
VRK3-206ENST00000594090 MUC6Q6W4X9 2439 aa15.12■□□□□ 0.01
VRK3-206ENST00000594090 K7ESF4 209 aa15.11■□□□□ 0.01
VRK3-206ENST00000594090 CBFA2T2O43439 604 aa15.11■□□□□ 0.01
VRK3-206ENST00000594090 CALB1P05937 261 aa15.11■□□□□ 0.01
VRK3-206ENST00000594090 CISD3P0C7P0 127 aa15.11■□□□□ 0.01
VRK3-206ENST00000594090 SLC2A3P11169 496 aa15.11■□□□□ 0.01
VRK3-206ENST00000594090 TFE3P19532 575 aaPredicted RBP15.11■□□□□ 0.01
VRK3-206ENST00000594090 CCR1P32246 355 aa15.11■□□□□ 0.01
VRK3-206ENST00000594090 PLA2G5P39877 138 aa15.11■□□□□ 0.01
VRK3-206ENST00000594090 NBL1P41271 181 aa15.11■□□□□ 0.01
VRK3-206ENST00000594090 KIR2DL1P43626 348 aaPredicted RBP15.11■□□□□ 0.01
VRK3-206ENST00000594090 SULT1E1P49888 294 aa15.11■□□□□ 0.01
VRK3-206ENST00000594090 MRPS21P82921 87 aaKnown RBP15.11■□□□□ 0.01
VRK3-206ENST00000594090 NME3Q13232 169 aa15.11■□□□□ 0.01
VRK3-206ENST00000594090 C2orf27AQ580R0 203 aa15.11■□□□□ 0.01
VRK3-206ENST00000594090 C10orf76Q5T2E6 689 aa15.11■□□□□ 0.01
VRK3-206ENST00000594090 PIK3R6Q5UE93 754 aa15.11■□□□□ 0.01
VRK3-206ENST00000594090 TRNP1Q6NT89 227 aa15.11■□□□□ 0.01
VRK3-206ENST00000594090 NUDT18Q6ZVK8 323 aa15.11■□□□□ 0.01
VRK3-206ENST00000594090 NT5C3BQ969T7 300 aa15.11■□□□□ 0.01
VRK3-206ENST00000594090 BTN2A3PQ96KV6 586 aa15.11■□□□□ 0.01
VRK3-206ENST00000594090 PRICKLE1Q96MT3 831 aaPredicted RBP15.11■□□□□ 0.01
VRK3-206ENST00000594090 IRX2Q9BZI1 471 aaPredicted RBP15.11■□□□□ 0.01
VRK3-206ENST00000594090 NUCKS1Q9H1E3 243 aaKnown RBP15.11■□□□□ 0.01
VRK3-206ENST00000594090 ADAM22Q9P0K1 906 aa15.11■□□□□ 0.01
VRK3-206ENST00000594090 CALCOCO1Q9P1Z2 691 aa15.11■□□□□ 0.01
VRK3-206ENST00000594090 CAPN11Q9UMQ6 739 aa15.11■□□□□ 0.01
VRK3-206ENST00000594090 FANCMQ8IYD8 2048 aa15.1■□□□□ 0.01
VRK3-206ENST00000594090 KCNU1A8MYU2 1149 aa15.1■□□□□ 0.01
VRK3-206ENST00000594090 PRRT4C9JH25 899 aa15.1■□□□□ 0.01
VRK3-206ENST00000594090 GYPCP04921 128 aa15.1■□□□□ 0.01
VRK3-206ENST00000594090 TNFAIP3P21580 790 aa15.1■□□□□ 0.01
VRK3-206ENST00000594090 TIE1P35590 1138 aa15.1■□□□□ 0.01
VRK3-206ENST00000594090 C1QBPQ07021 282 aaKnown RBP15.1■□□□□ 0.01
VRK3-206ENST00000594090 KLHL30Q0D2K2 578 aa15.1■□□□□ 0.01
VRK3-206ENST00000594090 SLC25A52Q3SY17 297 aa15.1■□□□□ 0.01
VRK3-206ENST00000594090 EMC10Q5UCC4 262 aa15.1■□□□□ 0.01
VRK3-206ENST00000594090 RAP1GAP2Q684P5 730 aa15.1■□□□□ 0.01
VRK3-206ENST00000594090 SYT13Q7L8C5 426 aa15.1■□□□□ 0.01
VRK3-206ENST00000594090 ZNF571Q7Z3V5 609 aaPredicted RBP15.1■□□□□ 0.01
VRK3-206ENST00000594090 PHLDB2Q86SQ0 1253 aa15.1■□□□□ 0.01
VRK3-206ENST00000594090 ATP6V0D2Q8N8Y2 350 aa15.1■□□□□ 0.01
VRK3-206ENST00000594090 NELL1Q92832 810 aa15.1■□□□□ 0.01
VRK3-206ENST00000594090 RNF34Q969K3 372 aa15.1■□□□□ 0.01
VRK3-206ENST00000594090 FAM122AQ96E09 287 aa15.1■□□□□ 0.01
VRK3-206ENST00000594090 TMA16Q96EY4 203 aaKnown RBP15.1■□□□□ 0.01
VRK3-206ENST00000594090 PGAP3Q96FM1 320 aaPredicted RBP15.1■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 93.6 ms