RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 GOLPH3Q9H4A6 298 aa9.66□□□□□ -0.86
VPS35-211ENST00000569950 ZFP14Q9HCL3 533 aa9.66□□□□□ -0.86
VPS35-211ENST00000569950 DDIT4Q9NX09 232 aa9.66□□□□□ -0.86
VPS35-211ENST00000569950 RRN3Q9NYV6 651 aa9.66□□□□□ -0.86
VPS35-211ENST00000569950 EIF2AK3Q9NZJ5 1116 aaKnown RBP9.66□□□□□ -0.86
VPS35-211ENST00000569950 UVRAGQ9P2Y5 699 aa9.66□□□□□ -0.86
VPS35-211ENST00000569950 ZNF212Q9UDV6 495 aa9.66□□□□□ -0.86
VPS35-211ENST00000569950 NR2E1Q9Y466 385 aa9.66□□□□□ -0.86
VPS35-211ENST00000569950 WNT6Q9Y6F9 365 aa9.66□□□□□ -0.86
VPS35-211ENST00000569950 SCINQ9Y6U3 715 aa9.66□□□□□ -0.86
VPS35-211ENST00000569950 ZDBF2Q9HCK1 2354 aa9.66□□□□□ -0.86
VPS35-211ENST00000569950 GOLGA6L7A0A1B0GV03 622 aa9.65□□□□□ -0.86
VPS35-211ENST00000569950 USP27XA6NNY8 438 aa9.65□□□□□ -0.86
VPS35-211ENST00000569950 FAM72CH0Y354 149 aa9.65□□□□□ -0.86
VPS35-211ENST00000569950 CAPN9O14815 690 aa9.65□□□□□ -0.86
VPS35-211ENST00000569950 BUB1BO60566 1050 aaPredicted RBP9.65□□□□□ -0.86
VPS35-211ENST00000569950 PAGE1O75459 146 aa9.65□□□□□ -0.86
VPS35-211ENST00000569950 PROSCO94903 275 aa9.65□□□□□ -0.86
VPS35-211ENST00000569950 ARSAP15289 507 aa9.65□□□□□ -0.86
VPS35-211ENST00000569950 PSMC3P17980 439 aa9.65□□□□□ -0.86
VPS35-211ENST00000569950 CORO1AP31146 461 aaKnown RBP9.65□□□□□ -0.86
VPS35-211ENST00000569950 SDC4P31431 198 aa9.65□□□□□ -0.86
VPS35-211ENST00000569950 COG7P83436 770 aa9.65□□□□□ -0.86
VPS35-211ENST00000569950 TNK2Q07912 1038 aa9.65□□□□□ -0.86
VPS35-211ENST00000569950 MESP2Q0VG99 397 aa9.65□□□□□ -0.86
VPS35-211ENST00000569950 SCAPQ12770 1279 aa9.65□□□□□ -0.86
VPS35-211ENST00000569950 NME3Q13232 169 aa9.65□□□□□ -0.86
VPS35-211ENST00000569950 CA9Q16790 459 aa9.65□□□□□ -0.86
VPS35-211ENST00000569950 CDO1Q16878 200 aa9.65□□□□□ -0.86
VPS35-211ENST00000569950 C5orf22Q49AR2 442 aa9.65□□□□□ -0.86
VPS35-211ENST00000569950 TJAP1Q5JTD0 557 aa9.65□□□□□ -0.86
VPS35-211ENST00000569950 FAM72AQ5TYM5 149 aa9.65□□□□□ -0.86
VPS35-211ENST00000569950 NAIF1Q69YI7 327 aaPredicted RBP9.65□□□□□ -0.86
VPS35-211ENST00000569950 FAM72DQ6L9T8 149 aa9.65□□□□□ -0.86
VPS35-211ENST00000569950 DCUN1D2Q6PH85 259 aa9.65□□□□□ -0.86
VPS35-211ENST00000569950 RHBDF2Q6PJF5 856 aa9.65□□□□□ -0.86
VPS35-211ENST00000569950 MTSS1LQ765P7 747 aa9.65□□□□□ -0.86
VPS35-211ENST00000569950 SLFN11Q7Z7L1 901 aa9.65□□□□□ -0.86
VPS35-211ENST00000569950 C14orf80Q86SX3 495 aa9.65□□□□□ -0.86
VPS35-211ENST00000569950 FAM72BQ86X60 149 aa9.65□□□□□ -0.86
VPS35-211ENST00000569950 FAM131BQ86XD5 332 aa9.65□□□□□ -0.86
VPS35-211ENST00000569950 RNF135Q8IUD6 432 aa9.65□□□□□ -0.86
VPS35-211ENST00000569950 DENND1CQ8IV53 801 aa9.65□□□□□ -0.86
VPS35-211ENST00000569950 ADGRG2Q8IZP9 1017 aa9.65□□□□□ -0.86
VPS35-211ENST00000569950 PLCD3Q8N3E9 789 aa9.65□□□□□ -0.86
VPS35-211ENST00000569950 TPCN2Q8NHX9 752 aa9.65□□□□□ -0.86
VPS35-211ENST00000569950 OSCP1Q8WVF1 389 aa9.65□□□□□ -0.86
VPS35-211ENST00000569950 CD101Q93033 1021 aa9.65□□□□□ -0.86
VPS35-211ENST00000569950 AZIN2Q96A70 460 aa9.65□□□□□ -0.86
VPS35-211ENST00000569950 NTAN1Q96AB6 310 aa9.65□□□□□ -0.86
VPS35-211ENST00000569950 ACSF2Q96CM8 615 aaPredicted RBP9.65□□□□□ -0.86
VPS35-211ENST00000569950 PRICKLE1Q96MT3 831 aaPredicted RBP9.65□□□□□ -0.86
VPS35-211ENST00000569950 FAM204AQ9H8W3 233 aa9.65□□□□□ -0.86
VPS35-211ENST00000569950 MRPL47Q9HD33 250 aaKnown RBP9.65□□□□□ -0.86
VPS35-211ENST00000569950 CTTNBP2NLQ9P2B4 639 aa9.65□□□□□ -0.86
VPS35-211ENST00000569950 IGSF9Q9P2J2 1179 aa9.65□□□□□ -0.86
VPS35-211ENST00000569950 ANAPC7Q9UJX3 599 aa9.65□□□□□ -0.86
VPS35-211ENST00000569950 STAP1Q9ULZ2 295 aa9.65□□□□□ -0.86
VPS35-211ENST00000569950 FAM50BQ9Y247 325 aa9.65□□□□□ -0.86
VPS35-211ENST00000569950 PPP2R2CQ9Y2T4 447 aa9.65□□□□□ -0.86
VPS35-211ENST00000569950 SNX10Q9Y5X0 201 aa9.65□□□□□ -0.86
VPS35-211ENST00000569950 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP9.65□□□□□ -0.86
VPS35-211ENST00000569950 CAPN6Q9Y6Q1 641 aa9.65□□□□□ -0.86
VPS35-211ENST00000569950 ATG2BQ96BY7 2078 aa9.65□□□□□ -0.87
VPS35-211ENST00000569950 NYNRINQ9P2P1 1898 aaKnown RBP9.64□□□□□ -0.87
VPS35-211ENST00000569950 SYNJ2BP-COX16A0A087WUM0 186 aa9.64□□□□□ -0.87
VPS35-211ENST00000569950 GRID2IPA4D2P6 1211 aa9.64□□□□□ -0.87
VPS35-211ENST00000569950 GOLGA6L6A8MZA4 724 aa9.64□□□□□ -0.87
VPS35-211ENST00000569950 CHADO15335 359 aa9.64□□□□□ -0.87
VPS35-211ENST00000569950 ACSL4O60488 711 aa9.64□□□□□ -0.87
VPS35-211ENST00000569950 SLC34A2O95436 690 aa9.64□□□□□ -0.87
VPS35-211ENST00000569950 CYP17A1P05093 508 aa9.64□□□□□ -0.87
VPS35-211ENST00000569950 PSMA2P25787 234 aa9.64□□□□□ -0.87
VPS35-211ENST00000569950 MIPP30301 263 aa9.64□□□□□ -0.87
VPS35-211ENST00000569950 MAN1A1P33908 653 aa9.64□□□□□ -0.87
VPS35-211ENST00000569950 RDXP35241 583 aaKnown RBP9.64□□□□□ -0.87
VPS35-211ENST00000569950 ADRA1BP35368 520 aa9.64□□□□□ -0.87
VPS35-211ENST00000569950 GGCXP38435 758 aa9.64□□□□□ -0.87
VPS35-211ENST00000569950 ARSEP51690 589 aa9.64□□□□□ -0.87
VPS35-211ENST00000569950 VCPP55072 806 aaKnown RBP9.64□□□□□ -0.87
VPS35-211ENST00000569950 DEUP1Q05D60 604 aa9.64□□□□□ -0.87
VPS35-211ENST00000569950 SPA17Q15506 151 aa9.64□□□□□ -0.87
VPS35-211ENST00000569950 MS4A13Q5J8X5 152 aa9.64□□□□□ -0.87
VPS35-211ENST00000569950 FYB2Q5VWT5 728 aa9.64□□□□□ -0.87
VPS35-211ENST00000569950 ANKS1BQ7Z6G8 1248 aa9.64□□□□□ -0.87
VPS35-211ENST00000569950 TADA2BQ86TJ2 420 aa9.64□□□□□ -0.87
VPS35-211ENST00000569950 DDX42Q86XP3 938 aaKnown RBP eCLIP9.64□□□□□ -0.87
VPS35-211ENST00000569950 TMEM25Q86YD3 366 aa9.64□□□□□ -0.87
VPS35-211ENST00000569950 ZNF687Q8N1G0 1237 aa9.64□□□□□ -0.87
VPS35-211ENST00000569950 PYROXD2Q8N2H3 581 aa9.64□□□□□ -0.87
VPS35-211ENST00000569950 SPDYE1Q8NFV5 336 aaPredicted RBP9.64□□□□□ -0.87
VPS35-211ENST00000569950 FAM71BQ8TC56 605 aa9.64□□□□□ -0.87
VPS35-211ENST00000569950 DEPDC1BQ8WUY9 529 aa9.64□□□□□ -0.87
VPS35-211ENST00000569950 GOLGA1Q92805 767 aa9.64□□□□□ -0.87
VPS35-211ENST00000569950 NXPE3Q969Y0 559 aa9.64□□□□□ -0.87
VPS35-211ENST00000569950 E2F7Q96AV8 911 aa9.64□□□□□ -0.87
VPS35-211ENST00000569950 SLC2A4RGQ9NR83 387 aa9.64□□□□□ -0.87
VPS35-211ENST00000569950 SLTMQ9NWH9 1034 aaKnown RBP eCLIP9.64□□□□□ -0.87
VPS35-211ENST00000569950 COX16Q9P0S2 106 aa9.64□□□□□ -0.87
VPS35-211ENST00000569950 CLEC4EQ9ULY5 219 aa9.64□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms