RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 CPXM2Q8N436 756 aa12.17□□□□□ -0.46
USP3-220ENST00000561381 MINDY1Q8N5J2 469 aa12.17□□□□□ -0.46
USP3-220ENST00000561381 UBR7Q8N806 425 aa12.17□□□□□ -0.46
USP3-220ENST00000561381 RBBP8NLQ8NC74 664 aaPredicted RBP12.17□□□□□ -0.46
USP3-220ENST00000561381 ENGASEQ8NFI3 743 aa12.17□□□□□ -0.46
USP3-220ENST00000561381 DDI1Q8WTU0 396 aa12.17□□□□□ -0.46
USP3-220ENST00000561381 EDEM1Q92611 657 aa12.17□□□□□ -0.46
USP3-220ENST00000561381 SLC35C1Q96A29 364 aa12.17□□□□□ -0.46
USP3-220ENST00000561381 ZNF419Q96HQ0 510 aaPredicted RBP12.17□□□□□ -0.46
USP3-220ENST00000561381 SCNM1Q9BWG6 230 aa12.17□□□□□ -0.46
USP3-220ENST00000561381 PRDM16Q9HAZ2 1276 aa12.17□□□□□ -0.46
USP3-220ENST00000561381 LRRC4Q9HBW1 653 aa12.17□□□□□ -0.46
USP3-220ENST00000561381 RMND1Q9NWS8 449 aa12.17□□□□□ -0.46
USP3-220ENST00000561381 ELOVL2Q9NXB9 296 aa12.17□□□□□ -0.46
USP3-220ENST00000561381 YJEFN3A6XGL0 299 aa12.16□□□□□ -0.46
USP3-220ENST00000561381 KCNJ18B7U540 433 aa12.16□□□□□ -0.46
USP3-220ENST00000561381 E7ENQ6 273 aa12.16□□□□□ -0.46
USP3-220ENST00000561381 O00370 1275 aa12.16□□□□□ -0.46
USP3-220ENST00000561381 MSI1O43347 362 aaKnown RBP12.16□□□□□ -0.46
USP3-220ENST00000561381 TSPAN3O60637 253 aa12.16□□□□□ -0.46
USP3-220ENST00000561381 CALCAP01258 141 aa12.16□□□□□ -0.46
USP3-220ENST00000561381 CYBBP04839 570 aa12.16□□□□□ -0.46
USP3-220ENST00000561381 PROS1P07225 676 aa12.16□□□□□ -0.46
USP3-220ENST00000561381 CD6P30203 668 aa12.16□□□□□ -0.46
USP3-220ENST00000561381 SLC8A3P57103 927 aa12.16□□□□□ -0.46
USP3-220ENST00000561381 BST2Q10589 180 aaKnown RBP12.16□□□□□ -0.46
USP3-220ENST00000561381 STARD3Q14849 445 aa12.16□□□□□ -0.46
USP3-220ENST00000561381 PLEKHG6Q3KR16 790 aa12.16□□□□□ -0.46
USP3-220ENST00000561381 COBLL1Q53SF7 1204 aa12.16□□□□□ -0.46
USP3-220ENST00000561381 BSPRYQ5W0U4 402 aa12.16□□□□□ -0.46
USP3-220ENST00000561381 ISM2Q6H9L7 571 aa12.16□□□□□ -0.46
USP3-220ENST00000561381 ADGRD1Q6QNK2 874 aa12.16□□□□□ -0.46
USP3-220ENST00000561381 ANKS1BQ7Z6G8 1248 aa12.16□□□□□ -0.46
USP3-220ENST00000561381 CACUL1Q86Y37 369 aa12.16□□□□□ -0.46
USP3-220ENST00000561381 HDDC3Q8N4P3 179 aa12.16□□□□□ -0.46
USP3-220ENST00000561381 SPATA20Q8TB22 786 aa12.16□□□□□ -0.46
USP3-220ENST00000561381 TFAP2BQ92481 460 aa12.16□□□□□ -0.46
USP3-220ENST00000561381 PLD4Q96BZ4 506 aa12.16□□□□□ -0.46
USP3-220ENST00000561381 TOE1Q96GM8 510 aaKnown RBP12.16□□□□□ -0.46
USP3-220ENST00000561381 CCDC34Q96HJ3 373 aa12.16□□□□□ -0.46
USP3-220ENST00000561381 IPO9Q96P70 1041 aaKnown RBP12.16□□□□□ -0.46
USP3-220ENST00000561381 GSDMAQ96QA5 445 aa12.16□□□□□ -0.46
USP3-220ENST00000561381 TSG101Q99816 390 aa12.16□□□□□ -0.46
USP3-220ENST00000561381 ZSWIM1Q9BR11 485 aa12.16□□□□□ -0.46
USP3-220ENST00000561381 ADAM33Q9BZ11 813 aa12.16□□□□□ -0.46
USP3-220ENST00000561381 CIPCQ9C0C6 399 aa12.16□□□□□ -0.46
USP3-220ENST00000561381 SLC32A1Q9H598 525 aa12.16□□□□□ -0.46
USP3-220ENST00000561381 USP36Q9P275 1121 aaKnown RBP12.16□□□□□ -0.46
USP3-220ENST00000561381 HESX1Q9UBX0 185 aa12.16□□□□□ -0.46
USP3-220ENST00000561381 RALYQ9UKM9 306 aaKnown RBP12.16□□□□□ -0.46
USP3-220ENST00000561381 CFAP47Q6ZTR5 3102 aa12.16□□□□□ -0.46
USP3-220ENST00000561381 UPK3BL1B0FP48 263 aa12.15□□□□□ -0.46
USP3-220ENST00000561381 UPK3BL2E5RIL1 263 aa12.15□□□□□ -0.46
USP3-220ENST00000561381 RNF225M0QZC1 329 aaPredicted RBP12.15□□□□□ -0.46
USP3-220ENST00000561381 PIK3R2O00459 728 aa12.15□□□□□ -0.46
USP3-220ENST00000561381 HYAL3O43820 417 aaPredicted RBP12.15□□□□□ -0.46
USP3-220ENST00000561381 SYNCRIPO60506 623 aaKnown RBP12.15□□□□□ -0.46
USP3-220ENST00000561381 OPHN1O60890 802 aa12.15□□□□□ -0.46
USP3-220ENST00000561381 VDRP11473 427 aa12.15□□□□□ -0.46
USP3-220ENST00000561381 NCAM1P13591 858 aa12.15□□□□□ -0.46
USP3-220ENST00000561381 HLA-EP13747 358 aa12.15□□□□□ -0.46
USP3-220ENST00000561381 LCP1P13796 627 aa12.15□□□□□ -0.46
USP3-220ENST00000561381 CD59P13987 128 aa12.15□□□□□ -0.46
USP3-220ENST00000561381 HOXD9P28356 352 aaPredicted RBP12.15□□□□□ -0.46
USP3-220ENST00000561381 RGS7P49802 495 aa12.15□□□□□ -0.46
USP3-220ENST00000561381 TPMTP51580 245 aa12.15□□□□□ -0.46
USP3-220ENST00000561381 SGSHP51688 502 aa12.15□□□□□ -0.46
USP3-220ENST00000561381 COPAP53621 1224 aa12.15□□□□□ -0.46
USP3-220ENST00000561381 SIM1P81133 766 aaPredicted RBP12.15□□□□□ -0.46
USP3-220ENST00000561381 PKDCCQ504Y2 493 aa12.15□□□□□ -0.46
USP3-220ENST00000561381 TMPRSS6Q8IU80 811 aa12.15□□□□□ -0.46
USP3-220ENST00000561381 CYB5D2Q8WUJ1 264 aa12.15□□□□□ -0.46
USP3-220ENST00000561381 UCMAQ8WVF2 138 aa12.15□□□□□ -0.46
USP3-220ENST00000561381 KAT5Q92993 513 aa12.15□□□□□ -0.46
USP3-220ENST00000561381 SMARCE1Q969G3 411 aa12.15□□□□□ -0.46
USP3-220ENST00000561381 CAMK1GQ96NX5 476 aa12.15□□□□□ -0.46
USP3-220ENST00000561381 GPR174Q9BXC1 333 aa12.15□□□□□ -0.46
USP3-220ENST00000561381 FAM124BQ9H5Z6 455 aaPredicted RBP12.15□□□□□ -0.46
USP3-220ENST00000561381 ITM2CQ9NQX7 267 aa12.15□□□□□ -0.46
USP3-220ENST00000561381 WSB2Q9NYS7 404 aaPredicted RBP12.15□□□□□ -0.46
USP3-220ENST00000561381 ARMCX3Q9UH62 379 aaPredicted RBP12.15□□□□□ -0.46
USP3-220ENST00000561381 CKAP5Q14008 2032 aa12.15□□□□□ -0.47
USP3-220ENST00000561381 NUMA1Q14980 2115 aa12.14□□□□□ -0.47
USP3-220ENST00000561381 ZFHX4Q86UP3 3567 aa12.14□□□□□ -0.47
USP3-220ENST00000561381 TK2O00142 265 aa12.14□□□□□ -0.47
USP3-220ENST00000561381 NPC1O15118 1278 aa12.14□□□□□ -0.47
USP3-220ENST00000561381 GJB3O75712 270 aa12.14□□□□□ -0.47
USP3-220ENST00000561381 EPHX1P07099 455 aa12.14□□□□□ -0.47
USP3-220ENST00000561381 HLA-FP30511 346 aa12.14□□□□□ -0.47
USP3-220ENST00000561381 FMO5P49326 533 aa12.14□□□□□ -0.47
USP3-220ENST00000561381 HARS2P49590 506 aaKnown RBP12.14□□□□□ -0.47
USP3-220ENST00000561381 DAOAP59103 153 aa12.14□□□□□ -0.47
USP3-220ENST00000561381 YWHAEP62258 255 aaKnown RBP12.14□□□□□ -0.47
USP3-220ENST00000561381 SYCP2LQ5T4T6 812 aa12.14□□□□□ -0.47
USP3-220ENST00000561381 PMF1Q6P1K2 205 aa12.14□□□□□ -0.47
USP3-220ENST00000561381 TMEM270Q6UE05 265 aa12.14□□□□□ -0.47
USP3-220ENST00000561381 RABEPKQ7Z6M1 372 aa12.14□□□□□ -0.47
USP3-220ENST00000561381 METTL3Q86U44 580 aaKnown RBP12.14□□□□□ -0.47
USP3-220ENST00000561381 SIX6OS1Q8N1H7 587 aa12.14□□□□□ -0.47
USP3-220ENST00000561381 ZNF366Q8N895 744 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms