RNA–Protein interactions for RNA: ENST00000559886.1

HERC1-205, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase family member 1, humanhuman

TSL 1 (best)

Gene HERC1, Length 2,462 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC1-205ENST00000559886 RNF157Q96PX1 679 aa12.63□□□□□ -0.39
HERC1-205ENST00000559886 NACA2Q9H009 215 aa12.63□□□□□ -0.39
HERC1-205ENST00000559886 RNF38Q9H0F5 515 aa12.63□□□□□ -0.39
HERC1-205ENST00000559886 OSBPL2Q9H1P3 480 aa12.63□□□□□ -0.39
HERC1-205ENST00000559886 CWC15Q9P013 229 aaKnown RBP12.63□□□□□ -0.39
HERC1-205ENST00000559886 GOLGA6L10A0A0M3HER8 536 aa12.63□□□□□ -0.39
HERC1-205ENST00000559886 FGF19O95750 216 aa12.63□□□□□ -0.39
HERC1-205ENST00000559886 OLFM2O95897 454 aa12.63□□□□□ -0.39
HERC1-205ENST00000559886 ZNF697Q5TEC3 545 aa12.63□□□□□ -0.39
HERC1-205ENST00000559886 BBS12Q6ZW61 710 aa12.63□□□□□ -0.39
HERC1-205ENST00000559886 PRELID2Q8N945 189 aa12.63□□□□□ -0.39
HERC1-205ENST00000559886 LEMD2Q8NC56 503 aa12.63□□□□□ -0.39
HERC1-205ENST00000559886 NOA1Q8NC60 698 aaKnown RBP12.63□□□□□ -0.39
HERC1-205ENST00000559886 VN1R2Q8NFZ6 395 aa12.63□□□□□ -0.39
HERC1-205ENST00000559886 MRPS31Q92665 395 aaKnown RBP12.63□□□□□ -0.39
HERC1-205ENST00000559886 ZNF707Q96C28 371 aaPredicted RBP12.63□□□□□ -0.39
HERC1-205ENST00000559886 DNMT3BQ9UBC3 853 aaKnown RBP12.63□□□□□ -0.39
HERC1-205ENST00000559886 OR12D3Q9UGF7 316 aa12.63□□□□□ -0.39
HERC1-205ENST00000559886 TRIOBPQ9H2D6 2365 aa12.62□□□□□ -0.39
HERC1-205ENST00000559886 C2orf16Q68DN1 1984 aa12.62□□□□□ -0.39
HERC1-205ENST00000559886 DOCK4Q8N1I0 1966 aa12.62□□□□□ -0.39
HERC1-205ENST00000559886 CCDC195A0A1B0GUA6 201 aa12.62□□□□□ -0.39
HERC1-205ENST00000559886 CST8O60676 142 aa12.62□□□□□ -0.39
HERC1-205ENST00000559886 PAGE1O75459 146 aa12.62□□□□□ -0.39
HERC1-205ENST00000559886 APOEP02649 317 aa12.62□□□□□ -0.39
HERC1-205ENST00000559886 MYL4P12829 197 aa12.62□□□□□ -0.39
HERC1-205ENST00000559886 GOT1P17174 413 aa12.62□□□□□ -0.39
HERC1-205ENST00000559886 ARL4AP40617 200 aa12.62□□□□□ -0.39
HERC1-205ENST00000559886 ZNF135P52742 658 aaPredicted RBP12.62□□□□□ -0.39
HERC1-205ENST00000559886 COG7P83436 770 aa12.62□□□□□ -0.39
HERC1-205ENST00000559886 TFDP2Q14188 446 aa12.62□□□□□ -0.39
HERC1-205ENST00000559886 CYP1B1Q16678 543 aa12.62□□□□□ -0.39
HERC1-205ENST00000559886 TXNDC8Q6A555 127 aa12.62□□□□□ -0.39
HERC1-205ENST00000559886 MMGT1Q8N4V1 131 aa12.62□□□□□ -0.39
HERC1-205ENST00000559886 PCDH19Q8TAB3 1148 aa12.62□□□□□ -0.39
HERC1-205ENST00000559886 CSPG4P5Q96PW8 444 aa12.62□□□□□ -0.39
HERC1-205ENST00000559886 GCNAQ96QF7 691 aa12.62□□□□□ -0.39
HERC1-205ENST00000559886 MAK16Q9BXY0 300 aaKnown RBP12.62□□□□□ -0.39
HERC1-205ENST00000559886 NSUN3Q9H649 340 aaKnown RBP12.62□□□□□ -0.39
HERC1-205ENST00000559886 HELZP42694 1942 aaKnown RBP12.62□□□□□ -0.39
HERC1-205ENST00000559886 A0A1W2PRU2 124 aa12.62□□□□□ -0.39
HERC1-205ENST00000559886 FAM72CH0Y354 149 aa12.62□□□□□ -0.39
HERC1-205ENST00000559886 NRG2O14511 850 aaPredicted RBP12.62□□□□□ -0.39
HERC1-205ENST00000559886 RHOP08100 348 aa12.62□□□□□ -0.39
HERC1-205ENST00000559886 PFKLP17858 780 aa12.62□□□□□ -0.39
HERC1-205ENST00000559886 GTF2F1P35269 517 aaKnown RBP eCLIP12.62□□□□□ -0.39
HERC1-205ENST00000559886 CCR2P41597 374 aa12.62□□□□□ -0.39
HERC1-205ENST00000559886 HCAR3P49019 387 aa12.62□□□□□ -0.39
HERC1-205ENST00000559886 TUBB4BP68371 445 aa12.62□□□□□ -0.39
HERC1-205ENST00000559886 CYP4F8P98187 520 aa12.62□□□□□ -0.39
HERC1-205ENST00000559886 FAM72AQ5TYM5 149 aa12.62□□□□□ -0.39
HERC1-205ENST00000559886 FAM72DQ6L9T8 149 aa12.62□□□□□ -0.39
HERC1-205ENST00000559886 FAM72BQ86X60 149 aa12.62□□□□□ -0.39
HERC1-205ENST00000559886 RFX6Q8HWS3 928 aa12.62□□□□□ -0.39
HERC1-205ENST00000559886 PQLC3Q8N755 202 aa12.62□□□□□ -0.39
HERC1-205ENST00000559886 BTN2A3PQ96KV6 586 aa12.62□□□□□ -0.39
HERC1-205ENST00000559886 C1orf74Q96LT6 269 aa12.62□□□□□ -0.39
HERC1-205ENST00000559886 SLC22A12Q96S37 553 aa12.62□□□□□ -0.39
HERC1-205ENST00000559886 KLF16Q9BXK1 252 aaPredicted RBP12.62□□□□□ -0.39
HERC1-205ENST00000559886 ATXN3LQ9H3M9 355 aa12.62□□□□□ -0.39
HERC1-205ENST00000559886 TRPC7Q9HCX4 862 aa12.62□□□□□ -0.39
HERC1-205ENST00000559886 PRRC2BQ5JSZ5 2229 aaKnown RBP12.61□□□□□ -0.39
HERC1-205ENST00000559886 SPDYE4A6NLX3 237 aa12.61□□□□□ -0.39
HERC1-205ENST00000559886 H3BRJ5 948 aa12.61□□□□□ -0.39
HERC1-205ENST00000559886 CREB3O43889 395 aa12.61□□□□□ -0.39
HERC1-205ENST00000559886 HMBSP08397 361 aa12.61□□□□□ -0.39
HERC1-205ENST00000559886 MTA1Q13330 715 aa12.61□□□□□ -0.39
HERC1-205ENST00000559886 NUGGCQ68CJ6 796 aa12.61□□□□□ -0.39
HERC1-205ENST00000559886 SLC9A4Q6AI14 798 aa12.61□□□□□ -0.39
HERC1-205ENST00000559886 TMEM184AQ6ZMB5 413 aa12.61□□□□□ -0.39
HERC1-205ENST00000559886 PDZD4Q76G19 769 aaPredicted RBP12.61□□□□□ -0.39
HERC1-205ENST00000559886 UNC45BQ8IWX7 931 aa12.61□□□□□ -0.39
HERC1-205ENST00000559886 ATP6V0D2Q8N8Y2 350 aa12.61□□□□□ -0.39
HERC1-205ENST00000559886 C12orf50Q8NA57 414 aaPredicted RBP12.61□□□□□ -0.39
HERC1-205ENST00000559886 SHKBP1Q8TBC3 707 aa12.61□□□□□ -0.39
HERC1-205ENST00000559886 CYP2S1Q96SQ9 504 aa12.61□□□□□ -0.39
HERC1-205ENST00000559886 EPAS1Q99814 870 aa12.61□□□□□ -0.39
HERC1-205ENST00000559886 PRDM16Q9HAZ2 1276 aa12.61□□□□□ -0.39
HERC1-205ENST00000559886 HOMER3Q9NSC5 361 aa12.61□□□□□ -0.39
HERC1-205ENST00000559886 DZANK1Q9NVP4 752 aa12.61□□□□□ -0.39
HERC1-205ENST00000559886 SLC12A6Q9UHW9 1150 aa12.61□□□□□ -0.39
HERC1-205ENST00000559886 XPO7Q9UIA9 1087 aaKnown RBP12.61□□□□□ -0.39
HERC1-205ENST00000559886 R3HDM2Q9Y2K5 976 aaKnown RBP12.61□□□□□ -0.39
HERC1-205ENST00000559886 REV3LO60673 3130 aa12.61□□□□□ -0.39
HERC1-205ENST00000559886 EEF2KO00418 725 aaKnown RBP12.61□□□□□ -0.39
HERC1-205ENST00000559886 PHF2O75151 1096 aa12.61□□□□□ -0.39
HERC1-205ENST00000559886 MOCS2O96007 188 aaPredicted RBP12.61□□□□□ -0.39
HERC1-205ENST00000559886 HDCP19113 662 aa12.61□□□□□ -0.39
HERC1-205ENST00000559886 KCNQ1P51787 676 aa12.61□□□□□ -0.39
HERC1-205ENST00000559886 MLLT6P55198 1093 aaPredicted RBP12.61□□□□□ -0.39
HERC1-205ENST00000559886 NRG1Q02297 640 aaPredicted RBP12.61□□□□□ -0.39
HERC1-205ENST00000559886 HYAL1Q12794 435 aa12.61□□□□□ -0.39
HERC1-205ENST00000559886 DPYSQ14117 519 aa12.61□□□□□ -0.39
HERC1-205ENST00000559886 RFX8Q6ZV50 586 aa12.61□□□□□ -0.39
HERC1-205ENST00000559886 ARL14EPQ8N8R7 260 aaPredicted RBP12.61□□□□□ -0.39
HERC1-205ENST00000559886 TRAF3IP1Q8TDR0 691 aaPredicted RBP12.61□□□□□ -0.39
HERC1-205ENST00000559886 PLD4Q96BZ4 506 aa12.61□□□□□ -0.39
HERC1-205ENST00000559886 ZFRQ96KR1 1074 aaKnown RBP12.61□□□□□ -0.39
HERC1-205ENST00000559886 SIK2Q9H0K1 926 aa12.61□□□□□ -0.39
HERC1-205ENST00000559886 DDX47Q9H0S4 455 aaKnown RBP12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms