RNA–Protein interactions for RNA: ENST00000567992.1

CLK3-220, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 603 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-220ENST00000567992 TCRBV5S1A1TA0A578 114 aa10.19□□□□□ -0.78
CLK3-220ENST00000567992 KCNU1A8MYU2 1149 aa10.19□□□□□ -0.78
CLK3-220ENST00000567992 H0Y858 1186 aa10.19□□□□□ -0.78
CLK3-220ENST00000567992 GOLGA8SH3BPF8 625 aa10.19□□□□□ -0.78
CLK3-220ENST00000567992 I6L893 689 aaPredicted RBP10.19□□□□□ -0.78
CLK3-220ENST00000567992 ACSL4O60488 711 aa10.19□□□□□ -0.78
CLK3-220ENST00000567992 KAT7O95251 611 aa10.19□□□□□ -0.78
CLK3-220ENST00000567992 PAPSS2O95340 614 aaPredicted RBP10.19□□□□□ -0.78
CLK3-220ENST00000567992 GJB6O95452 261 aa10.19□□□□□ -0.78
CLK3-220ENST00000567992 CISD3P0C7P0 127 aa10.19□□□□□ -0.78
CLK3-220ENST00000567992 HOXD9P28356 352 aaPredicted RBP10.19□□□□□ -0.78
CLK3-220ENST00000567992 HOXC13P31276 330 aa10.19□□□□□ -0.78
CLK3-220ENST00000567992 NOS2P35228 1153 aa10.19□□□□□ -0.78
CLK3-220ENST00000567992 CHKAP35790 457 aa10.19□□□□□ -0.78
CLK3-220ENST00000567992 MATKP42679 507 aa10.19□□□□□ -0.78
CLK3-220ENST00000567992 NSFP46459 744 aaKnown RBP10.19□□□□□ -0.78
CLK3-220ENST00000567992 HARS2P49590 506 aaKnown RBP10.19□□□□□ -0.78
CLK3-220ENST00000567992 PTPN5P54829 565 aa10.19□□□□□ -0.78
CLK3-220ENST00000567992 SATB1Q01826 763 aa10.19□□□□□ -0.78
CLK3-220ENST00000567992 ZC3H12AQ5D1E8 599 aaKnown RBP10.19□□□□□ -0.78
CLK3-220ENST00000567992 ADGRF1Q5T601 910 aa10.19□□□□□ -0.78
CLK3-220ENST00000567992 FAM102AQ5T9C2 384 aaPredicted RBP10.19□□□□□ -0.78
CLK3-220ENST00000567992 SFMBT2Q5VUG0 894 aa10.19□□□□□ -0.78
CLK3-220ENST00000567992 ARCQ7LC44 396 aa10.19□□□□□ -0.78
CLK3-220ENST00000567992 GAS2L3Q86XJ1 694 aa10.19□□□□□ -0.78
CLK3-220ENST00000567992 SPEM1Q8N4L4 309 aa10.19□□□□□ -0.78
CLK3-220ENST00000567992 MSANTD4Q8NCY6 345 aa10.19□□□□□ -0.78
CLK3-220ENST00000567992 BHMTQ93088 406 aa10.19□□□□□ -0.78
CLK3-220ENST00000567992 PNKPQ96T60 521 aa10.19□□□□□ -0.78
CLK3-220ENST00000567992 RBSNQ9H1K0 784 aa10.19□□□□□ -0.78
CLK3-220ENST00000567992 HAUS4Q9H6D7 363 aa10.19□□□□□ -0.78
CLK3-220ENST00000567992 FAM204AQ9H8W3 233 aa10.19□□□□□ -0.78
CLK3-220ENST00000567992 ANLNQ9NQW6 1124 aa10.19□□□□□ -0.78
CLK3-220ENST00000567992 ARHGEF4Q9NR80 690 aa10.19□□□□□ -0.78
CLK3-220ENST00000567992 METTL5Q9NRN9 209 aaKnown RBP10.19□□□□□ -0.78
CLK3-220ENST00000567992 PLK2Q9NYY3 685 aa10.19□□□□□ -0.78
CLK3-220ENST00000567992 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP10.19□□□□□ -0.78
CLK3-220ENST00000567992 WDR35Q9P2L0 1181 aa10.19□□□□□ -0.78
CLK3-220ENST00000567992 CAPN11Q9UMQ6 739 aa10.19□□□□□ -0.78
CLK3-220ENST00000567992 EML5Q05BV3 1969 aa10.18□□□□□ -0.78
CLK3-220ENST00000567992 PALM2-AKAP2B1ALY0 433 aaPredicted RBP10.18□□□□□ -0.78
CLK3-220ENST00000567992 CHURC1-FNTBB4DL54 471 aa10.18□□□□□ -0.78
CLK3-220ENST00000567992 K7ESF4 209 aa10.18□□□□□ -0.78
CLK3-220ENST00000567992 DDX3XO00571 662 aaKnown RBP eCLIP10.18□□□□□ -0.78
CLK3-220ENST00000567992 CCDC172P0C7W6 258 aa10.18□□□□□ -0.78
CLK3-220ENST00000567992 SKILP12757 684 aa10.18□□□□□ -0.78
CLK3-220ENST00000567992 GRIA2P42262 883 aa10.18□□□□□ -0.78
CLK3-220ENST00000567992 KIR2DL1P43626 348 aaPredicted RBP10.18□□□□□ -0.78
CLK3-220ENST00000567992 ZBED6P86452 979 aa10.18□□□□□ -0.78
CLK3-220ENST00000567992 CDK17Q00537 523 aa10.18□□□□□ -0.78
CLK3-220ENST00000567992 NHLH1Q02575 133 aa10.18□□□□□ -0.78
CLK3-220ENST00000567992 FBXO43Q4G163 708 aa10.18□□□□□ -0.78
CLK3-220ENST00000567992 RAB6CQ53S08 254 aa10.18□□□□□ -0.78
CLK3-220ENST00000567992 PPP1R15BQ5SWA1 713 aa10.18□□□□□ -0.78
CLK3-220ENST00000567992 RFWD3Q6PCD5 774 aa10.18□□□□□ -0.78
CLK3-220ENST00000567992 TSSK4Q6SA08 328 aa10.18□□□□□ -0.78
CLK3-220ENST00000567992 SARM1Q6SZW1 724 aa10.18□□□□□ -0.78
CLK3-220ENST00000567992 PHLDB2Q86SQ0 1253 aa10.18□□□□□ -0.78
CLK3-220ENST00000567992 VSTM4Q8IW00 320 aa10.18□□□□□ -0.78
CLK3-220ENST00000567992 UNC45BQ8IWX7 931 aa10.18□□□□□ -0.78
CLK3-220ENST00000567992 EMC1Q8N766 993 aa10.18□□□□□ -0.78
CLK3-220ENST00000567992 TERB1Q8NA31 727 aa10.18□□□□□ -0.78
CLK3-220ENST00000567992 JOSD2Q8TAC2 188 aa10.18□□□□□ -0.78
CLK3-220ENST00000567992 USP33Q8TEY7 942 aa10.18□□□□□ -0.78
CLK3-220ENST00000567992 SYN2Q92777 582 aaPredicted RBP10.18□□□□□ -0.78
CLK3-220ENST00000567992 NELL1Q92832 810 aa10.18□□□□□ -0.78
CLK3-220ENST00000567992 IQCDQ96DY2 449 aa10.18□□□□□ -0.78
CLK3-220ENST00000567992 PGAP3Q96FM1 320 aaPredicted RBP10.18□□□□□ -0.78
CLK3-220ENST00000567992 PRMT1Q99873 361 aaKnown RBP10.18□□□□□ -0.78
CLK3-220ENST00000567992 RAB6CQ9H0N0 254 aa10.18□□□□□ -0.78
CLK3-220ENST00000567992 NUCKS1Q9H1E3 243 aaKnown RBP10.18□□□□□ -0.78
CLK3-220ENST00000567992 PIGVQ9NUD9 493 aa10.18□□□□□ -0.78
CLK3-220ENST00000567992 SEPT11Q9NVA2 429 aaKnown RBP10.18□□□□□ -0.78
CLK3-220ENST00000567992 DNAJC17Q9NVM6 304 aaKnown RBP10.18□□□□□ -0.78
CLK3-220ENST00000567992 POLR3BQ9NW08 1133 aaPredicted RBP10.18□□□□□ -0.78
CLK3-220ENST00000567992 DDIT4Q9NX09 232 aa10.18□□□□□ -0.78
CLK3-220ENST00000567992 ADAM22Q9P0K1 906 aa10.18□□□□□ -0.78
CLK3-220ENST00000567992 DEC1Q9P2X7 70 aa10.18□□□□□ -0.78
CLK3-220ENST00000567992 FBXO4Q9UKT5 387 aa10.18□□□□□ -0.78
CLK3-220ENST00000567992 SYNJ2BP-COX16A0A087WUM0 186 aa10.17□□□□□ -0.78
CLK3-220ENST00000567992 C2CD4BA6NLJ0 364 aa10.17□□□□□ -0.78
CLK3-220ENST00000567992 PRRT4C9JH25 899 aa10.17□□□□□ -0.78
CLK3-220ENST00000567992 M0QYT0 321 aa10.17□□□□□ -0.78
CLK3-220ENST00000567992 CBFA2T2O43439 604 aa10.17□□□□□ -0.78
CLK3-220ENST00000567992 TSPAN3O60637 253 aa10.17□□□□□ -0.78
CLK3-220ENST00000567992 MOCS2O96007 188 aaPredicted RBP10.17□□□□□ -0.78
CLK3-220ENST00000567992 APODP05090 189 aa10.17□□□□□ -0.78
CLK3-220ENST00000567992 CALB1P05937 261 aa10.17□□□□□ -0.78
CLK3-220ENST00000567992 PLEKP08567 350 aaPredicted RBP10.17□□□□□ -0.78
CLK3-220ENST00000567992 SP9P0CG40 484 aa10.17□□□□□ -0.78
CLK3-220ENST00000567992 CASP14P31944 242 aa10.17□□□□□ -0.78
CLK3-220ENST00000567992 SLC11A2P49281 568 aa10.17□□□□□ -0.78
CLK3-220ENST00000567992 CXCR3P49682 368 aa10.17□□□□□ -0.78
CLK3-220ENST00000567992 SULT1E1P49888 294 aa10.17□□□□□ -0.78
CLK3-220ENST00000567992 CCR3P51677 355 aa10.17□□□□□ -0.78
CLK3-220ENST00000567992 ATXN1P54253 815 aaKnown RBP10.17□□□□□ -0.78
CLK3-220ENST00000567992 SEC13P55735 322 aa10.17□□□□□ -0.78
CLK3-220ENST00000567992 RNASE9P60153 205 aaKnown RBP10.17□□□□□ -0.78
CLK3-220ENST00000567992 KLHL30Q0D2K2 578 aa10.17□□□□□ -0.78
CLK3-220ENST00000567992 PPP2R5DQ14738 602 aa10.17□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms