RNA–Protein interactions for RNA: ENST00000590630.5

LIG3-213, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 904 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-213ENST00000590630 C11orf70Q9BRQ4 267 aa12.37□□□□□ -0.43
LIG3-213ENST00000590630 SYT11Q9BT88 431 aa12.37□□□□□ -0.43
LIG3-213ENST00000590630 DNAJC17Q9NVM6 304 aaKnown RBP12.37□□□□□ -0.43
LIG3-213ENST00000590630 SLTMQ9NWH9 1034 aaKnown RBP eCLIP12.37□□□□□ -0.43
LIG3-213ENST00000590630 DDIT4Q9NX09 232 aa12.37□□□□□ -0.43
LIG3-213ENST00000590630 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP12.37□□□□□ -0.43
LIG3-213ENST00000590630 STAP1Q9ULZ2 295 aa12.37□□□□□ -0.43
LIG3-213ENST00000590630 CAPN11Q9UMQ6 739 aa12.37□□□□□ -0.43
LIG3-213ENST00000590630 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP12.37□□□□□ -0.43
LIG3-213ENST00000590630 USP34Q70CQ2 3546 aa12.37□□□□□ -0.43
LIG3-213ENST00000590630 CHURC1-FNTBB4DL54 471 aa12.36□□□□□ -0.43
LIG3-213ENST00000590630 H0Y858 1186 aa12.36□□□□□ -0.43
LIG3-213ENST00000590630 GOLGA8SH3BPF8 625 aa12.36□□□□□ -0.43
LIG3-213ENST00000590630 K7EQS6 105 aa12.36□□□□□ -0.43
LIG3-213ENST00000590630 GFRA2O00451 464 aa12.36□□□□□ -0.43
LIG3-213ENST00000590630 ACSL4O60488 711 aa12.36□□□□□ -0.43
LIG3-213ENST00000590630 PAPSS2O95340 614 aaPredicted RBP12.36□□□□□ -0.43
LIG3-213ENST00000590630 TNFAIP3P21580 790 aa12.36□□□□□ -0.43
LIG3-213ENST00000590630 CCR1P32246 355 aa12.36□□□□□ -0.43
LIG3-213ENST00000590630 TNFRSF4P43489 277 aa12.36□□□□□ -0.43
LIG3-213ENST00000590630 CXCL12P48061 93 aa12.36□□□□□ -0.43
LIG3-213ENST00000590630 DGKGP49619 791 aa12.36□□□□□ -0.43
LIG3-213ENST00000590630 RNASE9P60153 205 aaKnown RBP12.36□□□□□ -0.43
LIG3-213ENST00000590630 PITX1P78337 314 aaPredicted RBP12.36□□□□□ -0.43
LIG3-213ENST00000590630 ZBED6P86452 979 aa12.36□□□□□ -0.43
LIG3-213ENST00000590630 KDSRQ06136 332 aa12.36□□□□□ -0.43
LIG3-213ENST00000590630 C1QBPQ07021 282 aaKnown RBP12.36□□□□□ -0.43
LIG3-213ENST00000590630 KLHL30Q0D2K2 578 aa12.36□□□□□ -0.43
LIG3-213ENST00000590630 SLC25A52Q3SY17 297 aa12.36□□□□□ -0.43
LIG3-213ENST00000590630 MPPE1Q53F39 396 aa12.36□□□□□ -0.43
LIG3-213ENST00000590630 FAM133BQ5BKY9 247 aaKnown RBP12.36□□□□□ -0.43
LIG3-213ENST00000590630 ZC3H12AQ5D1E8 599 aaKnown RBP12.36□□□□□ -0.43
LIG3-213ENST00000590630 MPP7Q5T2T1 576 aa12.36□□□□□ -0.43
LIG3-213ENST00000590630 E4F1Q66K89 784 aaPredicted RBP12.36□□□□□ -0.43
LIG3-213ENST00000590630 SPECC1LQ69YQ0 1117 aa12.36□□□□□ -0.43
LIG3-213ENST00000590630 GRAMD4Q6IC98 578 aa12.36□□□□□ -0.43
LIG3-213ENST00000590630 MON1BQ7L1V2 547 aa12.36□□□□□ -0.43
LIG3-213ENST00000590630 MAML2Q8IZL2 1156 aaPredicted RBP12.36□□□□□ -0.43
LIG3-213ENST00000590630 TERB1Q8NA31 727 aa12.36□□□□□ -0.43
LIG3-213ENST00000590630 DDI1Q8WTU0 396 aa12.36□□□□□ -0.43
LIG3-213ENST00000590630 BHMTQ93088 406 aa12.36□□□□□ -0.43
LIG3-213ENST00000590630 ACDQ96AP0 544 aa12.36□□□□□ -0.43
LIG3-213ENST00000590630 PGAP3Q96FM1 320 aaPredicted RBP12.36□□□□□ -0.43
LIG3-213ENST00000590630 BTN2A3PQ96KV6 586 aa12.36□□□□□ -0.43
LIG3-213ENST00000590630 NPY6RQ99463 290 aa12.36□□□□□ -0.43
LIG3-213ENST00000590630 SLC2A11Q9BYW1 496 aa12.36□□□□□ -0.43
LIG3-213ENST00000590630 HAUS4Q9H6D7 363 aa12.36□□□□□ -0.43
LIG3-213ENST00000590630 PLK2Q9NYY3 685 aa12.36□□□□□ -0.43
LIG3-213ENST00000590630 ADAM22Q9P0K1 906 aa12.36□□□□□ -0.43
LIG3-213ENST00000590630 SLC12A6Q9UHW9 1150 aa12.36□□□□□ -0.43
LIG3-213ENST00000590630 TMEM59LQ9UK28 342 aa12.36□□□□□ -0.43
LIG3-213ENST00000590630 FBXO10Q9UK96 956 aa12.36□□□□□ -0.43
LIG3-213ENST00000590630 LUC7L2Q9Y383 392 aaKnown RBP12.36□□□□□ -0.43
LIG3-213ENST00000590630 PAXBP1Q9Y5B6 917 aa12.36□□□□□ -0.43
LIG3-213ENST00000590630 BZW2Q9Y6E2 419 aaKnown RBP12.36□□□□□ -0.43
LIG3-213ENST00000590630 PIEZO1Q92508 2521 aa12.35□□□□□ -0.43
LIG3-213ENST00000590630 FAM170AA1A519 330 aa12.35□□□□□ -0.43
LIG3-213ENST00000590630 TBC1D3BA6NDS4 549 aa12.35□□□□□ -0.43
LIG3-213ENST00000590630 M0QYT0 321 aa12.35□□□□□ -0.43
LIG3-213ENST00000590630 F9P00740 461 aa12.35□□□□□ -0.43
LIG3-213ENST00000590630 GYPCP04921 128 aa12.35□□□□□ -0.43
LIG3-213ENST00000590630 ABCB4P21439 1286 aa12.35□□□□□ -0.43
LIG3-213ENST00000590630 FLT3P36888 993 aa12.35□□□□□ -0.43
LIG3-213ENST00000590630 MRPS21P82921 87 aaKnown RBP12.35□□□□□ -0.43
LIG3-213ENST00000590630 MESP2Q0VG99 397 aa12.35□□□□□ -0.43
LIG3-213ENST00000590630 PTP4A2Q12974 167 aa12.35□□□□□ -0.43
LIG3-213ENST00000590630 NME3Q13232 169 aa12.35□□□□□ -0.43
LIG3-213ENST00000590630 TRIM14Q14142 442 aa12.35□□□□□ -0.43
LIG3-213ENST00000590630 HSF5Q4G112 596 aaPredicted RBP12.35□□□□□ -0.43
LIG3-213ENST00000590630 PIK3R6Q5UE93 754 aa12.35□□□□□ -0.43
LIG3-213ENST00000590630 ACAD10Q6JQN1 1059 aa12.35□□□□□ -0.43
LIG3-213ENST00000590630 ATP6V0D2Q8N8Y2 350 aa12.35□□□□□ -0.43
LIG3-213ENST00000590630 C3orf20Q8ND61 904 aa12.35□□□□□ -0.43
LIG3-213ENST00000590630 RPLP0P6Q8NHW5 317 aa12.35□□□□□ -0.43
LIG3-213ENST00000590630 OLIG1Q8TAK6 271 aa12.35□□□□□ -0.43
LIG3-213ENST00000590630 KCNV2Q8TDN2 545 aa12.35□□□□□ -0.43
LIG3-213ENST00000590630 USP33Q8TEY7 942 aa12.35□□□□□ -0.43
LIG3-213ENST00000590630 RNF34Q969K3 372 aa12.35□□□□□ -0.43
LIG3-213ENST00000590630 TMA16Q96EY4 203 aaKnown RBP12.35□□□□□ -0.43
LIG3-213ENST00000590630 P2RY11Q96G91 374 aa12.35□□□□□ -0.43
LIG3-213ENST00000590630 VCPIP1Q96JH7 1222 aa12.35□□□□□ -0.43
LIG3-213ENST00000590630 FAM126AQ9BYI3 521 aaPredicted RBP12.35□□□□□ -0.43
LIG3-213ENST00000590630 METTL5Q9NRN9 209 aaKnown RBP12.35□□□□□ -0.43
LIG3-213ENST00000590630 SLC27A6Q9Y2P4 619 aa12.35□□□□□ -0.43
LIG3-213ENST00000590630 SYNJ2BP-COX16A0A087WUM0 186 aa12.34□□□□□ -0.43
LIG3-213ENST00000590630 TYW5A2RUC4 315 aaKnown RBP12.34□□□□□ -0.43
LIG3-213ENST00000590630 KCNU1A8MYU2 1149 aa12.34□□□□□ -0.43
LIG3-213ENST00000590630 MOCS2O96007 188 aaPredicted RBP12.34□□□□□ -0.43
LIG3-213ENST00000590630 CISD3P0C7P0 127 aa12.34□□□□□ -0.43
LIG3-213ENST00000590630 SP9P0CG40 484 aa12.34□□□□□ -0.43
LIG3-213ENST00000590630 KRT3P12035 628 aa12.34□□□□□ -0.43
LIG3-213ENST00000590630 GZMAP12544 262 aa12.34□□□□□ -0.43
LIG3-213ENST00000590630 HOXD9P28356 352 aaPredicted RBP12.34□□□□□ -0.43
LIG3-213ENST00000590630 SLC6A4P31645 630 aa12.34□□□□□ -0.43
LIG3-213ENST00000590630 SULT1E1P49888 294 aa12.34□□□□□ -0.43
LIG3-213ENST00000590630 NRLP54845 237 aa12.34□□□□□ -0.43
LIG3-213ENST00000590630 SEC13P55735 322 aa12.34□□□□□ -0.43
LIG3-213ENST00000590630 SATB1Q01826 763 aa12.34□□□□□ -0.43
LIG3-213ENST00000590630 NHLH1Q02575 133 aa12.34□□□□□ -0.43
LIG3-213ENST00000590630 CSTF1Q05048 431 aaKnown RBP12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms