RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 MTCL1Q9Y4B5 1905 aaKnown RBP15.82■□□□□ 0.12
SS18-215ENST00000580642 SYNJ2BP-COX16A0A087WUM0 186 aa15.82■□□□□ 0.12
SS18-215ENST00000580642 TRAV19A0A0A6YYK7 116 aa15.82■□□□□ 0.12
SS18-215ENST00000580642 SLC12A8A0AV02 714 aa15.82■□□□□ 0.12
SS18-215ENST00000580642 SPDYE4A6NLX3 237 aa15.82■□□□□ 0.12
SS18-215ENST00000580642 RFPL2O75678 378 aa15.82■□□□□ 0.12
SS18-215ENST00000580642 RHOP08100 348 aa15.82■□□□□ 0.12
SS18-215ENST00000580642 HDCP19113 662 aa15.82■□□□□ 0.12
SS18-215ENST00000580642 TGM2P21980 687 aa15.82■□□□□ 0.12
SS18-215ENST00000580642 IL4RP24394 825 aa15.82■□□□□ 0.12
SS18-215ENST00000580642 CHRNA3P32297 505 aa15.82■□□□□ 0.12
SS18-215ENST00000580642 NR2C2P49116 596 aa15.82■□□□□ 0.12
SS18-215ENST00000580642 SLC11A2P49281 568 aa15.82■□□□□ 0.12
SS18-215ENST00000580642 CCNG2Q16589 344 aa15.82■□□□□ 0.12
SS18-215ENST00000580642 GLE1Q53GS7 698 aaKnown RBP15.82■□□□□ 0.12
SS18-215ENST00000580642 RAB6CQ53S08 254 aa15.82■□□□□ 0.12
SS18-215ENST00000580642 SLC9A4Q6AI14 798 aa15.82■□□□□ 0.12
SS18-215ENST00000580642 CCDC70Q6NSX1 233 aa15.82■□□□□ 0.12
SS18-215ENST00000580642 BZW1Q7L1Q6 419 aaKnown RBP15.82■□□□□ 0.12
SS18-215ENST00000580642 RBM23Q86U06 439 aaKnown RBP15.82■□□□□ 0.12
SS18-215ENST00000580642 MMGT1Q8N4V1 131 aa15.82■□□□□ 0.12
SS18-215ENST00000580642 C12orf50Q8NA57 414 aaPredicted RBP15.82■□□□□ 0.12
SS18-215ENST00000580642 TRAF3IP1Q8TDR0 691 aaPredicted RBP15.82■□□□□ 0.12
SS18-215ENST00000580642 ZNF707Q96C28 371 aaPredicted RBP15.82■□□□□ 0.12
SS18-215ENST00000580642 DDX50Q9BQ39 737 aaKnown RBP15.82■□□□□ 0.12
SS18-215ENST00000580642 RAB6CQ9H0N0 254 aa15.82■□□□□ 0.12
SS18-215ENST00000580642 ATXN3LQ9H3M9 355 aa15.82■□□□□ 0.12
SS18-215ENST00000580642 SLITRK6Q9H5Y7 841 aa15.82■□□□□ 0.12
SS18-215ENST00000580642 TASP1Q9H6P5 420 aa15.82■□□□□ 0.12
SS18-215ENST00000580642 LRRC19Q9H756 370 aa15.82■□□□□ 0.12
SS18-215ENST00000580642 COX16Q9P0S2 106 aa15.82■□□□□ 0.12
SS18-215ENST00000580642 STIM2Q9P246 746 aa15.82■□□□□ 0.12
SS18-215ENST00000580642 DNMT3BQ9UBC3 853 aaKnown RBP15.82■□□□□ 0.12
SS18-215ENST00000580642 OR12D3Q9UGF7 316 aa15.82■□□□□ 0.12
SS18-215ENST00000580642 ZNF510Q9Y2H8 683 aa15.82■□□□□ 0.12
SS18-215ENST00000580642 RAD54BQ9Y620 910 aa15.82■□□□□ 0.12
SS18-215ENST00000580642 PDE4DIPQ5VU43 2346 aa15.82■□□□□ 0.12
SS18-215ENST00000580642 PI4K2BG5E9Z4 385 aa15.81■□□□□ 0.12
SS18-215ENST00000580642 FGF10O15520 208 aaPredicted RBP15.81■□□□□ 0.12
SS18-215ENST00000580642 PAGE1O75459 146 aa15.81■□□□□ 0.12
SS18-215ENST00000580642 TBX18O95935 607 aa15.81■□□□□ 0.12
SS18-215ENST00000580642 HOXC13P31276 330 aa15.81■□□□□ 0.12
SS18-215ENST00000580642 FNTAP49354 379 aa15.81■□□□□ 0.12
SS18-215ENST00000580642 ANKRD20A8PQ5CZ79 823 aa15.81■□□□□ 0.12
SS18-215ENST00000580642 MIB1Q86YT6 1006 aa15.81■□□□□ 0.12
SS18-215ENST00000580642 VN1R2Q8NFZ6 395 aa15.81■□□□□ 0.12
SS18-215ENST00000580642 CSPG4P5Q96PW8 444 aa15.81■□□□□ 0.12
SS18-215ENST00000580642 KCTD15Q96SI1 283 aaPredicted RBP15.81■□□□□ 0.12
SS18-215ENST00000580642 KLF16Q9BXK1 252 aaPredicted RBP15.81■□□□□ 0.12
SS18-215ENST00000580642 PPARGC1AQ9UBK2 798 aaKnown RBP15.81■□□□□ 0.12
SS18-215ENST00000580642 STOML2Q9UJZ1 356 aa15.81■□□□□ 0.12
SS18-215ENST00000580642 NUDT5Q9UKK9 219 aa15.81■□□□□ 0.12
SS18-215ENST00000580642 ARHGAP26Q9UNA1 814 aa15.81■□□□□ 0.12
SS18-215ENST00000580642 ZNF638Q14966 1978 aaKnown RBP15.8■□□□□ 0.12
SS18-215ENST00000580642 MYO16Q9Y6X6 1858 aa15.8■□□□□ 0.12
SS18-215ENST00000580642 APOC4-APOC2K7ER74 178 aa15.8■□□□□ 0.12
SS18-215ENST00000580642 EEF2KO00418 725 aaKnown RBP15.8■□□□□ 0.12
SS18-215ENST00000580642 APOL1O14791 398 aa15.8■□□□□ 0.12
SS18-215ENST00000580642 MSI1O43347 362 aaKnown RBP15.8■□□□□ 0.12
SS18-215ENST00000580642 APOC2P02655 101 aa15.8■□□□□ 0.12
SS18-215ENST00000580642 TUBBP07437 444 aa15.8■□□□□ 0.12
SS18-215ENST00000580642 CD48P09326 243 aa15.8■□□□□ 0.12
SS18-215ENST00000580642 MYL4P12829 197 aa15.8■□□□□ 0.12
SS18-215ENST00000580642 TCF3P15923 654 aa15.8■□□□□ 0.12
SS18-215ENST00000580642 LMNB2Q03252 620 aa15.8■□□□□ 0.12
SS18-215ENST00000580642 HYAL1Q12794 435 aa15.8■□□□□ 0.12
SS18-215ENST00000580642 CA9Q16790 459 aa15.8■□□□□ 0.12
SS18-215ENST00000580642 PPP6R3Q5H9R7 873 aaPredicted RBP15.8■□□□□ 0.12
SS18-215ENST00000580642 PRSS36Q5K4E3 855 aa15.8■□□□□ 0.12
SS18-215ENST00000580642 LRRC31Q6UY01 552 aa15.8■□□□□ 0.12
SS18-215ENST00000580642 MAATS1Q7Z4T9 603 aa15.8■□□□□ 0.12
SS18-215ENST00000580642 HS6ST3Q8IZP7 471 aa15.8■□□□□ 0.12
SS18-215ENST00000580642 SHKBP1Q8TBC3 707 aa15.8■□□□□ 0.12
SS18-215ENST00000580642 SMG7Q92540 1137 aaKnown RBP15.8■□□□□ 0.12
SS18-215ENST00000580642 RNF38Q9H0F5 515 aa15.8■□□□□ 0.12
SS18-215ENST00000580642 CATSPERBQ9H7T0 1116 aa15.8■□□□□ 0.12
SS18-215ENST00000580642 PIDD1Q9HB75 910 aa15.8■□□□□ 0.12
SS18-215ENST00000580642 KLHL11Q9NVR0 708 aa15.8■□□□□ 0.12
SS18-215ENST00000580642 CWC15Q9P013 229 aaKnown RBP15.8■□□□□ 0.12
SS18-215ENST00000580642 A0A1W2PRU2 124 aa15.79■□□□□ 0.12
SS18-215ENST00000580642 C2orf78A6NCI8 922 aa15.79■□□□□ 0.12
SS18-215ENST00000580642 I6L893 689 aaPredicted RBP15.79■□□□□ 0.12
SS18-215ENST00000580642 CST8O60676 142 aa15.79■□□□□ 0.12
SS18-215ENST00000580642 PHF2O75151 1096 aa15.79■□□□□ 0.12
SS18-215ENST00000580642 CSPG5O95196 566 aa15.79■□□□□ 0.12
SS18-215ENST00000580642 MBL2P11226 248 aaPredicted RBP15.79■□□□□ 0.12
SS18-215ENST00000580642 TPI1P60174 286 aa15.79■□□□□ 0.12
SS18-215ENST00000580642 ADAM15Q13444 863 aa15.79■□□□□ 0.12
SS18-215ENST00000580642 DPYSQ14117 519 aa15.79■□□□□ 0.12
SS18-215ENST00000580642 COL19A1Q14993 1142 aa15.79■□□□□ 0.12
SS18-215ENST00000580642 SIX1Q15475 284 aaPredicted RBP15.79■□□□□ 0.12
SS18-215ENST00000580642 C5orf22Q49AR2 442 aa15.79■□□□□ 0.12
SS18-215ENST00000580642 TCEAL5Q5H9L2 206 aa15.79■□□□□ 0.12
SS18-215ENST00000580642 MANEALQ5VSG8 457 aa15.79■□□□□ 0.12
SS18-215ENST00000580642 PRPF38BQ5VTL8 546 aaKnown RBP15.79■□□□□ 0.12
SS18-215ENST00000580642 GPR153Q6NV75 609 aa15.79■□□□□ 0.12
SS18-215ENST00000580642 AADACL2Q6P093 401 aa15.79■□□□□ 0.12
SS18-215ENST00000580642 RFX8Q6ZV50 586 aa15.79■□□□□ 0.12
SS18-215ENST00000580642 SYDE1Q6ZW31 735 aaPredicted RBP15.79■□□□□ 0.12
SS18-215ENST00000580642 GPR149Q86SP6 731 aa15.79■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms