RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 SLC2A3P11169 496 aa31.67■■■□□ 2.66
CTCF-203ENST00000566078 CYP1B1Q16678 543 aa31.67■■■□□ 2.66
CTCF-203ENST00000566078 C8orf74Q6P047 294 aa31.67■■■□□ 2.66
CTCF-203ENST00000566078 KLHDC10Q6PID8 442 aa31.67■■■□□ 2.66
CTCF-203ENST00000566078 C12orf50Q8NA57 414 aaPredicted RBP31.67■■■□□ 2.66
CTCF-203ENST00000566078 ATG4AQ8WYN0 398 aa31.67■■■□□ 2.66
CTCF-203ENST00000566078 HAUS1Q96CS2 278 aa31.67■■■□□ 2.66
CTCF-203ENST00000566078 CSPG4P5Q96PW8 444 aa31.67■■■□□ 2.66
CTCF-203ENST00000566078 RCOR3Q9P2K3 495 aaPredicted RBP31.67■■■□□ 2.66
CTCF-203ENST00000566078 SNX10Q9Y5X0 201 aa31.67■■■□□ 2.66
CTCF-203ENST00000566078 C2orf16Q68DN1 1984 aa31.67■■■□□ 2.66
CTCF-203ENST00000566078 DOCK4Q8N1I0 1966 aa31.67■■■□□ 2.66
CTCF-203ENST00000566078 CDH23Q9H251 3354 aa31.67■■■□□ 2.66
CTCF-203ENST00000566078 KCNU1A8MYU2 1149 aa31.67■■■□□ 2.66
CTCF-203ENST00000566078 OAS1P00973 400 aaKnown RBP31.67■■■□□ 2.66
CTCF-203ENST00000566078 APOEP02649 317 aa31.67■■■□□ 2.66
CTCF-203ENST00000566078 RHOXF2BP0C7M4 288 aa31.67■■■□□ 2.66
CTCF-203ENST00000566078 HOXA9P31269 272 aa31.67■■■□□ 2.66
CTCF-203ENST00000566078 TFDP2Q14188 446 aa31.67■■■□□ 2.66
CTCF-203ENST00000566078 PCDH19Q8TAB3 1148 aa31.67■■■□□ 2.66
CTCF-203ENST00000566078 MAGOHBQ96A72 148 aaKnown RBP31.67■■■□□ 2.66
CTCF-203ENST00000566078 RHOXF2Q9BQY4 288 aa31.67■■■□□ 2.66
CTCF-203ENST00000566078 PRO3102Q9H379 93 aa31.67■■■□□ 2.66
CTCF-203ENST00000566078 TRPC7Q9HCX4 862 aa31.67■■■□□ 2.66
CTCF-203ENST00000566078 DPP7Q9UHL4 492 aa31.67■■■□□ 2.66
CTCF-203ENST00000566078 SPDYE4A6NLX3 237 aa31.66■■■□□ 2.66
CTCF-203ENST00000566078 FAM72CH0Y354 149 aa31.66■■■□□ 2.66
CTCF-203ENST00000566078 EEF2KO00418 725 aaKnown RBP31.66■■■□□ 2.66
CTCF-203ENST00000566078 PAGE1O75459 146 aa31.66■■■□□ 2.66
CTCF-203ENST00000566078 CHRNA3P32297 505 aa31.66■■■□□ 2.66
CTCF-203ENST00000566078 NRIP1P48552 1158 aa31.66■■■□□ 2.66
CTCF-203ENST00000566078 ELF2Q15723 593 aa31.66■■■□□ 2.66
CTCF-203ENST00000566078 DUSP6Q16828 381 aa31.66■■■□□ 2.66
CTCF-203ENST00000566078 FAM72AQ5TYM5 149 aa31.66■■■□□ 2.66
CTCF-203ENST00000566078 FAM72DQ6L9T8 149 aa31.66■■■□□ 2.66
CTCF-203ENST00000566078 FAM72BQ86X60 149 aa31.66■■■□□ 2.66
CTCF-203ENST00000566078 HAPLN3Q96S86 360 aa31.66■■■□□ 2.66
CTCF-203ENST00000566078 FAM118BQ9BPY3 351 aa31.66■■■□□ 2.66
CTCF-203ENST00000566078 DCLK3Q9C098 648 aa31.66■■■□□ 2.66
CTCF-203ENST00000566078 SLITRK6Q9H5Y7 841 aa31.66■■■□□ 2.66
CTCF-203ENST00000566078 HCFC1R1Q9NWW0 138 aa31.66■■■□□ 2.66
CTCF-203ENST00000566078 HBS1LQ9Y450 684 aaKnown RBP31.66■■■□□ 2.66
CTCF-203ENST00000566078 IGLV3-27P01718 113 aa31.65■■■□□ 2.66
CTCF-203ENST00000566078 HNRNPA1P09651 372 aaKnown RBP eCLIP31.65■■■□□ 2.66
CTCF-203ENST00000566078 MYL4P12829 197 aa31.65■■■□□ 2.66
CTCF-203ENST00000566078 GGCXP38435 758 aa31.65■■■□□ 2.66
CTCF-203ENST00000566078 KPNA1P52294 538 aaPredicted RBP31.65■■■□□ 2.66
CTCF-203ENST00000566078 MRPS25P82663 173 aaKnown RBP31.65■■■□□ 2.66
CTCF-203ENST00000566078 SEMA3BQ13214 749 aa31.65■■■□□ 2.66
CTCF-203ENST00000566078 CCDC70Q6NSX1 233 aa31.65■■■□□ 2.66
CTCF-203ENST00000566078 ELMSAN1Q6PJG2 1045 aa31.65■■■□□ 2.66
CTCF-203ENST00000566078 GAREM2Q75VX8 874 aa31.65■■■□□ 2.66
CTCF-203ENST00000566078 PQLC3Q8N755 202 aa31.65■■■□□ 2.66
CTCF-203ENST00000566078 GCNAQ96QF7 691 aa31.65■■■□□ 2.66
CTCF-203ENST00000566078 LRRC1Q9BTT6 524 aa31.65■■■□□ 2.66
CTCF-203ENST00000566078 OR12D3Q9UGF7 316 aa31.65■■■□□ 2.66
CTCF-203ENST00000566078 APOL1O14791 398 aa31.64■■■□□ 2.66
CTCF-203ENST00000566078 CDC25CP30307 473 aa31.64■■■□□ 2.66
CTCF-203ENST00000566078 CYP4F8P98187 520 aa31.64■■■□□ 2.66
CTCF-203ENST00000566078 RING1Q06587 406 aa31.64■■■□□ 2.66
CTCF-203ENST00000566078 SNX1Q13596 522 aa31.64■■■□□ 2.66
CTCF-203ENST00000566078 SIK2Q9H0K1 926 aa31.64■■■□□ 2.66
CTCF-203ENST00000566078 OSBPL2Q9H1P3 480 aa31.64■■■□□ 2.66
CTCF-203ENST00000566078 EPC1Q9H2F5 836 aa31.64■■■□□ 2.66
CTCF-203ENST00000566078 LRRC19Q9H756 370 aa31.64■■■□□ 2.66
CTCF-203ENST00000566078 HOMER3Q9NSC5 361 aa31.64■■■□□ 2.66
CTCF-203ENST00000566078 ZNF697Q5TEC3 545 aa31.64■■■□□ 2.65
CTCF-203ENST00000566078 SLC9A4Q6AI14 798 aa31.64■■■□□ 2.65
CTCF-203ENST00000566078 TTC27Q6P3X3 843 aa31.64■■■□□ 2.65
CTCF-203ENST00000566078 ATP6V0D2Q8N8Y2 350 aa31.64■■■□□ 2.65
CTCF-203ENST00000566078 MRPS31Q92665 395 aaKnown RBP31.64■■■□□ 2.65
CTCF-203ENST00000566078 MRPL38Q96DV4 380 aaKnown RBP31.64■■■□□ 2.65
CTCF-203ENST00000566078 EPAS1Q99814 870 aa31.64■■■□□ 2.65
CTCF-203ENST00000566078 ZDHHC7Q9NXF8 308 aa31.64■■■□□ 2.65
CTCF-203ENST00000566078 AMACRQ9UHK6 382 aa31.64■■■□□ 2.65
CTCF-203ENST00000566078 XPO7Q9UIA9 1087 aaKnown RBP31.64■■■□□ 2.65
CTCF-203ENST00000566078 APOC4-APOC2K7ER74 178 aa31.63■■■□□ 2.65
CTCF-203ENST00000566078 XYLBO75191 536 aa31.63■■■□□ 2.65
CTCF-203ENST00000566078 APOC2P02655 101 aa31.63■■■□□ 2.65
CTCF-203ENST00000566078 COILP38432 576 aaPredicted RBP31.63■■■□□ 2.65
CTCF-203ENST00000566078 TPI1P60174 286 aa31.63■■■□□ 2.65
CTCF-203ENST00000566078 RBM10P98175 930 aaKnown RBP31.63■■■□□ 2.65
CTCF-203ENST00000566078 CCDC137Q6PK04 289 aaKnown RBP31.63■■■□□ 2.65
CTCF-203ENST00000566078 RFX8Q6ZV50 586 aa31.63■■■□□ 2.65
CTCF-203ENST00000566078 RNF38Q9H0F5 515 aa31.63■■■□□ 2.65
CTCF-203ENST00000566078 ATXN3LQ9H3M9 355 aa31.63■■■□□ 2.65
CTCF-203ENST00000566078 ARHGEF4Q9NR80 690 aa31.63■■■□□ 2.65
CTCF-203ENST00000566078 RAD51CO43502 376 aa31.62■■■□□ 2.65
CTCF-203ENST00000566078 PTPN2P17706 415 aa31.62■■■□□ 2.65
CTCF-203ENST00000566078 AMPD1P23109 780 aa31.62■■■□□ 2.65
CTCF-203ENST00000566078 FNTAP49354 379 aa31.62■■■□□ 2.65
CTCF-203ENST00000566078 ZNF135P52742 658 aaPredicted RBP31.62■■■□□ 2.65
CTCF-203ENST00000566078 CCNG2Q16589 344 aa31.62■■■□□ 2.65
CTCF-203ENST00000566078 TXNDC8Q6A555 127 aa31.62■■■□□ 2.65
CTCF-203ENST00000566078 PLD5Q8N7P1 536 aa31.62■■■□□ 2.65
CTCF-203ENST00000566078 TTC13Q8NBP0 860 aa31.62■■■□□ 2.65
CTCF-203ENST00000566078 SAE1Q9UBE0 346 aaPredicted RBP31.62■■■□□ 2.65
CTCF-203ENST00000566078 SLC12A6Q9UHW9 1150 aa31.62■■■□□ 2.65
CTCF-203ENST00000566078 HS3ST4Q9Y661 456 aa31.62■■■□□ 2.65
CTCF-203ENST00000566078 A0A1W2PRU2 124 aa31.61■■■□□ 2.65
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms