RNA–Protein interactions for RNA: ENST00000562298.1

VPS9D1-AS1-201, VPS9D1 antisense RNA 1, humanhuman

TSL 1 (best)

Gene VPS9D1-AS1, Length 931 nt, Biotype antisense RNA, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-AS1-201ENST00000562298 TRIM49BA6NDI0 452 aa17.45■□□□□ 0.38
VPS9D1-AS1-201ENST00000562298 YJEFN3A6XGL0 299 aa17.45■□□□□ 0.38
VPS9D1-AS1-201ENST00000562298 E7ENQ6 273 aa17.45■□□□□ 0.38
VPS9D1-AS1-201ENST00000562298 SYNCRIPO60506 623 aaKnown RBP17.45■□□□□ 0.38
VPS9D1-AS1-201ENST00000562298 NCAM1P13591 858 aa17.45■□□□□ 0.38
VPS9D1-AS1-201ENST00000562298 GNSP15586 552 aa17.45■□□□□ 0.38
VPS9D1-AS1-201ENST00000562298 BST2Q10589 180 aaKnown RBP17.45■□□□□ 0.38
VPS9D1-AS1-201ENST00000562298 GRIK2Q13002 908 aa17.45■□□□□ 0.38
VPS9D1-AS1-201ENST00000562298 COBLL1Q53SF7 1204 aa17.45■□□□□ 0.38
VPS9D1-AS1-201ENST00000562298 SGO2Q562F6 1265 aa17.45■□□□□ 0.38
VPS9D1-AS1-201ENST00000562298 WDR45BQ5MNZ6 344 aa17.45■□□□□ 0.38
VPS9D1-AS1-201ENST00000562298 ZNF658Q5TYW1 1059 aaPredicted RBP17.45■□□□□ 0.38
VPS9D1-AS1-201ENST00000562298 ANKRD40Q6AI12 368 aa17.45■□□□□ 0.38
VPS9D1-AS1-201ENST00000562298 CACUL1Q86Y37 369 aa17.45■□□□□ 0.38
VPS9D1-AS1-201ENST00000562298 UBA3Q8TBC4 463 aa17.45■□□□□ 0.38
VPS9D1-AS1-201ENST00000562298 DNASE2BQ8WZ79 361 aa17.45■□□□□ 0.38
VPS9D1-AS1-201ENST00000562298 EDEM1Q92611 657 aa17.45■□□□□ 0.38
VPS9D1-AS1-201ENST00000562298 SIPA1Q96FS4 1042 aa17.45■□□□□ 0.38
VPS9D1-AS1-201ENST00000562298 SLC2A11Q9BYW1 496 aa17.45■□□□□ 0.38
VPS9D1-AS1-201ENST00000562298 RMND1Q9NWS8 449 aa17.45■□□□□ 0.38
VPS9D1-AS1-201ENST00000562298 SFMBT1Q9UHJ3 866 aa17.45■□□□□ 0.38
VPS9D1-AS1-201ENST00000562298 LAMA5O15230 3695 aa17.45■□□□□ 0.38
VPS9D1-AS1-201ENST00000562298 TMEM8BA6NDV4 472 aa17.44■□□□□ 0.38
VPS9D1-AS1-201ENST00000562298 MEI4A8MW99 385 aa17.44■□□□□ 0.38
VPS9D1-AS1-201ENST00000562298 O00370 1275 aa17.44■□□□□ 0.38
VPS9D1-AS1-201ENST00000562298 IGLV3-19P01714 112 aa17.44■□□□□ 0.38
VPS9D1-AS1-201ENST00000562298 CD19P15391 556 aa17.44■□□□□ 0.38
VPS9D1-AS1-201ENST00000562298 HLA-FP30511 346 aa17.44■□□□□ 0.38
VPS9D1-AS1-201ENST00000562298 FKBP3Q00688 224 aaKnown RBP17.44■□□□□ 0.38
VPS9D1-AS1-201ENST00000562298 SLC14A1Q13336 389 aa17.44■□□□□ 0.38
VPS9D1-AS1-201ENST00000562298 MPPE1Q53F39 396 aa17.44■□□□□ 0.38
VPS9D1-AS1-201ENST00000562298 BSPRYQ5W0U4 402 aa17.44■□□□□ 0.38
VPS9D1-AS1-201ENST00000562298 SERPINA13PQ6UXR4 307 aa17.44■□□□□ 0.38
VPS9D1-AS1-201ENST00000562298 ZCCHC9Q8N567 271 aaKnown RBP17.44■□□□□ 0.38
VPS9D1-AS1-201ENST00000562298 CADM4Q8NFZ8 388 aa17.44■□□□□ 0.38
VPS9D1-AS1-201ENST00000562298 PRCCQ92733 491 aaPredicted RBP17.44■□□□□ 0.38
VPS9D1-AS1-201ENST00000562298 ERCC4Q92889 916 aaPredicted RBP17.44■□□□□ 0.38
VPS9D1-AS1-201ENST00000562298 SLC35C1Q96A29 364 aa17.44■□□□□ 0.38
VPS9D1-AS1-201ENST00000562298 IPO9Q96P70 1041 aaKnown RBP17.44■□□□□ 0.38
VPS9D1-AS1-201ENST00000562298 LRRC4Q9HBW1 653 aa17.44■□□□□ 0.38
VPS9D1-AS1-201ENST00000562298 OLA1Q9NTK5 396 aaKnown RBP17.44■□□□□ 0.38
VPS9D1-AS1-201ENST00000562298 HESX1Q9UBX0 185 aa17.44■□□□□ 0.38
VPS9D1-AS1-201ENST00000562298 STOML2Q9UJZ1 356 aa17.44■□□□□ 0.38
VPS9D1-AS1-201ENST00000562298 NFE2L3Q9Y4A8 694 aa17.44■□□□□ 0.38
VPS9D1-AS1-201ENST00000562298 IGF2RP11717 2491 aa17.44■□□□□ 0.38
VPS9D1-AS1-201ENST00000562298 MSI1O43347 362 aaKnown RBP17.43■□□□□ 0.38
VPS9D1-AS1-201ENST00000562298 SH3BP5O60239 455 aa17.43■□□□□ 0.38
VPS9D1-AS1-201ENST00000562298 TSPAN3O60637 253 aa17.43■□□□□ 0.38
VPS9D1-AS1-201ENST00000562298 GABBR2O75899 941 aa17.43■□□□□ 0.38
VPS9D1-AS1-201ENST00000562298 EPHX1P07099 455 aa17.43■□□□□ 0.38
VPS9D1-AS1-201ENST00000562298 HLA-EP13747 358 aa17.43■□□□□ 0.38
VPS9D1-AS1-201ENST00000562298 HARS2P49590 506 aaKnown RBP17.43■□□□□ 0.38
VPS9D1-AS1-201ENST00000562298 SGSHP51688 502 aa17.43■□□□□ 0.38
VPS9D1-AS1-201ENST00000562298 LRMPQ12912 555 aa17.43■□□□□ 0.38
VPS9D1-AS1-201ENST00000562298 PKDCCQ504Y2 493 aa17.43■□□□□ 0.38
VPS9D1-AS1-201ENST00000562298 DCAF12L1Q5VU92 463 aa17.43■□□□□ 0.38
VPS9D1-AS1-201ENST00000562298 SPATA20Q8TB22 786 aa17.43■□□□□ 0.38
VPS9D1-AS1-201ENST00000562298 KCTD13Q8WZ19 329 aa17.43■□□□□ 0.38
VPS9D1-AS1-201ENST00000562298 CCDC34Q96HJ3 373 aa17.43■□□□□ 0.38
VPS9D1-AS1-201ENST00000562298 GSDMAQ96QA5 445 aa17.43■□□□□ 0.38
VPS9D1-AS1-201ENST00000562298 TSG101Q99816 390 aa17.43■□□□□ 0.38
VPS9D1-AS1-201ENST00000562298 MSRB2Q9Y3D2 182 aa17.43■□□□□ 0.38
VPS9D1-AS1-201ENST00000562298 HBS1LQ9Y450 684 aaKnown RBP17.43■□□□□ 0.38
VPS9D1-AS1-201ENST00000562298 DSPP15924 2871 aaKnown RBP17.43■□□□□ 0.38
VPS9D1-AS1-201ENST00000562298 PCNX2A6NKB5 2137 aa17.42■□□□□ 0.38
VPS9D1-AS1-201ENST00000562298 A0A1B0GTW7 788 aa17.42■□□□□ 0.38
VPS9D1-AS1-201ENST00000562298 METTL12A8MUP2 240 aa17.42■□□□□ 0.38
VPS9D1-AS1-201ENST00000562298 TIMM44O43615 452 aa17.42■□□□□ 0.38
VPS9D1-AS1-201ENST00000562298 SETSIPP0DME0 302 aa17.42■□□□□ 0.38
VPS9D1-AS1-201ENST00000562298 VDRP11473 427 aa17.42■□□□□ 0.38
VPS9D1-AS1-201ENST00000562298 OXTRP30559 389 aa17.42■□□□□ 0.38
VPS9D1-AS1-201ENST00000562298 DAOAP59103 153 aa17.42■□□□□ 0.38
VPS9D1-AS1-201ENST00000562298 YWHAEP62258 255 aaKnown RBP17.42■□□□□ 0.38
VPS9D1-AS1-201ENST00000562298 E2F5Q15329 346 aa17.42■□□□□ 0.38
VPS9D1-AS1-201ENST00000562298 NAXDQ8IW45 347 aa17.42■□□□□ 0.38
VPS9D1-AS1-201ENST00000562298 SIX6OS1Q8N1H7 587 aa17.42■□□□□ 0.38
VPS9D1-AS1-201ENST00000562298 SCML4Q8N228 414 aa17.42■□□□□ 0.38
VPS9D1-AS1-201ENST00000562298 CHCHD4Q8N4Q1 142 aa17.42■□□□□ 0.38
VPS9D1-AS1-201ENST00000562298 ENGASEQ8NFI3 743 aa17.42■□□□□ 0.38
VPS9D1-AS1-201ENST00000562298 RNF139Q8WU17 664 aa17.42■□□□□ 0.38
VPS9D1-AS1-201ENST00000562298 CYB5D2Q8WUJ1 264 aa17.42■□□□□ 0.38
VPS9D1-AS1-201ENST00000562298 TFAP2BQ92481 460 aa17.42■□□□□ 0.38
VPS9D1-AS1-201ENST00000562298 MIR1-1HGQ9H1L0 117 aa17.42■□□□□ 0.38
VPS9D1-AS1-201ENST00000562298 TMEM245Q9H330 911 aa17.42■□□□□ 0.38
VPS9D1-AS1-201ENST00000562298 CNGB3Q9NQW8 809 aa17.42■□□□□ 0.38
VPS9D1-AS1-201ENST00000562298 ABCC13Q9NSE7 274 aa17.42■□□□□ 0.38
VPS9D1-AS1-201ENST00000562298 ARMCX3Q9UH62 379 aaPredicted RBP17.42■□□□□ 0.38
VPS9D1-AS1-201ENST00000562298 CACNA1EQ15878 2313 aa17.42■□□□□ 0.38
VPS9D1-AS1-201ENST00000562298 FAM221BA6H8Z2 402 aa17.41■□□□□ 0.38
VPS9D1-AS1-201ENST00000562298 H0Y626 953 aa17.41■□□□□ 0.38
VPS9D1-AS1-201ENST00000562298 TRIM16O95361 564 aa17.41■□□□□ 0.38
VPS9D1-AS1-201ENST00000562298 ACADMP11310 421 aa17.41■□□□□ 0.38
VPS9D1-AS1-201ENST00000562298 LCP1P13796 627 aa17.41■□□□□ 0.38
VPS9D1-AS1-201ENST00000562298 BNC1Q01954 994 aa17.41■□□□□ 0.38
VPS9D1-AS1-201ENST00000562298 ARID5AQ03989 594 aa17.41■□□□□ 0.38
VPS9D1-AS1-201ENST00000562298 LRRC63Q05C16 580 aa17.41■□□□□ 0.38
VPS9D1-AS1-201ENST00000562298 CAMK2GQ13555 558 aaPredicted RBP17.41■□□□□ 0.38
VPS9D1-AS1-201ENST00000562298 HNRNPDQ14103 355 aaKnown RBP17.41■□□□□ 0.38
VPS9D1-AS1-201ENST00000562298 TRIP6Q15654 476 aaKnown RBP17.41■□□□□ 0.38
VPS9D1-AS1-201ENST00000562298 PTPRNQ16849 979 aa17.41■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms