RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 MTA1Q13330 715 aa13.94□□□□□ -0.18
CLK3-216ENST00000564468 C10orf76Q5T2E6 689 aa13.94□□□□□ -0.18
CLK3-216ENST00000564468 FYB2Q5VWT5 728 aa13.94□□□□□ -0.18
CLK3-216ENST00000564468 CACNA2D4Q7Z3S7 1137 aa13.94□□□□□ -0.18
CLK3-216ENST00000564468 ERICH1Q86X53 443 aa13.94□□□□□ -0.18
CLK3-216ENST00000564468 ZNF557Q8N988 423 aaPredicted RBP13.94□□□□□ -0.18
CLK3-216ENST00000564468 EPS8L1Q8TE68 723 aa13.94□□□□□ -0.18
CLK3-216ENST00000564468 C18orf8Q96DM3 657 aa13.94□□□□□ -0.18
CLK3-216ENST00000564468 TMA16Q96EY4 203 aaKnown RBP13.94□□□□□ -0.18
CLK3-216ENST00000564468 EPC1Q9H2F5 836 aa13.94□□□□□ -0.18
CLK3-216ENST00000564468 RRN3Q9NYV6 651 aa13.94□□□□□ -0.18
CLK3-216ENST00000564468 SLC12A6Q9UHW9 1150 aa13.94□□□□□ -0.18
CLK3-216ENST00000564468 FBXO10Q9UK96 956 aa13.94□□□□□ -0.18
CLK3-216ENST00000564468 SLC27A6Q9Y2P4 619 aa13.94□□□□□ -0.18
CLK3-216ENST00000564468 STARD13Q9Y3M8 1113 aa13.94□□□□□ -0.18
CLK3-216ENST00000564468 PRR5-ARHGAP8B1AHC4 643 aa13.93□□□□□ -0.18
CLK3-216ENST00000564468 ACSL4O60488 711 aa13.93□□□□□ -0.18
CLK3-216ENST00000564468 ALDH1A2O94788 518 aa13.93□□□□□ -0.18
CLK3-216ENST00000564468 CISD3P0C7P0 127 aa13.93□□□□□ -0.18
CLK3-216ENST00000564468 SLC2A3P11169 496 aa13.93□□□□□ -0.18
CLK3-216ENST00000564468 ATP1A3P13637 1013 aa13.93□□□□□ -0.18
CLK3-216ENST00000564468 SCNN1AP37088 669 aa13.93□□□□□ -0.18
CLK3-216ENST00000564468 KIR2DL1P43626 348 aaPredicted RBP13.93□□□□□ -0.18
CLK3-216ENST00000564468 DGKEP52429 567 aa13.93□□□□□ -0.18
CLK3-216ENST00000564468 JAM2P57087 298 aa13.93□□□□□ -0.18
CLK3-216ENST00000564468 ARHGAP8P85298 464 aa13.93□□□□□ -0.18
CLK3-216ENST00000564468 SLC6A3Q01959 620 aa13.93□□□□□ -0.18
CLK3-216ENST00000564468 PTPN20Q4JDL3 420 aa13.93□□□□□ -0.18
CLK3-216ENST00000564468 DCAF6Q58WW2 860 aa13.93□□□□□ -0.18
CLK3-216ENST00000564468 TAF3Q5VWG9 929 aa13.93□□□□□ -0.18
CLK3-216ENST00000564468 HEATR6Q6AI08 1181 aaKnown RBP13.93□□□□□ -0.18
CLK3-216ENST00000564468 SDE2Q6IQ49 451 aa13.93□□□□□ -0.18
CLK3-216ENST00000564468 TRIM72Q6ZMU5 477 aa13.93□□□□□ -0.18
CLK3-216ENST00000564468 SLC26A9Q7LBE3 791 aa13.93□□□□□ -0.18
CLK3-216ENST00000564468 APTXQ7Z2E3 356 aaKnown RBP13.93□□□□□ -0.18
CLK3-216ENST00000564468 NOP9Q86U38 636 aaKnown RBP13.93□□□□□ -0.18
CLK3-216ENST00000564468 ZNF513Q8N8E2 541 aaPredicted RBP13.93□□□□□ -0.18
CLK3-216ENST00000564468 ZNF397Q8NF99 534 aaPredicted RBP13.93□□□□□ -0.18
CLK3-216ENST00000564468 TSTD1Q8NFU3 115 aa13.93□□□□□ -0.18
CLK3-216ENST00000564468 UCMAQ8WVF2 138 aa13.93□□□□□ -0.18
CLK3-216ENST00000564468 DDX1Q92499 740 aaKnown RBP13.93□□□□□ -0.18
CLK3-216ENST00000564468 BHMTQ93088 406 aa13.93□□□□□ -0.18
CLK3-216ENST00000564468 POLMQ9NP87 494 aaPredicted RBP13.93□□□□□ -0.18
CLK3-216ENST00000564468 RTN4Q9NQC3 1192 aaKnown RBP13.93□□□□□ -0.18
CLK3-216ENST00000564468 SLTMQ9NWH9 1034 aaKnown RBP eCLIP13.93□□□□□ -0.18
CLK3-216ENST00000564468 PLK2Q9NYY3 685 aa13.93□□□□□ -0.18
CLK3-216ENST00000564468 SDK1Q7Z5N4 2213 aa13.92□□□□□ -0.18
CLK3-216ENST00000564468 SPTBN2O15020 2390 aa13.92□□□□□ -0.18
CLK3-216ENST00000564468 GPR179Q6PRD1 2367 aa13.92□□□□□ -0.18
CLK3-216ENST00000564468 GOLGA6L19H0YKK7 550 aa13.92□□□□□ -0.18
CLK3-216ENST00000564468 NPC1O15118 1278 aa13.92□□□□□ -0.18
CLK3-216ENST00000564468 KLF8O95600 359 aaPredicted RBP13.92□□□□□ -0.18
CLK3-216ENST00000564468 TRUB2O95900 331 aaKnown RBP13.92□□□□□ -0.18
CLK3-216ENST00000564468 SERPINC1P01008 464 aa13.92□□□□□ -0.18
CLK3-216ENST00000564468 ERBB2P04626 1255 aa13.92□□□□□ -0.18
CLK3-216ENST00000564468 MMEP08473 750 aa13.92□□□□□ -0.18
CLK3-216ENST00000564468 NOS2P35228 1153 aa13.92□□□□□ -0.18
CLK3-216ENST00000564468 GABRB2P47870 512 aa13.92□□□□□ -0.18
CLK3-216ENST00000564468 CDR2Q01850 454 aa13.92□□□□□ -0.18
CLK3-216ENST00000564468 IQCB1Q15051 598 aa13.92□□□□□ -0.18
CLK3-216ENST00000564468 CRY1Q16526 586 aa13.92□□□□□ -0.18
CLK3-216ENST00000564468 MPP7Q5T2T1 576 aa13.92□□□□□ -0.18
CLK3-216ENST00000564468 SYPL2Q5VXT5 272 aa13.92□□□□□ -0.18
CLK3-216ENST00000564468 OLFML1Q6UWY5 402 aa13.92□□□□□ -0.18
CLK3-216ENST00000564468 FAM183BPQ6ZVS7 135 aa13.92□□□□□ -0.18
CLK3-216ENST00000564468 TAC4Q86UU9 113 aa13.92□□□□□ -0.18
CLK3-216ENST00000564468 CCDC117Q8IWD4 279 aaPredicted RBP13.92□□□□□ -0.18
CLK3-216ENST00000564468 DEFB106AQ8N104 65 aa13.92□□□□□ -0.18
CLK3-216ENST00000564468 DCLK2Q8N568 766 aa13.92□□□□□ -0.18
CLK3-216ENST00000564468 CCDC33Q8N5R6 958 aa13.92□□□□□ -0.18
CLK3-216ENST00000564468 ALLCQ8N6M5 410 aa13.92□□□□□ -0.18
CLK3-216ENST00000564468 ATP6V0D2Q8N8Y2 350 aa13.92□□□□□ -0.18
CLK3-216ENST00000564468 IL17RCQ8NAC3 791 aa13.92□□□□□ -0.18
CLK3-216ENST00000564468 TXNDC5Q8NBS9 432 aaKnown RBP13.92□□□□□ -0.18
CLK3-216ENST00000564468 SLC39A13Q96H72 371 aa13.92□□□□□ -0.18
CLK3-216ENST00000564468 FCRL2Q96LA5 508 aaPredicted RBP13.92□□□□□ -0.18
CLK3-216ENST00000564468 CNTNAP3BQ96NU0 1288 aa13.92□□□□□ -0.18
CLK3-216ENST00000564468 SLC2A13Q96QE2 648 aa13.92□□□□□ -0.18
CLK3-216ENST00000564468 CNTNAP3Q9BZ76 1288 aa13.92□□□□□ -0.18
CLK3-216ENST00000564468 C2orf42Q9NWW7 574 aa13.92□□□□□ -0.18
CLK3-216ENST00000564468 TJP2Q9UDY2 1190 aa13.92□□□□□ -0.18
CLK3-216ENST00000564468 EBF1Q9UH73 591 aa13.92□□□□□ -0.18
CLK3-216ENST00000564468 THADAQ6YHU6 1953 aa13.92□□□□□ -0.18
CLK3-216ENST00000564468 GFRA2O00451 464 aa13.91□□□□□ -0.18
CLK3-216ENST00000564468 AXIN1O15169 862 aa13.91□□□□□ -0.18
CLK3-216ENST00000564468 EPHB6O15197 1021 aa13.91□□□□□ -0.18
CLK3-216ENST00000564468 ZBTB24O43167 697 aaPredicted RBP13.91□□□□□ -0.18
CLK3-216ENST00000564468 TIMM44O43615 452 aa13.91□□□□□ -0.18
CLK3-216ENST00000564468 TSPAN3O60637 253 aa13.91□□□□□ -0.18
CLK3-216ENST00000564468 DAB1O75553 588 aa13.91□□□□□ -0.18
CLK3-216ENST00000564468 IGLV3-25P01717 112 aa13.91□□□□□ -0.18
CLK3-216ENST00000564468 NTSR1P30989 418 aa13.91□□□□□ -0.18
CLK3-216ENST00000564468 NOMO3P69849 1222 aa13.91□□□□□ -0.18
CLK3-216ENST00000564468 LMNB2Q03252 620 aa13.91□□□□□ -0.18
CLK3-216ENST00000564468 MESP2Q0VG99 397 aa13.91□□□□□ -0.18
CLK3-216ENST00000564468 SIM2Q14190 667 aaPredicted RBP13.91□□□□□ -0.18
CLK3-216ENST00000564468 EIF4HQ15056 248 aaKnown RBP13.91□□□□□ -0.18
CLK3-216ENST00000564468 EMC10Q5UCC4 262 aa13.91□□□□□ -0.18
CLK3-216ENST00000564468 CEP68Q76N32 757 aa13.91□□□□□ -0.18
CLK3-216ENST00000564468 ANKS1BQ7Z6G8 1248 aa13.91□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms