RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 EDEM1Q92611 657 aa14.67□□□□□ -0.06
LIG3-205ENST00000585941 HIPK3Q9H422 1215 aa14.67□□□□□ -0.06
LIG3-205ENST00000585941 LRRC4CQ9HCJ2 640 aa14.67□□□□□ -0.06
LIG3-205ENST00000585941 ETNK2Q9NVF9 386 aa14.67□□□□□ -0.06
LIG3-205ENST00000585941 ZMYND8Q9ULU4 1186 aaPredicted RBP14.67□□□□□ -0.06
LIG3-205ENST00000585941 VWA8A3KMH1 1905 aa14.67□□□□□ -0.06
LIG3-205ENST00000585941 EXOC1LA0A1B0GW35 172 aa14.66□□□□□ -0.06
LIG3-205ENST00000585941 GOLGA8MH3BSY2 632 aa14.66□□□□□ -0.06
LIG3-205ENST00000585941 H7C4K7 107 aa14.66□□□□□ -0.06
LIG3-205ENST00000585941 DCLK1O15075 740 aa14.66□□□□□ -0.06
LIG3-205ENST00000585941 TMEM63AO94886 807 aa14.66□□□□□ -0.06
LIG3-205ENST00000585941 IGLV3-25P01717 112 aa14.66□□□□□ -0.06
LIG3-205ENST00000585941 GLUD2P49448 558 aa14.66□□□□□ -0.06
LIG3-205ENST00000585941 MTFR1Q15390 333 aa14.66□□□□□ -0.06
LIG3-205ENST00000585941 CCDC38Q502W7 563 aa14.66□□□□□ -0.06
LIG3-205ENST00000585941 FAM171A1Q5VUB5 890 aa14.66□□□□□ -0.06
LIG3-205ENST00000585941 TAC4Q86UU9 113 aa14.66□□□□□ -0.06
LIG3-205ENST00000585941 CRIPAKQ8N1N5 446 aa14.66□□□□□ -0.06
LIG3-205ENST00000585941 TET1Q8NFU7 2136 aa14.66□□□□□ -0.06
LIG3-205ENST00000585941 DQX1Q8TE96 717 aaKnown RBP14.66□□□□□ -0.06
LIG3-205ENST00000585941 HTR3CQ8WXA8 447 aa14.66□□□□□ -0.06
LIG3-205ENST00000585941 LRRC39Q96DD0 335 aa14.66□□□□□ -0.06
LIG3-205ENST00000585941 OSBPL2Q9H1P3 480 aa14.66□□□□□ -0.06
LIG3-205ENST00000585941 VPS37BQ9H9H4 285 aa14.66□□□□□ -0.06
LIG3-205ENST00000585941 ABI2Q9NYB9 513 aaPredicted RBP14.66□□□□□ -0.06
LIG3-205ENST00000585941 SLC24A2Q9UI40 661 aa14.66□□□□□ -0.06
LIG3-205ENST00000585941 SCML2Q9UQR0 700 aa14.66□□□□□ -0.06
LIG3-205ENST00000585941 ACTL7BQ9Y614 415 aa14.66□□□□□ -0.06
LIG3-205ENST00000585941 MYO16Q9Y6X6 1858 aa14.66□□□□□ -0.06
LIG3-205ENST00000585941 PLXNA3P51805 1871 aa14.65□□□□□ -0.06
LIG3-205ENST00000585941 FNDC1Q4ZHG4 1894 aaPredicted RBP14.65□□□□□ -0.06
LIG3-205ENST00000585941 MTSS1O43312 755 aa14.65□□□□□ -0.06
LIG3-205ENST00000585941 OPHN1O60890 802 aa14.65□□□□□ -0.06
LIG3-205ENST00000585941 TPSB2P20231 275 aa14.65□□□□□ -0.06
LIG3-205ENST00000585941 LSP1P33241 339 aa14.65□□□□□ -0.06
LIG3-205ENST00000585941 SERPINB6P35237 376 aa14.65□□□□□ -0.06
LIG3-205ENST00000585941 FDFT1P37268 417 aa14.65□□□□□ -0.06
LIG3-205ENST00000585941 IFI35P80217 286 aaPredicted RBP14.65□□□□□ -0.06
LIG3-205ENST00000585941 SARNPP82979 210 aaKnown RBP14.65□□□□□ -0.06
LIG3-205ENST00000585941 HTRA3P83110 453 aa14.65□□□□□ -0.06
LIG3-205ENST00000585941 CDK16Q00536 496 aa14.65□□□□□ -0.06
LIG3-205ENST00000585941 PRKD1Q15139 912 aaPredicted RBP14.65□□□□□ -0.06
LIG3-205ENST00000585941 TPSAB1Q15661 275 aa14.65□□□□□ -0.06
LIG3-205ENST00000585941 FNBP1LQ5T0N5 605 aa14.65□□□□□ -0.06
LIG3-205ENST00000585941 C1orf53Q5VUE5 145 aa14.65□□□□□ -0.06
LIG3-205ENST00000585941 LRRC31Q6UY01 552 aa14.65□□□□□ -0.06
LIG3-205ENST00000585941 SLC39A5Q6ZMH5 540 aa14.65□□□□□ -0.06
LIG3-205ENST00000585941 ARHGEF18Q6ZSZ5 1173 aa14.65□□□□□ -0.06
LIG3-205ENST00000585941 MON1AQ86VX9 555 aa14.65□□□□□ -0.06
LIG3-205ENST00000585941 SCN4BQ8IWT1 228 aa14.65□□□□□ -0.06
LIG3-205ENST00000585941 PALM2Q8IXS6 379 aa14.65□□□□□ -0.06
LIG3-205ENST00000585941 NUP93Q8N1F7 819 aa14.65□□□□□ -0.06
LIG3-205ENST00000585941 LRRC43Q8N309 656 aa14.65□□□□□ -0.06
LIG3-205ENST00000585941 SCAMP5Q8TAC9 235 aa14.65□□□□□ -0.06
LIG3-205ENST00000585941 ADAM32Q8TC27 787 aa14.65□□□□□ -0.06
LIG3-205ENST00000585941 C2orf15Q8WU43 125 aaKnown RBP14.65□□□□□ -0.06
LIG3-205ENST00000585941 RNF34Q969K3 372 aa14.65□□□□□ -0.06
LIG3-205ENST00000585941 MAGEB5Q9BZ81 275 aa14.65□□□□□ -0.06
LIG3-205ENST00000585941 TKTL2Q9H0I9 626 aa14.65□□□□□ -0.06
LIG3-205ENST00000585941 SMOC2Q9H3U7 446 aa14.65□□□□□ -0.06
LIG3-205ENST00000585941 COMMD8Q9NX08 183 aa14.65□□□□□ -0.06
LIG3-205ENST00000585941 DYNC1LI1Q9Y6G9 523 aaKnown RBP14.65□□□□□ -0.06
LIG3-205ENST00000585941 ZNF638Q14966 1978 aaKnown RBP14.65□□□□□ -0.06
LIG3-205ENST00000585941 SCN5AQ14524 2016 aa14.65□□□□□ -0.06
LIG3-205ENST00000585941 MICAL3Q7RTP6 2002 aa14.65□□□□□ -0.06
LIG3-205ENST00000585941 A0A0A0MRY4 1105 aa14.65□□□□□ -0.06
LIG3-205ENST00000585941 TCRBV7S3A2A0A539 114 aa14.65□□□□□ -0.06
LIG3-205ENST00000585941 IRAK2O43187 625 aa14.65□□□□□ -0.06
LIG3-205ENST00000585941 MFSD11O43934 449 aa14.65□□□□□ -0.06
LIG3-205ENST00000585941 MX2P20592 715 aa14.65□□□□□ -0.06
LIG3-205ENST00000585941 SLC11A1P49279 550 aa14.65□□□□□ -0.06
LIG3-205ENST00000585941 GUCY1A3Q02108 690 aa14.65□□□□□ -0.06
LIG3-205ENST00000585941 EIF4EBP2Q13542 120 aaPredicted RBP14.65□□□□□ -0.06
LIG3-205ENST00000585941 FASTKD3Q14CZ7 662 aaKnown RBP14.65□□□□□ -0.06
LIG3-205ENST00000585941 ZSCAN26Q16670 478 aa14.65□□□□□ -0.06
LIG3-205ENST00000585941 KLHL38Q2WGJ6 581 aa14.65□□□□□ -0.06
LIG3-205ENST00000585941 BBS9Q3SYG4 887 aa14.65□□□□□ -0.06
LIG3-205ENST00000585941 ANKS3Q6ZW76 656 aa14.65□□□□□ -0.06
LIG3-205ENST00000585941 TADA2BQ86TJ2 420 aa14.65□□□□□ -0.06
LIG3-205ENST00000585941 SPPL2BQ8TCT7 592 aa14.65□□□□□ -0.06
LIG3-205ENST00000585941 ARHGEF2Q92974 986 aaKnown RBP14.65□□□□□ -0.06
LIG3-205ENST00000585941 SPATA13Q96N96 652 aa14.65□□□□□ -0.06
LIG3-205ENST00000585941 HAPLN3Q96S86 360 aa14.65□□□□□ -0.06
LIG3-205ENST00000585941 EPN3Q9H201 632 aa14.65□□□□□ -0.06
LIG3-205ENST00000585941 ARHGEF38Q9NXL2 777 aa14.65□□□□□ -0.06
LIG3-205ENST00000585941 OR12D3Q9UGF7 316 aa14.65□□□□□ -0.06
LIG3-205ENST00000585941 ERICH4A6NGS2 130 aa14.64□□□□□ -0.07
LIG3-205ENST00000585941 RTN3O95197 1032 aaPredicted RBP14.64□□□□□ -0.07
LIG3-205ENST00000585941 GSTA2P09210 222 aa14.64□□□□□ -0.07
LIG3-205ENST00000585941 OR4Q2P0C623 313 aa14.64□□□□□ -0.07
LIG3-205ENST00000585941 ERCC2P18074 760 aa14.64□□□□□ -0.07
LIG3-205ENST00000585941 CCR1P32246 355 aa14.64□□□□□ -0.07
LIG3-205ENST00000585941 SEMA5AQ13591 1074 aa14.64□□□□□ -0.07
LIG3-205ENST00000585941 PPP2R5DQ14738 602 aa14.64□□□□□ -0.07
LIG3-205ENST00000585941 FUT10Q6P4F1 479 aa14.64□□□□□ -0.07
LIG3-205ENST00000585941 CEP57Q86XR8 500 aa14.64□□□□□ -0.07
LIG3-205ENST00000585941 CCDC13Q8IYE1 715 aa14.64□□□□□ -0.07
LIG3-205ENST00000585941 FBXO36Q8NEA4 188 aa14.64□□□□□ -0.07
LIG3-205ENST00000585941 CCDC110Q8TBZ0 833 aa14.64□□□□□ -0.07
LIG3-205ENST00000585941 CRISPLD2Q9H0B8 497 aa14.64□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms