RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 E7ENQ6 273 aa19.55■□□□□ 0.72
CLN3-218ENST00000565688 ARHGAP33O14559 1287 aa19.55■□□□□ 0.72
CLN3-218ENST00000565688 GNSP15586 552 aa19.55■□□□□ 0.72
CLN3-218ENST00000565688 OXTRP30559 389 aa19.55■□□□□ 0.72
CLN3-218ENST00000565688 ARID5AQ03989 594 aa19.55■□□□□ 0.72
CLN3-218ENST00000565688 SEMA3BQ13214 749 aa19.55■□□□□ 0.72
CLN3-218ENST00000565688 ZNF234Q14588 700 aa19.55■□□□□ 0.72
CLN3-218ENST00000565688 STILQ15468 1287 aa19.55■□□□□ 0.72
CLN3-218ENST00000565688 CCDC40Q4G0X9 1142 aa19.55■□□□□ 0.72
CLN3-218ENST00000565688 PKDCCQ504Y2 493 aa19.55■□□□□ 0.72
CLN3-218ENST00000565688 ADGRF1Q5T601 910 aa19.55■□□□□ 0.72
CLN3-218ENST00000565688 TMEM270Q6UE05 265 aa19.55■□□□□ 0.72
CLN3-218ENST00000565688 RGL4Q8IZJ4 473 aa19.55■□□□□ 0.72
CLN3-218ENST00000565688 EDEM1Q92611 657 aa19.55■□□□□ 0.72
CLN3-218ENST00000565688 CIPCQ9C0C6 399 aa19.55■□□□□ 0.72
CLN3-218ENST00000565688 ITM2CQ9NQX7 267 aa19.55■□□□□ 0.72
CLN3-218ENST00000565688 USP36Q9P275 1121 aaKnown RBP19.55■□□□□ 0.72
CLN3-218ENST00000565688 STOML2Q9UJZ1 356 aa19.55■□□□□ 0.72
CLN3-218ENST00000565688 NFE2L3Q9Y4A8 694 aa19.55■□□□□ 0.72
CLN3-218ENST00000565688 P4HA2O15460 535 aa19.54■□□□□ 0.72
CLN3-218ENST00000565688 OPHN1O60890 802 aa19.54■□□□□ 0.72
CLN3-218ENST00000565688 DAOAP59103 153 aa19.54■□□□□ 0.72
CLN3-218ENST00000565688 FOXC1Q12948 553 aa19.54■□□□□ 0.72
CLN3-218ENST00000565688 FOXR2Q6PJQ5 311 aa19.54■□□□□ 0.72
CLN3-218ENST00000565688 PIP4P1Q86T03 277 aa19.54■□□□□ 0.72
CLN3-218ENST00000565688 RBBP8NLQ8NC74 664 aaPredicted RBP19.54■□□□□ 0.72
CLN3-218ENST00000565688 CADM4Q8NFZ8 388 aa19.54■□□□□ 0.72
CLN3-218ENST00000565688 IRGQQ8WZA9 623 aa19.54■□□□□ 0.72
CLN3-218ENST00000565688 PRCCQ92733 491 aaPredicted RBP19.54■□□□□ 0.72
CLN3-218ENST00000565688 SIPA1Q96FS4 1042 aa19.54■□□□□ 0.72
CLN3-218ENST00000565688 TOE1Q96GM8 510 aaKnown RBP19.54■□□□□ 0.72
CLN3-218ENST00000565688 MKRN2Q9H000 416 aaKnown RBP19.54■□□□□ 0.72
CLN3-218ENST00000565688 SFMBT1Q9UHJ3 866 aa19.54■□□□□ 0.72
CLN3-218ENST00000565688 CLEC4EQ9ULY5 219 aa19.54■□□□□ 0.72
CLN3-218ENST00000565688 PCDHB4Q9Y5E5 795 aa19.54■□□□□ 0.72
CLN3-218ENST00000565688 GTF3C3Q9Y5Q9 886 aa19.54■□□□□ 0.72
CLN3-218ENST00000565688 CHD6Q8TD26 2715 aa19.54■□□□□ 0.72
CLN3-218ENST00000565688 LCP1P13796 627 aa19.53■□□□□ 0.72
CLN3-218ENST00000565688 HOXD9P28356 352 aaPredicted RBP19.53■□□□□ 0.72
CLN3-218ENST00000565688 CNGA2Q16280 664 aa19.53■□□□□ 0.72
CLN3-218ENST00000565688 PLEKHG6Q3KR16 790 aa19.53■□□□□ 0.72
CLN3-218ENST00000565688 MSANTD2Q6P1R3 559 aa19.53■□□□□ 0.72
CLN3-218ENST00000565688 SERPINA13PQ6UXR4 307 aa19.53■□□□□ 0.72
CLN3-218ENST00000565688 TMPRSS6Q8IU80 811 aa19.53■□□□□ 0.72
CLN3-218ENST00000565688 PPM1KQ8N3J5 372 aa19.53■□□□□ 0.72
CLN3-218ENST00000565688 MINDY1Q8N5J2 469 aa19.53■□□□□ 0.72
CLN3-218ENST00000565688 WFIKKN2Q8TEU8 576 aa19.53■□□□□ 0.72
CLN3-218ENST00000565688 SLC35F5Q8WV83 523 aa19.53■□□□□ 0.72
CLN3-218ENST00000565688 TFAP2BQ92481 460 aa19.53■□□□□ 0.72
CLN3-218ENST00000565688 GOLGA1Q92805 767 aa19.53■□□□□ 0.72
CLN3-218ENST00000565688 TMA16Q96EY4 203 aaKnown RBP19.53■□□□□ 0.72
CLN3-218ENST00000565688 IRX2Q9BZI1 471 aaPredicted RBP19.53■□□□□ 0.72
CLN3-218ENST00000565688 CD93Q9NPY3 652 aa19.53■□□□□ 0.72
CLN3-218ENST00000565688 FSCN3Q9NQT6 498 aa19.53■□□□□ 0.72
CLN3-218ENST00000565688 WSB2Q9NYS7 404 aaPredicted RBP19.53■□□□□ 0.72
CLN3-218ENST00000565688 MAN1B1Q9UKM7 699 aa19.53■□□□□ 0.72
CLN3-218ENST00000565688 WDR3Q9UNX4 943 aaKnown RBP eCLIP19.53■□□□□ 0.72
CLN3-218ENST00000565688 WASF3Q9UPY6 502 aa19.53■□□□□ 0.72
CLN3-218ENST00000565688 BICDL2A1A5D9 508 aa19.52■□□□□ 0.72
CLN3-218ENST00000565688 TSPAN3O60637 253 aa19.52■□□□□ 0.72
CLN3-218ENST00000565688 EPHX1P07099 455 aa19.52■□□□□ 0.72
CLN3-218ENST00000565688 PROS1P07225 676 aa19.52■□□□□ 0.72
CLN3-218ENST00000565688 ACADMP11310 421 aa19.52■□□□□ 0.72
CLN3-218ENST00000565688 NCAM1P13591 858 aa19.52■□□□□ 0.72
CLN3-218ENST00000565688 CD44P16070 742 aaKnown RBP19.52■□□□□ 0.72
CLN3-218ENST00000565688 TPMTP51580 245 aa19.52■□□□□ 0.72
CLN3-218ENST00000565688 TMEM215Q68D42 235 aa19.52■□□□□ 0.72
CLN3-218ENST00000565688 ISM2Q6H9L7 571 aa19.52■□□□□ 0.72
CLN3-218ENST00000565688 TTI2Q6NXR4 508 aa19.52■□□□□ 0.72
CLN3-218ENST00000565688 UNC45BQ8IWX7 931 aa19.52■□□□□ 0.72
CLN3-218ENST00000565688 HSFY1Q96LI6 401 aa19.52■□□□□ 0.72
CLN3-218ENST00000565688 ZDHHC5Q9C0B5 715 aa19.52■□□□□ 0.72
CLN3-218ENST00000565688 DNAAF2Q9NVR5 837 aaKnown RBP19.52■□□□□ 0.72
CLN3-218ENST00000565688 PLA2G4CQ9UP65 541 aa19.52■□□□□ 0.72
CLN3-218ENST00000565688 PCDH15Q96QU1 1955 aa19.52■□□□□ 0.71
CLN3-218ENST00000565688 MEI4A8MW99 385 aa19.51■□□□□ 0.71
CLN3-218ENST00000565688 M0QYV0 167 aa19.51■□□□□ 0.71
CLN3-218ENST00000565688 MSI1O43347 362 aaKnown RBP19.51■□□□□ 0.71
CLN3-218ENST00000565688 FBXO21O94952 628 aa19.51■□□□□ 0.71
CLN3-218ENST00000565688 GNA14O95837 355 aa19.51■□□□□ 0.71
CLN3-218ENST00000565688 IGLV3-19P01714 112 aa19.51■□□□□ 0.71
CLN3-218ENST00000565688 PRKCHP24723 683 aa19.51■□□□□ 0.71
CLN3-218ENST00000565688 HLA-FP30511 346 aa19.51■□□□□ 0.71
CLN3-218ENST00000565688 SLC11A2P49281 568 aa19.51■□□□□ 0.71
CLN3-218ENST00000565688 RGS7P49802 495 aa19.51■□□□□ 0.71
CLN3-218ENST00000565688 GCNT1Q02742 428 aa19.51■□□□□ 0.71
CLN3-218ENST00000565688 SLC14A1Q13336 389 aa19.51■□□□□ 0.71
CLN3-218ENST00000565688 HNRNPDQ14103 355 aaKnown RBP19.51■□□□□ 0.71
CLN3-218ENST00000565688 MPP7Q5T2T1 576 aa19.51■□□□□ 0.71
CLN3-218ENST00000565688 NUGGCQ68CJ6 796 aa19.51■□□□□ 0.71
CLN3-218ENST00000565688 KLHL10Q6JEL2 608 aa19.51■□□□□ 0.71
CLN3-218ENST00000565688 PMF1Q6P1K2 205 aa19.51■□□□□ 0.71
CLN3-218ENST00000565688 DDX51Q8N8A6 666 aaKnown RBP eCLIP19.51■□□□□ 0.71
CLN3-218ENST00000565688 ZNF557Q8N988 423 aaPredicted RBP19.51■□□□□ 0.71
CLN3-218ENST00000565688 SORCS1Q8WY21 1168 aa19.51■□□□□ 0.71
CLN3-218ENST00000565688 DNASE2BQ8WZ79 361 aa19.51■□□□□ 0.71
CLN3-218ENST00000565688 NUP58Q9BVL2 599 aa19.51■□□□□ 0.71
CLN3-218ENST00000565688 GPR174Q9BXC1 333 aa19.51■□□□□ 0.71
CLN3-218ENST00000565688 KCNJ18B7U540 433 aa19.5■□□□□ 0.71
CLN3-218ENST00000565688 IRAK2O43187 625 aa19.5■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms