RNA–Protein interactions for RNA: ENST00000565236.1

CLN3-215, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 582 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-215ENST00000565236 IRX4P78413 519 aa23.42■■□□□ 1.34
CLN3-215ENST00000565236 ARID5AQ03989 594 aa23.42■■□□□ 1.34
CLN3-215ENST00000565236 EIF4HQ15056 248 aaKnown RBP23.42■■□□□ 1.34
CLN3-215ENST00000565236 DEFB119Q8N690 84 aa23.42■■□□□ 1.34
CLN3-215ENST00000565236 MLKLQ8NB16 471 aa23.42■■□□□ 1.34
CLN3-215ENST00000565236 MRGPRX1Q96LB2 322 aa23.42■■□□□ 1.34
CLN3-215ENST00000565236 FAM81BQ96LP2 452 aa23.42■■□□□ 1.34
CLN3-215ENST00000565236 CIPCQ9C0C6 399 aa23.42■■□□□ 1.34
CLN3-215ENST00000565236 CYP8B1Q9UNU6 501 aa23.42■■□□□ 1.34
CLN3-215ENST00000565236 C4orf47A7E2U8 309 aa23.41■■□□□ 1.34
CLN3-215ENST00000565236 ADRB1P08588 477 aa23.41■■□□□ 1.34
CLN3-215ENST00000565236 HOXD9P28356 352 aaPredicted RBP23.41■■□□□ 1.34
CLN3-215ENST00000565236 IL12RB1P42701 662 aa23.41■■□□□ 1.34
CLN3-215ENST00000565236 ACADSBP45954 432 aa23.41■■□□□ 1.34
CLN3-215ENST00000565236 SLC11A2P49281 568 aa23.41■■□□□ 1.34
CLN3-215ENST00000565236 TBX4P57082 545 aa23.41■■□□□ 1.34
CLN3-215ENST00000565236 TPD52L1Q16890 204 aaPredicted RBP23.41■■□□□ 1.34
CLN3-215ENST00000565236 NUGGCQ68CJ6 796 aa23.41■■□□□ 1.34
CLN3-215ENST00000565236 KIAA1324Q6UXG2 1013 aaKnown RBP23.41■■□□□ 1.34
CLN3-215ENST00000565236 GBP6Q6ZN66 633 aa23.41■■□□□ 1.34
CLN3-215ENST00000565236 MED15Q96RN5 788 aa23.41■■□□□ 1.34
CLN3-215ENST00000565236 LSM14BQ9BX40 385 aaKnown RBP23.41■■□□□ 1.34
CLN3-215ENST00000565236 NUSAP1Q9BXS6 441 aaKnown RBP23.41■■□□□ 1.34
CLN3-215ENST00000565236 SLC6A17Q9H1V8 727 aa23.41■■□□□ 1.34
CLN3-215ENST00000565236 TMEM74BQ9NUR3 256 aa23.41■■□□□ 1.34
CLN3-215ENST00000565236 EVLQ9UI08 416 aaPredicted RBP23.41■■□□□ 1.34
CLN3-215ENST00000565236 IGHV1OR15-9A0A0B4J2B8 117 aa23.4■■□□□ 1.34
CLN3-215ENST00000565236 SART1O43290 800 aaKnown RBP23.4■■□□□ 1.34
CLN3-215ENST00000565236 THAP12O43422 761 aa23.4■■□□□ 1.34
CLN3-215ENST00000565236 SYNCRIPO60506 623 aaKnown RBP23.4■■□□□ 1.34
CLN3-215ENST00000565236 NCAM1P13591 858 aa23.4■■□□□ 1.34
CLN3-215ENST00000565236 SLC9A1P19634 815 aa23.4■■□□□ 1.34
CLN3-215ENST00000565236 ITPKAP23677 461 aa23.4■■□□□ 1.34
CLN3-215ENST00000565236 RING1Q06587 406 aa23.4■■□□□ 1.34
CLN3-215ENST00000565236 ENPP2Q13822 863 aa23.4■■□□□ 1.34
CLN3-215ENST00000565236 ZNF234Q14588 700 aa23.4■■□□□ 1.34
CLN3-215ENST00000565236 FUT11Q495W5 492 aa23.4■■□□□ 1.34
CLN3-215ENST00000565236 TRIM61Q5EBN2 209 aa23.4■■□□□ 1.34
CLN3-215ENST00000565236 DAB2IPQ5VWQ8 1189 aa23.4■■□□□ 1.34
CLN3-215ENST00000565236 DENND1BQ6P3S1 775 aa23.4■■□□□ 1.34
CLN3-215ENST00000565236 TRIM65Q6PJ69 517 aa23.4■■□□□ 1.34
CLN3-215ENST00000565236 ZNF606Q8WXB4 792 aa23.4■■□□□ 1.34
CLN3-215ENST00000565236 FAM149B1Q96BN6 582 aa23.4■■□□□ 1.34
CLN3-215ENST00000565236 TMEM9BQ9NQ34 198 aa23.4■■□□□ 1.34
CLN3-215ENST00000565236 CEP192Q8TEP8 1941 aa23.39■■□□□ 1.34
CLN3-215ENST00000565236 NDUFS2O75306 463 aa23.39■■□□□ 1.33
CLN3-215ENST00000565236 IGLV3-27P01718 113 aa23.39■■□□□ 1.33
CLN3-215ENST00000565236 GNA15P30679 374 aa23.39■■□□□ 1.33
CLN3-215ENST00000565236 USP8P40818 1118 aa23.39■■□□□ 1.33
CLN3-215ENST00000565236 MTIF2P46199 727 aaKnown RBP23.39■■□□□ 1.33
CLN3-215ENST00000565236 RPL34P49207 117 aaKnown RBP23.39■■□□□ 1.33
CLN3-215ENST00000565236 MEA1Q16626 185 aa23.39■■□□□ 1.33
CLN3-215ENST00000565236 ARHGAP44Q17R89 818 aa23.39■■□□□ 1.33
CLN3-215ENST00000565236 EXOC3L4Q17RC7 722 aa23.39■■□□□ 1.33
CLN3-215ENST00000565236 GJB7Q6PEY0 223 aa23.39■■□□□ 1.33
CLN3-215ENST00000565236 IRF2BP1Q8IU81 584 aa23.39■■□□□ 1.33
CLN3-215ENST00000565236 STK32AQ8WU08 396 aa23.39■■□□□ 1.33
CLN3-215ENST00000565236 SORCS1Q8WY21 1168 aa23.39■■□□□ 1.33
CLN3-215ENST00000565236 PRDM16Q9HAZ2 1276 aa23.39■■□□□ 1.33
CLN3-215ENST00000565236 PILRBQ9UKJ0 227 aa23.39■■□□□ 1.33
CLN3-215ENST00000565236 PI4KAP42356 2102 aa23.39■■□□□ 1.33
CLN3-215ENST00000565236 FYNP06241 537 aa23.38■■□□□ 1.33
CLN3-215ENST00000565236 HLA-FP30511 346 aa23.38■■□□□ 1.33
CLN3-215ENST00000565236 HOXD12P35452 270 aa23.38■■□□□ 1.33
CLN3-215ENST00000565236 ZNF33AQ06730 810 aa23.38■■□□□ 1.33
CLN3-215ENST00000565236 LMAN2Q12907 356 aa23.38■■□□□ 1.33
CLN3-215ENST00000565236 TMEM215Q68D42 235 aa23.38■■□□□ 1.33
CLN3-215ENST00000565236 RFWD3Q6PCD5 774 aa23.38■■□□□ 1.33
CLN3-215ENST00000565236 SERPINA13PQ6UXR4 307 aa23.38■■□□□ 1.33
CLN3-215ENST00000565236 WFIKKN2Q8TEU8 576 aa23.38■■□□□ 1.33
CLN3-215ENST00000565236 AZIN2Q96A70 460 aa23.38■■□□□ 1.33
CLN3-215ENST00000565236 TRIM62Q9BVG3 475 aa23.38■■□□□ 1.33
CLN3-215ENST00000565236 SLC4A5Q9BY07 1137 aa23.38■■□□□ 1.33
CLN3-215ENST00000565236 IRX2Q9BZI1 471 aaPredicted RBP23.38■■□□□ 1.33
CLN3-215ENST00000565236 CLSTN2Q9H4D0 955 aa23.38■■□□□ 1.33
CLN3-215ENST00000565236 APEX2Q9UBZ4 518 aa23.38■■□□□ 1.33
CLN3-215ENST00000565236 PLA2G4CQ9UP65 541 aa23.38■■□□□ 1.33
CLN3-215ENST00000565236 NAALADL1Q9UQQ1 740 aa23.38■■□□□ 1.33
CLN3-215ENST00000565236 ATXN2Q99700 1313 aaKnown RBP23.37■■□□□ 1.33
CLN3-215ENST00000565236 GOLGA6L7A0A1B0GV03 622 aa23.37■■□□□ 1.33
CLN3-215ENST00000565236 GTPBP10A4D1E9 387 aaKnown RBP23.37■■□□□ 1.33
CLN3-215ENST00000565236 CAPN9O14815 690 aa23.37■■□□□ 1.33
CLN3-215ENST00000565236 IRAK2O43187 625 aa23.37■■□□□ 1.33
CLN3-215ENST00000565236 ACSL4O60488 711 aa23.37■■□□□ 1.33
CLN3-215ENST00000565236 MPP7Q5T2T1 576 aa23.37■■□□□ 1.33
CLN3-215ENST00000565236 PIK3R6Q5UE93 754 aa23.37■■□□□ 1.33
CLN3-215ENST00000565236 METTL3Q86U44 580 aaKnown RBP23.37■■□□□ 1.33
CLN3-215ENST00000565236 CEP76Q8TAP6 659 aa23.37■■□□□ 1.33
CLN3-215ENST00000565236 DQX1Q8TE96 717 aaKnown RBP23.37■■□□□ 1.33
CLN3-215ENST00000565236 SERPINB11Q96P15 392 aa23.37■■□□□ 1.33
CLN3-215ENST00000565236 DDX50Q9BQ39 737 aaKnown RBP23.37■■□□□ 1.33
CLN3-215ENST00000565236 MKRN2Q9H000 416 aaKnown RBP23.37■■□□□ 1.33
CLN3-215ENST00000565236 ACP6Q9NPH0 428 aa23.37■■□□□ 1.33
CLN3-215ENST00000565236 ABCB8Q9NUT2 735 aa23.37■■□□□ 1.33
CLN3-215ENST00000565236 TLR6Q9Y2C9 796 aa23.37■■□□□ 1.33
CLN3-215ENST00000565236 TNRC6BQ9UPQ9 1833 aaKnown RBP23.36■■□□□ 1.33
CLN3-215ENST00000565236 CDX4O14627 284 aaPredicted RBP23.36■■□□□ 1.33
CLN3-215ENST00000565236 TBL1XO60907 577 aa23.36■■□□□ 1.33
CLN3-215ENST00000565236 KCNK5O95279 499 aa23.36■■□□□ 1.33
CLN3-215ENST00000565236 CFIP05156 583 aa23.36■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 68.4 ms