RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 FAM71BQ8TC56 605 aa26.03■■□□□ 1.76
SHMT1-207ENST00000580002 TSC1Q92574 1164 aa26.03■■□□□ 1.76
SHMT1-207ENST00000580002 HAUS1Q96CS2 278 aa26.03■■□□□ 1.76
SHMT1-207ENST00000580002 NACA2Q9H009 215 aa26.03■■□□□ 1.76
SHMT1-207ENST00000580002 KRIT1O00522 736 aa26.02■■□□□ 1.76
SHMT1-207ENST00000580002 SCAMP3O14828 347 aaKnown RBP26.02■■□□□ 1.76
SHMT1-207ENST00000580002 CREB3O43889 395 aa26.02■■□□□ 1.76
SHMT1-207ENST00000580002 PAGE1O75459 146 aa26.02■■□□□ 1.76
SHMT1-207ENST00000580002 PTPN2P17706 415 aa26.02■■□□□ 1.76
SHMT1-207ENST00000580002 CCR1P32246 355 aa26.02■■□□□ 1.76
SHMT1-207ENST00000580002 ZNF572Q7Z3I7 529 aaPredicted RBP26.02■■□□□ 1.76
SHMT1-207ENST00000580002 ZNF276Q8N554 614 aa26.02■■□□□ 1.76
SHMT1-207ENST00000580002 CEP112Q8N8E3 955 aa26.02■■□□□ 1.76
SHMT1-207ENST00000580002 PCDH19Q8TAB3 1148 aa26.02■■□□□ 1.76
SHMT1-207ENST00000580002 HDAC7Q8WUI4 952 aa26.02■■□□□ 1.76
SHMT1-207ENST00000580002 ETNK2Q9NVF9 386 aa26.02■■□□□ 1.76
SHMT1-207ENST00000580002 RNF14Q9UBS8 474 aa26.02■■□□□ 1.76
SHMT1-207ENST00000580002 CTAGE15A4D2H0 777 aa26.02■■□□□ 1.76
SHMT1-207ENST00000580002 HNRNPA1P09651 372 aaKnown RBP eCLIP26.02■■□□□ 1.76
SHMT1-207ENST00000580002 CTAGE8P0CG41 777 aa26.02■■□□□ 1.76
SHMT1-207ENST00000580002 HOXA9P31269 272 aa26.02■■□□□ 1.76
SHMT1-207ENST00000580002 CKAP4Q07065 602 aaKnown RBP26.02■■□□□ 1.76
SHMT1-207ENST00000580002 SCAPQ12770 1279 aa26.02■■□□□ 1.76
SHMT1-207ENST00000580002 ADGRE1Q14246 886 aa26.02■■□□□ 1.76
SHMT1-207ENST00000580002 PABPC1LQ4VXU2 614 aaKnown RBP26.02■■□□□ 1.76
SHMT1-207ENST00000580002 EFHC2Q5JST6 749 aa26.02■■□□□ 1.76
SHMT1-207ENST00000580002 C14orf80Q86SX3 495 aa26.02■■□□□ 1.76
SHMT1-207ENST00000580002 CTAGE6Q86UF2 777 aa26.02■■□□□ 1.76
SHMT1-207ENST00000580002 RFX6Q8HWS3 928 aa26.02■■□□□ 1.76
SHMT1-207ENST00000580002 CTAGE4Q8IX94 777 aa26.02■■□□□ 1.76
SHMT1-207ENST00000580002 PQLC3Q8N755 202 aa26.02■■□□□ 1.76
SHMT1-207ENST00000580002 PRELID2Q8N945 189 aa26.02■■□□□ 1.76
SHMT1-207ENST00000580002 NETO2Q8NC67 525 aa26.02■■□□□ 1.76
SHMT1-207ENST00000580002 MNS1Q8NEH6 495 aa26.02■■□□□ 1.76
SHMT1-207ENST00000580002 C1orf54Q8WWF1 131 aa26.02■■□□□ 1.76
SHMT1-207ENST00000580002 ATG4AQ8WYN0 398 aa26.02■■□□□ 1.76
SHMT1-207ENST00000580002 ZFRQ96KR1 1074 aaKnown RBP26.02■■□□□ 1.76
SHMT1-207ENST00000580002 FAM161BQ96MY7 647 aa26.02■■□□□ 1.76
SHMT1-207ENST00000580002 SLC46A2Q9BY10 475 aa26.02■■□□□ 1.76
SHMT1-207ENST00000580002 SMG9Q9H0W8 520 aaKnown RBP26.02■■□□□ 1.76
SHMT1-207ENST00000580002 IGLV3-27P01718 113 aa26.01■■□□□ 1.75
SHMT1-207ENST00000580002 IRF1P10914 325 aa26.01■■□□□ 1.75
SHMT1-207ENST00000580002 AMPD1P23109 780 aa26.01■■□□□ 1.75
SHMT1-207ENST00000580002 PPP3CCP48454 512 aa26.01■■□□□ 1.75
SHMT1-207ENST00000580002 EPHA5P54756 1037 aa26.01■■□□□ 1.75
SHMT1-207ENST00000580002 PPP2R5DQ14738 602 aa26.01■■□□□ 1.75
SHMT1-207ENST00000580002 PDK2Q15119 407 aa26.01■■□□□ 1.75
SHMT1-207ENST00000580002 ANKRD20A8PQ5CZ79 823 aa26.01■■□□□ 1.75
SHMT1-207ENST00000580002 NPNTQ6UXI9 565 aa26.01■■□□□ 1.75
SHMT1-207ENST00000580002 CSPG4P5Q96PW8 444 aa26.01■■□□□ 1.75
SHMT1-207ENST00000580002 RNF157Q96PX1 679 aa26.01■■□□□ 1.75
SHMT1-207ENST00000580002 KLF16Q9BXK1 252 aaPredicted RBP26.01■■□□□ 1.75
SHMT1-207ENST00000580002 EPC1Q9H2F5 836 aa26.01■■□□□ 1.75
SHMT1-207ENST00000580002 NSUN3Q9H649 340 aaKnown RBP26.01■■□□□ 1.75
SHMT1-207ENST00000580002 SLTMQ9NWH9 1034 aaKnown RBP eCLIP26.01■■□□□ 1.75
SHMT1-207ENST00000580002 ZDHHC7Q9NXF8 308 aa26.01■■□□□ 1.75
SHMT1-207ENST00000580002 OBSL1O75147 1896 aa26.01■■□□□ 1.75
SHMT1-207ENST00000580002 GOLGA6L7A0A1B0GV03 622 aa26■■□□□ 1.75
SHMT1-207ENST00000580002 CST8O60676 142 aa26■■□□□ 1.75
SHMT1-207ENST00000580002 HDCP19113 662 aa26■■□□□ 1.75
SHMT1-207ENST00000580002 COPS2P61201 443 aa26■■□□□ 1.75
SHMT1-207ENST00000580002 SEMA3BQ13214 749 aa26■■□□□ 1.75
SHMT1-207ENST00000580002 TEAD2Q15562 447 aa26■■□□□ 1.75
SHMT1-207ENST00000580002 BRMS1LQ5PSV4 323 aa26■■□□□ 1.75
SHMT1-207ENST00000580002 PIK3R6Q5UE93 754 aa26■■□□□ 1.75
SHMT1-207ENST00000580002 KLHL7Q8IXQ5 586 aa26■■□□□ 1.75
SHMT1-207ENST00000580002 ADAMTS19Q8TE59 1207 aa26■■□□□ 1.75
SHMT1-207ENST00000580002 MYEOVQ96EZ4 313 aa26■■□□□ 1.75
SHMT1-207ENST00000580002 LRCH3Q96II8 777 aa26■■□□□ 1.75
SHMT1-207ENST00000580002 HS3ST4Q9Y661 456 aa26■■□□□ 1.75
SHMT1-207ENST00000580002 SPTBN5Q9NRC6 3674 aaKnown RBP26■■□□□ 1.75
SHMT1-207ENST00000580002 KLKB1P03952 638 aa26■■□□□ 1.75
SHMT1-207ENST00000580002 MBL2P11226 248 aaPredicted RBP26■■□□□ 1.75
SHMT1-207ENST00000580002 TUBP50607 506 aa26■■□□□ 1.75
SHMT1-207ENST00000580002 PPP2R5EQ16537 467 aa26■■□□□ 1.75
SHMT1-207ENST00000580002 ARL13BQ3SXY8 428 aa26■■□□□ 1.75
SHMT1-207ENST00000580002 FAM182AQ5T1J6 154 aa26■■□□□ 1.75
SHMT1-207ENST00000580002 KLHDC10Q6PID8 442 aa26■■□□□ 1.75
SHMT1-207ENST00000580002 PDZD4Q76G19 769 aaPredicted RBP26■■□□□ 1.75
SHMT1-207ENST00000580002 RTL10Q7L3V2 364 aa26■■□□□ 1.75
SHMT1-207ENST00000580002 MRPS31Q92665 395 aaKnown RBP26■■□□□ 1.75
SHMT1-207ENST00000580002 DDX47Q9H0S4 455 aaKnown RBP26■■□□□ 1.75
SHMT1-207ENST00000580002 OR12D3Q9UGF7 316 aa26■■□□□ 1.75
SHMT1-207ENST00000580002 XYLBO75191 536 aa25.99■■□□□ 1.75
SHMT1-207ENST00000580002 PTPN7P35236 360 aa25.99■■□□□ 1.75
SHMT1-207ENST00000580002 PRSS36Q5K4E3 855 aa25.99■■□□□ 1.75
SHMT1-207ENST00000580002 RARS2Q5T160 578 aaKnown RBP25.99■■□□□ 1.75
SHMT1-207ENST00000580002 B4GALNT4Q76KP1 1039 aa25.99■■□□□ 1.75
SHMT1-207ENST00000580002 TTC16Q8NEE8 873 aa25.99■■□□□ 1.75
SHMT1-207ENST00000580002 ITFG1Q8TB96 612 aa25.99■■□□□ 1.75
SHMT1-207ENST00000580002 ING5Q8WYH8 240 aa25.99■■□□□ 1.75
SHMT1-207ENST00000580002 SMG7Q92540 1137 aaKnown RBP25.99■■□□□ 1.75
SHMT1-207ENST00000580002 FAF2Q96CS3 445 aa25.99■■□□□ 1.75
SHMT1-207ENST00000580002 HINFPQ9BQA5 517 aa25.99■■□□□ 1.75
SHMT1-207ENST00000580002 C5orf42Q9H799 3197 aa25.99■■□□□ 1.75
SHMT1-207ENST00000580002 XIRP2A4UGR9 3374 aa25.98■■□□□ 1.75
SHMT1-207ENST00000580002 STC2O76061 302 aa25.98■■□□□ 1.75
SHMT1-207ENST00000580002 MAP3K6O95382 1288 aa25.98■■□□□ 1.75
SHMT1-207ENST00000580002 OLFM2O95897 454 aa25.98■■□□□ 1.75
SHMT1-207ENST00000580002 SRGAP2BP0DMP2 458 aa25.98■■□□□ 1.75
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms