RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 A0A1B0GTW7 788 aa17.63■□□□□ 0.41
CLN3-211ENST00000564091 A0A1W2PQ27 194 aa17.63■□□□□ 0.41
CLN3-211ENST00000564091 A0A1W2PQ64 194 aa17.63■□□□□ 0.41
CLN3-211ENST00000564091 EPHX1P07099 455 aa17.63■□□□□ 0.41
CLN3-211ENST00000564091 EPB41P11171 864 aaKnown RBP17.63■□□□□ 0.41
CLN3-211ENST00000564091 OXTRP30559 389 aa17.63■□□□□ 0.41
CLN3-211ENST00000564091 HNRNPDQ14103 355 aaKnown RBP17.63■□□□□ 0.41
CLN3-211ENST00000564091 TRIP4Q15650 581 aaPredicted RBP17.63■□□□□ 0.41
CLN3-211ENST00000564091 ZNF423Q2M1K9 1284 aa17.63■□□□□ 0.41
CLN3-211ENST00000564091 DCAF17Q5H9S7 520 aaPredicted RBP17.63■□□□□ 0.41
CLN3-211ENST00000564091 SERPINA13PQ6UXR4 307 aa17.63■□□□□ 0.41
CLN3-211ENST00000564091 RAB44Q7Z6P3 723 aaPredicted RBP17.63■□□□□ 0.41
CLN3-211ENST00000564091 FAM124AQ86V42 546 aa17.63■□□□□ 0.41
CLN3-211ENST00000564091 NAXDQ8IW45 347 aa17.63■□□□□ 0.41
CLN3-211ENST00000564091 FAM217AQ8IXS0 508 aa17.63■□□□□ 0.41
CLN3-211ENST00000564091 CADM4Q8NFZ8 388 aa17.63■□□□□ 0.41
CLN3-211ENST00000564091 UBA3Q8TBC4 463 aa17.63■□□□□ 0.41
CLN3-211ENST00000564091 EDEM1Q92611 657 aa17.63■□□□□ 0.41
CLN3-211ENST00000564091 PLD4Q96BZ4 506 aa17.63■□□□□ 0.41
CLN3-211ENST00000564091 IL21RQ9HBE5 538 aa17.63■□□□□ 0.41
CLN3-211ENST00000564091 LRRC4Q9HBW1 653 aa17.63■□□□□ 0.41
CLN3-211ENST00000564091 PCDHB9Q9Y5E1 797 aa17.63■□□□□ 0.41
CLN3-211ENST00000564091 ATRXP46100 2492 aa17.62■□□□□ 0.41
CLN3-211ENST00000564091 METTL12A8MUP2 240 aa17.62■□□□□ 0.41
CLN3-211ENST00000564091 XPO1O14980 1071 aaKnown RBP17.62■□□□□ 0.41
CLN3-211ENST00000564091 STX10O60499 249 aa17.62■□□□□ 0.41
CLN3-211ENST00000564091 ACADMP11310 421 aa17.62■□□□□ 0.41
CLN3-211ENST00000564091 CD19P15391 556 aa17.62■□□□□ 0.41
CLN3-211ENST00000564091 HOXD9P28356 352 aaPredicted RBP17.62■□□□□ 0.41
CLN3-211ENST00000564091 HARS2P49590 506 aaKnown RBP17.62■□□□□ 0.41
CLN3-211ENST00000564091 ARID5AQ03989 594 aa17.62■□□□□ 0.41
CLN3-211ENST00000564091 CUL2Q13617 745 aa17.62■□□□□ 0.41
CLN3-211ENST00000564091 EIF4HQ15056 248 aaKnown RBP17.62■□□□□ 0.41
CLN3-211ENST00000564091 TCERG1LQ5VWI1 586 aa17.62■□□□□ 0.41
CLN3-211ENST00000564091 BSPRYQ5W0U4 402 aa17.62■□□□□ 0.41
CLN3-211ENST00000564091 CYB5D2Q8WUJ1 264 aa17.62■□□□□ 0.41
CLN3-211ENST00000564091 NUP58Q9BVL2 599 aa17.62■□□□□ 0.41
CLN3-211ENST00000564091 SLC2A11Q9BYW1 496 aa17.62■□□□□ 0.41
CLN3-211ENST00000564091 ZDHHC5Q9C0B5 715 aa17.62■□□□□ 0.41
CLN3-211ENST00000564091 GDPD2Q9HCC8 539 aa17.62■□□□□ 0.41
CLN3-211ENST00000564091 FAM221BA6H8Z2 402 aa17.61■□□□□ 0.41
CLN3-211ENST00000564091 YJEFN3A6XGL0 299 aa17.61■□□□□ 0.41
CLN3-211ENST00000564091 E7ENQ6 273 aa17.61■□□□□ 0.41
CLN3-211ENST00000564091 BCAT2O15382 392 aaPredicted RBP17.61■□□□□ 0.41
CLN3-211ENST00000564091 TIMM44O43615 452 aa17.61■□□□□ 0.41
CLN3-211ENST00000564091 FTH1P19P0C7X4 201 aa17.61■□□□□ 0.41
CLN3-211ENST00000564091 HLA-FP30511 346 aa17.61■□□□□ 0.41
CLN3-211ENST00000564091 PI4KAP42356 2102 aa17.61■□□□□ 0.41
CLN3-211ENST00000564091 PRCPP42785 496 aa17.61■□□□□ 0.41
CLN3-211ENST00000564091 BCAT1P54687 386 aa17.61■□□□□ 0.41
CLN3-211ENST00000564091 BNC1Q01954 994 aa17.61■□□□□ 0.41
CLN3-211ENST00000564091 ADIGQ0VDE8 80 aa17.61■□□□□ 0.41
CLN3-211ENST00000564091 LRMPQ12912 555 aa17.61■□□□□ 0.41
CLN3-211ENST00000564091 PNOCQ13519 176 aa17.61■□□□□ 0.41
CLN3-211ENST00000564091 MPPE1Q53F39 396 aa17.61■□□□□ 0.41
CLN3-211ENST00000564091 SGO2Q562F6 1265 aa17.61■□□□□ 0.41
CLN3-211ENST00000564091 ZNF366Q8N895 744 aa17.61■□□□□ 0.41
CLN3-211ENST00000564091 RNF139Q8WU17 664 aa17.61■□□□□ 0.41
CLN3-211ENST00000564091 IPO9Q96P70 1041 aaKnown RBP17.61■□□□□ 0.41
CLN3-211ENST00000564091 SCAND2PQ9GZW5 306 aaPredicted RBP17.61■□□□□ 0.41
CLN3-211ENST00000564091 GAREM1Q9H706 876 aa17.61■□□□□ 0.41
CLN3-211ENST00000564091 HESX1Q9UBX0 185 aa17.61■□□□□ 0.41
CLN3-211ENST00000564091 EIF2B4Q9UI10 523 aaKnown RBP17.61■□□□□ 0.41
CLN3-211ENST00000564091 NFE2L3Q9Y4A8 694 aa17.61■□□□□ 0.41
CLN3-211ENST00000564091 SLCO1B1Q9Y6L6 691 aa17.61■□□□□ 0.41
CLN3-211ENST00000564091 CELSR3Q9NYQ7 3312 aa17.6■□□□□ 0.41
CLN3-211ENST00000564091 TAF4O00268 1085 aa17.6■□□□□ 0.41
CLN3-211ENST00000564091 MSI1O43347 362 aaKnown RBP17.6■□□□□ 0.41
CLN3-211ENST00000564091 IGLV3-19P01714 112 aa17.6■□□□□ 0.41
CLN3-211ENST00000564091 HOXB3P14651 431 aaPredicted RBP17.6■□□□□ 0.41
CLN3-211ENST00000564091 BST2Q10589 180 aaKnown RBP17.6■□□□□ 0.41
CLN3-211ENST00000564091 FNDC3BQ53EP0 1204 aaKnown RBP17.6■□□□□ 0.41
CLN3-211ENST00000564091 OR2T3Q8NH03 318 aa17.6■□□□□ 0.41
CLN3-211ENST00000564091 SETD7Q8WTS6 366 aaKnown RBP17.6■□□□□ 0.41
CLN3-211ENST00000564091 TMA16Q96EY4 203 aaKnown RBP17.6■□□□□ 0.41
CLN3-211ENST00000564091 OLA1Q9NTK5 396 aaKnown RBP17.6■□□□□ 0.41
CLN3-211ENST00000564091 ABCB8Q9NUT2 735 aa17.6■□□□□ 0.41
CLN3-211ENST00000564091 COQ4Q9Y3A0 265 aa17.6■□□□□ 0.41
CLN3-211ENST00000564091 HBS1LQ9Y450 684 aaKnown RBP17.6■□□□□ 0.41
CLN3-211ENST00000564091 DSPP15924 2871 aaKnown RBP17.59■□□□□ 0.41
CLN3-211ENST00000564091 PCDH15Q96QU1 1955 aa17.59■□□□□ 0.41
CLN3-211ENST00000564091 CBFA2T3O75081 653 aa17.59■□□□□ 0.41
CLN3-211ENST00000564091 LCP1P13796 627 aa17.59■□□□□ 0.41
CLN3-211ENST00000564091 SGSHP51688 502 aa17.59■□□□□ 0.41
CLN3-211ENST00000564091 PMS1P54277 932 aaKnown RBP17.59■□□□□ 0.41
CLN3-211ENST00000564091 CAMK2GQ13555 558 aaPredicted RBP17.59■□□□□ 0.41
CLN3-211ENST00000564091 E2F5Q15329 346 aa17.59■□□□□ 0.41
CLN3-211ENST00000564091 ANKRD40Q6AI12 368 aa17.59■□□□□ 0.41
CLN3-211ENST00000564091 CHST9Q7L1S5 443 aa17.59■□□□□ 0.41
CLN3-211ENST00000564091 ADIPOR2Q86V24 386 aa17.59■□□□□ 0.41
CLN3-211ENST00000564091 SIX6OS1Q8N1H7 587 aa17.59■□□□□ 0.41
CLN3-211ENST00000564091 C1orf216Q8TAB5 229 aa17.59■□□□□ 0.41
CLN3-211ENST00000564091 ADAMTS14Q8WXS8 1223 aa17.59■□□□□ 0.41
CLN3-211ENST00000564091 SNX19Q92543 992 aa17.59■□□□□ 0.41
CLN3-211ENST00000564091 LHX5Q9H2C1 402 aa17.59■□□□□ 0.41
CLN3-211ENST00000564091 C6orf106Q9H6K1 298 aaPredicted RBP17.59■□□□□ 0.41
CLN3-211ENST00000564091 STOML2Q9UJZ1 356 aa17.59■□□□□ 0.41
CLN3-211ENST00000564091 PCOLCE2Q9UKZ9 415 aa17.59■□□□□ 0.41
CLN3-211ENST00000564091 PLA2G4CQ9UP65 541 aa17.59■□□□□ 0.41
CLN3-211ENST00000564091 FNDC3AQ9Y2H6 1198 aaKnown RBP17.59■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 54.6 ms