RNA–Protein interactions for RNA: ENST00000561026.5

SNX1-213, Transcript of sorting nexin 1, humanhuman

TSL 1 (best) BASIC

Gene SNX1, Length 1,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-213ENST00000561026 RABEPKQ7Z6M1 372 aa16.93■□□□□ 0.3
SNX1-213ENST00000561026 TRIML1Q8N9V2 468 aa16.93■□□□□ 0.3
SNX1-213ENST00000561026 RBBP8NLQ8NC74 664 aaPredicted RBP16.93■□□□□ 0.3
SNX1-213ENST00000561026 NELFBQ8WX92 580 aa16.93■□□□□ 0.3
SNX1-213ENST00000561026 KAT5Q92993 513 aa16.93■□□□□ 0.3
SNX1-213ENST00000561026 HSPA12BQ96MM6 686 aa16.93■□□□□ 0.3
SNX1-213ENST00000561026 MKRN2Q9H000 416 aaKnown RBP16.93■□□□□ 0.3
SNX1-213ENST00000561026 CAPN10Q9HC96 672 aa16.93■□□□□ 0.3
SNX1-213ENST00000561026 CD93Q9NPY3 652 aa16.93■□□□□ 0.3
SNX1-213ENST00000561026 WDR3Q9UNX4 943 aaKnown RBP eCLIP16.93■□□□□ 0.3
SNX1-213ENST00000561026 ASCC3Q8N3C0 2202 aaKnown RBP16.93■□□□□ 0.3
SNX1-213ENST00000561026 BICDL2A1A5D9 508 aa16.92■□□□□ 0.3
SNX1-213ENST00000561026 SYNCRIPO60506 623 aaKnown RBP16.92■□□□□ 0.3
SNX1-213ENST00000561026 NDUFS2O75306 463 aa16.92■□□□□ 0.3
SNX1-213ENST00000561026 HOXD9P28356 352 aaPredicted RBP16.92■□□□□ 0.3
SNX1-213ENST00000561026 RGS7P49802 495 aa16.92■□□□□ 0.3
SNX1-213ENST00000561026 ZNF445P59923 1031 aa16.92■□□□□ 0.3
SNX1-213ENST00000561026 GFPT1Q06210 699 aaPredicted RBP16.92■□□□□ 0.3
SNX1-213ENST00000561026 MORC3Q14149 939 aa16.92■□□□□ 0.3
SNX1-213ENST00000561026 ZNF234Q14588 700 aa16.92■□□□□ 0.3
SNX1-213ENST00000561026 ADGRF1Q5T601 910 aa16.92■□□□□ 0.3
SNX1-213ENST00000561026 TMEM215Q68D42 235 aa16.92■□□□□ 0.3
SNX1-213ENST00000561026 SORCS1Q8WY21 1168 aa16.92■□□□□ 0.3
SNX1-213ENST00000561026 IRGQQ8WZA9 623 aa16.92■□□□□ 0.3
SNX1-213ENST00000561026 CIPCQ9C0C6 399 aa16.92■□□□□ 0.3
SNX1-213ENST00000561026 PRDM16Q9HAZ2 1276 aa16.92■□□□□ 0.3
SNX1-213ENST00000561026 FSCN3Q9NQT6 498 aa16.92■□□□□ 0.3
SNX1-213ENST00000561026 ITM2CQ9NQX7 267 aa16.92■□□□□ 0.3
SNX1-213ENST00000561026 USP36Q9P275 1121 aaKnown RBP16.92■□□□□ 0.3
SNX1-213ENST00000561026 M0QYV0 167 aa16.91■□□□□ 0.3
SNX1-213ENST00000561026 MSI1O43347 362 aaKnown RBP16.91■□□□□ 0.3
SNX1-213ENST00000561026 TSPAN3O60637 253 aa16.91■□□□□ 0.3
SNX1-213ENST00000561026 LATS1O95835 1130 aa16.91■□□□□ 0.3
SNX1-213ENST00000561026 BRD2P25440 801 aaKnown RBP16.91■□□□□ 0.3
SNX1-213ENST00000561026 CD6P30203 668 aa16.91■□□□□ 0.3
SNX1-213ENST00000561026 GCNT1Q02742 428 aa16.91■□□□□ 0.3
SNX1-213ENST00000561026 ZNF252P-AS1Q0IIN9 211 aa16.91■□□□□ 0.3
SNX1-213ENST00000561026 STILQ15468 1287 aa16.91■□□□□ 0.3
SNX1-213ENST00000561026 MSANTD2Q6P1R3 559 aa16.91■□□□□ 0.3
SNX1-213ENST00000561026 RRAGAQ7L523 313 aa16.91■□□□□ 0.3
SNX1-213ENST00000561026 TMPRSS6Q8IU80 811 aa16.91■□□□□ 0.3
SNX1-213ENST00000561026 EHBP1Q8NDI1 1231 aa16.91■□□□□ 0.3
SNX1-213ENST00000561026 FOXJ1Q92949 421 aa16.91■□□□□ 0.3
SNX1-213ENST00000561026 TMA16Q96EY4 203 aaKnown RBP16.91■□□□□ 0.3
SNX1-213ENST00000561026 HSFY1Q96LI6 401 aa16.91■□□□□ 0.3
SNX1-213ENST00000561026 PIK3R2O00459 728 aa16.9■□□□□ 0.3
SNX1-213ENST00000561026 BIN1O00499 593 aa16.9■□□□□ 0.3
SNX1-213ENST00000561026 GNA14O95837 355 aa16.9■□□□□ 0.3
SNX1-213ENST00000561026 NCAM1P13591 858 aa16.9■□□□□ 0.3
SNX1-213ENST00000561026 PRKCHP24723 683 aa16.9■□□□□ 0.3
SNX1-213ENST00000561026 HLA-FP30511 346 aa16.9■□□□□ 0.3
SNX1-213ENST00000561026 ATXN3P54252 364 aaPredicted RBP16.9■□□□□ 0.3
SNX1-213ENST00000561026 KCNH2Q12809 1159 aa16.9■□□□□ 0.3
SNX1-213ENST00000561026 SEMA3BQ13214 749 aa16.9■□□□□ 0.3
SNX1-213ENST00000561026 ST3GAL2Q16842 350 aa16.9■□□□□ 0.3
SNX1-213ENST00000561026 SYCP2LQ5T4T6 812 aa16.9■□□□□ 0.3
SNX1-213ENST00000561026 ARHGEF19Q8IW93 802 aa16.9■□□□□ 0.3
SNX1-213ENST00000561026 TRIM59Q8IWR1 403 aa16.9■□□□□ 0.3
SNX1-213ENST00000561026 DEFB124Q8NES8 71 aa16.9■□□□□ 0.3
SNX1-213ENST00000561026 TOE1Q96GM8 510 aaKnown RBP16.9■□□□□ 0.3
SNX1-213ENST00000561026 GTPBP2Q9BX10 602 aaKnown RBP16.9■□□□□ 0.3
SNX1-213ENST00000561026 WSB2Q9NYS7 404 aaPredicted RBP16.9■□□□□ 0.3
SNX1-213ENST00000561026 CTNND2Q9UQB3 1225 aa16.9■□□□□ 0.3
SNX1-213ENST00000561026 FRYQ5TBA9 3013 aa16.9■□□□□ 0.3
SNX1-213ENST00000561026 CEP192Q8TEP8 1941 aa16.9■□□□□ 0.3
SNX1-213ENST00000561026 UPK3BL1B0FP48 263 aa16.89■□□□□ 0.3
SNX1-213ENST00000561026 UPK3BL2E5RIL1 263 aa16.89■□□□□ 0.3
SNX1-213ENST00000561026 ARHGAP33O14559 1287 aa16.89■□□□□ 0.3
SNX1-213ENST00000561026 GADD45BO75293 160 aaPredicted RBP16.89■□□□□ 0.3
SNX1-213ENST00000561026 KRT37O76014 449 aa16.89■□□□□ 0.3
SNX1-213ENST00000561026 CALCAP01258 141 aa16.89■□□□□ 0.3
SNX1-213ENST00000561026 IGLV3-27P01718 113 aa16.89■□□□□ 0.3
SNX1-213ENST00000561026 TPMTP51580 245 aa16.89■□□□□ 0.3
SNX1-213ENST00000561026 COPAP53621 1224 aa16.89■□□□□ 0.3
SNX1-213ENST00000561026 MARSP56192 900 aaKnown RBP16.89■□□□□ 0.3
SNX1-213ENST00000561026 STX17P56962 302 aa16.89■□□□□ 0.3
SNX1-213ENST00000561026 ARID5AQ03989 594 aa16.89■□□□□ 0.3
SNX1-213ENST00000561026 SERPINA13PQ6UXR4 307 aa16.89■□□□□ 0.3
SNX1-213ENST00000561026 RGL4Q8IZJ4 473 aa16.89■□□□□ 0.3
SNX1-213ENST00000561026 CLEC4CQ8WTT0 213 aa16.89■□□□□ 0.3
SNX1-213ENST00000561026 PRCCQ92733 491 aaPredicted RBP16.89■□□□□ 0.3
SNX1-213ENST00000561026 SIPA1Q96FS4 1042 aa16.89■□□□□ 0.3
SNX1-213ENST00000561026 WASF3Q9UPY6 502 aa16.89■□□□□ 0.3
SNX1-213ENST00000561026 USP24Q9UPU5 2620 aa16.89■□□□□ 0.3
SNX1-213ENST00000561026 CACNA1EQ15878 2313 aa16.89■□□□□ 0.29
SNX1-213ENST00000561026 PCNX2A6NKB5 2137 aa16.89■□□□□ 0.29
SNX1-213ENST00000561026 KCNJ18B7U540 433 aa16.89■□□□□ 0.29
SNX1-213ENST00000561026 FBXO21O94952 628 aa16.89■□□□□ 0.29
SNX1-213ENST00000561026 LTFP02788 710 aa16.89■□□□□ 0.29
SNX1-213ENST00000561026 EPHX1P07099 455 aa16.89■□□□□ 0.29
SNX1-213ENST00000561026 SYPP08247 313 aa16.89■□□□□ 0.29
SNX1-213ENST00000561026 RING1Q06587 406 aa16.89■□□□□ 0.29
SNX1-213ENST00000561026 PAK1Q13153 545 aa16.89■□□□□ 0.29
SNX1-213ENST00000561026 WDR45BQ5MNZ6 344 aa16.89■□□□□ 0.29
SNX1-213ENST00000561026 MPP7Q5T2T1 576 aa16.89■□□□□ 0.29
SNX1-213ENST00000561026 NUGGCQ68CJ6 796 aa16.89■□□□□ 0.29
SNX1-213ENST00000561026 KIAA0907Q7Z7F0 614 aaPredicted RBP16.89■□□□□ 0.29
SNX1-213ENST00000561026 PIP4P1Q86T03 277 aa16.89■□□□□ 0.29
SNX1-213ENST00000561026 ADIPOR2Q86V24 386 aa16.89■□□□□ 0.29
SNX1-213ENST00000561026 UNC45BQ8IWX7 931 aa16.89■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms