RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 B3GNT6Q6ZMB0 384 aa11.67□□□□□ -0.54
LDLR-208ENST00000558518 DDX51Q8N8A6 666 aaKnown RBP eCLIP11.67□□□□□ -0.54
LDLR-208ENST00000558518 GRIN3AQ8TCU5 1115 aa11.67□□□□□ -0.54
LDLR-208ENST00000558518 TFB1MQ8WVM0 346 aaKnown RBP11.67□□□□□ -0.54
LDLR-208ENST00000558518 TMIGD2Q96BF3 282 aa11.67□□□□□ -0.54
LDLR-208ENST00000558518 RCN3Q96D15 328 aa11.67□□□□□ -0.54
LDLR-208ENST00000558518 ZNF778Q96MU6 729 aa11.67□□□□□ -0.54
LDLR-208ENST00000558518 C7orf26Q96N11 449 aa11.67□□□□□ -0.54
LDLR-208ENST00000558518 OR52B2Q96RD2 323 aa11.67□□□□□ -0.54
LDLR-208ENST00000558518 COG4Q9H9E3 785 aa11.67□□□□□ -0.54
LDLR-208ENST00000558518 ZNF302Q9NR11 478 aa11.67□□□□□ -0.54
LDLR-208ENST00000558518 UBAP1Q9NZ09 502 aa11.67□□□□□ -0.54
LDLR-208ENST00000558518 CDK5RAP2Q96SN8 1893 aa11.67□□□□□ -0.54
LDLR-208ENST00000558518 SLC15A5A6NIM6 579 aa11.67□□□□□ -0.54
LDLR-208ENST00000558518 B4GALT5O43286 388 aa11.67□□□□□ -0.54
LDLR-208ENST00000558518 XRCC1P18887 633 aaPredicted RBP11.67□□□□□ -0.54
LDLR-208ENST00000558518 CCND2P30279 289 aa11.67□□□□□ -0.54
LDLR-208ENST00000558518 NME5P56597 212 aa11.67□□□□□ -0.54
LDLR-208ENST00000558518 TFDP2Q14188 446 aa11.67□□□□□ -0.54
LDLR-208ENST00000558518 ITPRIPL1Q6GPH6 555 aa11.67□□□□□ -0.54
LDLR-208ENST00000558518 RNF135Q8IUD6 432 aa11.67□□□□□ -0.54
LDLR-208ENST00000558518 SAMD3Q8N6K7 520 aa11.67□□□□□ -0.54
LDLR-208ENST00000558518 ZFP28Q8NHY6 868 aa11.67□□□□□ -0.54
LDLR-208ENST00000558518 CDKL2Q92772 493 aa11.67□□□□□ -0.54
LDLR-208ENST00000558518 DTNBP1Q96EV8 351 aa11.67□□□□□ -0.54
LDLR-208ENST00000558518 LGMNQ99538 433 aa11.67□□□□□ -0.54
LDLR-208ENST00000558518 ZNF277Q9NRM2 450 aaPredicted RBP11.67□□□□□ -0.54
LDLR-208ENST00000558518 SNX13Q9Y5W8 968 aa11.67□□□□□ -0.54
LDLR-208ENST00000558518 SDR42E2A6NKP2 422 aa11.66□□□□□ -0.54
LDLR-208ENST00000558518 CRTAMO95727 393 aa11.66□□□□□ -0.54
LDLR-208ENST00000558518 TRUB2O95900 331 aaKnown RBP11.66□□□□□ -0.54
LDLR-208ENST00000558518 ITGBL1O95965 494 aaPredicted RBP11.66□□□□□ -0.54
LDLR-208ENST00000558518 CHRNGP07510 517 aa11.66□□□□□ -0.54
LDLR-208ENST00000558518 TFE3P19532 575 aaPredicted RBP11.66□□□□□ -0.54
LDLR-208ENST00000558518 MYLK3Q32MK0 819 aa11.66□□□□□ -0.54
LDLR-208ENST00000558518 ANGEL2Q5VTE6 544 aaKnown RBP11.66□□□□□ -0.54
LDLR-208ENST00000558518 HEATR6Q6AI08 1181 aaKnown RBP11.66□□□□□ -0.54
LDLR-208ENST00000558518 DRICH1Q6PGQ1 229 aaPredicted RBP11.66□□□□□ -0.54
LDLR-208ENST00000558518 CAND1Q86VP6 1230 aaKnown RBP11.66□□□□□ -0.54
LDLR-208ENST00000558518 MYO1HQ8N1T3 1032 aa11.66□□□□□ -0.54
LDLR-208ENST00000558518 DGCR14Q96DF8 476 aaKnown RBP11.66□□□□□ -0.54
LDLR-208ENST00000558518 POPDC2Q9HBU9 364 aa11.66□□□□□ -0.54
LDLR-208ENST00000558518 XPNPEP3Q9NQH7 507 aa11.66□□□□□ -0.54
LDLR-208ENST00000558518 PPP1R1BQ9UD71 204 aaPredicted RBP11.66□□□□□ -0.54
LDLR-208ENST00000558518 C10orf71Q711Q0 1435 aa11.66□□□□□ -0.54
LDLR-208ENST00000558518 KIF13BQ9NQT8 1826 aa11.66□□□□□ -0.54
LDLR-208ENST00000558518 KCNK1O00180 336 aa11.66□□□□□ -0.54
LDLR-208ENST00000558518 TPH1P17752 444 aa11.66□□□□□ -0.54
LDLR-208ENST00000558518 HOXA10P31260 410 aaPredicted RBP11.66□□□□□ -0.54
LDLR-208ENST00000558518 THOP1P52888 689 aa11.66□□□□□ -0.54
LDLR-208ENST00000558518 CYLC2Q14093 348 aaPredicted RBP11.66□□□□□ -0.54
LDLR-208ENST00000558518 TEDDM1Q5T9Z0 273 aa11.66□□□□□ -0.54
LDLR-208ENST00000558518 SLFN12LQ6IEE8 588 aa11.66□□□□□ -0.54
LDLR-208ENST00000558518 NPAS2Q99743 824 aa11.66□□□□□ -0.54
LDLR-208ENST00000558518 SSU72Q9NP77 194 aaKnown RBP11.66□□□□□ -0.54
LDLR-208ENST00000558518 CNTN3Q9P232 1028 aa11.66□□□□□ -0.54
LDLR-208ENST00000558518 AFG3L2Q9Y4W6 797 aa11.66□□□□□ -0.54
LDLR-208ENST00000558518 RPS6KL1Q9Y6S9 549 aa11.66□□□□□ -0.54
LDLR-208ENST00000558518 V9GYQ6 96 aa11.66□□□□□ -0.54
LDLR-208ENST00000558518 NHSQ6T4R5 1651 aa11.66□□□□□ -0.54
LDLR-208ENST00000558518 C3orf70A6NLC5 250 aaPredicted RBP11.66□□□□□ -0.54
LDLR-208ENST00000558518 BOLA2-SMG1P6H3BVE0 249 aa11.66□□□□□ -0.54
LDLR-208ENST00000558518 ADCY6O43306 1168 aa11.66□□□□□ -0.54
LDLR-208ENST00000558518 ZBTB14O43829 449 aa11.66□□□□□ -0.54
LDLR-208ENST00000558518 TMCC1O94876 653 aa11.66□□□□□ -0.54
LDLR-208ENST00000558518 MPSTP25325 297 aa11.66□□□□□ -0.54
LDLR-208ENST00000558518 RPL5P46777 297 aaKnown RBP11.66□□□□□ -0.54
LDLR-208ENST00000558518 MAP3K10Q02779 954 aa11.66□□□□□ -0.54
LDLR-208ENST00000558518 CMPK2Q5EBM0 449 aa11.66□□□□□ -0.54
LDLR-208ENST00000558518 KCNT2Q6UVM3 1135 aa11.66□□□□□ -0.54
LDLR-208ENST00000558518 PQLC1Q8N2U9 271 aa11.66□□□□□ -0.54
LDLR-208ENST00000558518 PPP1R13LQ8WUF5 828 aa11.66□□□□□ -0.54
LDLR-208ENST00000558518 ANKRD36BP1Q96IX9 119 aa11.66□□□□□ -0.54
LDLR-208ENST00000558518 SIKE1Q9BRV8 207 aa11.66□□□□□ -0.54
LDLR-208ENST00000558518 SH3BP1Q9Y3L3 701 aa11.66□□□□□ -0.54
LDLR-208ENST00000558518 CENPFP49454 3210 aa11.66□□□□□ -0.54
LDLR-208ENST00000558518 ZNFX1Q9P2E3 1918 aaKnown RBP11.65□□□□□ -0.54
LDLR-208ENST00000558518 NDC80O14777 642 aa11.65□□□□□ -0.54
LDLR-208ENST00000558518 MICAL2O94851 1124 aa11.65□□□□□ -0.54
LDLR-208ENST00000558518 ASS1P00966 412 aaKnown RBP11.65□□□□□ -0.54
LDLR-208ENST00000558518 ASNSP08243 561 aa11.65□□□□□ -0.54
LDLR-208ENST00000558518 LCP1P13796 627 aa11.65□□□□□ -0.54
LDLR-208ENST00000558518 CPA3P15088 417 aa11.65□□□□□ -0.54
LDLR-208ENST00000558518 ARSAP15289 507 aa11.65□□□□□ -0.54
LDLR-208ENST00000558518 TCF7P36402 384 aaPredicted RBP11.65□□□□□ -0.54
LDLR-208ENST00000558518 CPOXP36551 454 aa11.65□□□□□ -0.54
LDLR-208ENST00000558518 HSD17B4P51659 736 aa11.65□□□□□ -0.54
LDLR-208ENST00000558518 MAP3K21Q5TCX8 1036 aa11.65□□□□□ -0.54
LDLR-208ENST00000558518 LRRC38Q5VT99 294 aa11.65□□□□□ -0.54
LDLR-208ENST00000558518 FBXW8Q8N3Y1 598 aa11.65□□□□□ -0.54
LDLR-208ENST00000558518 PLD5Q8N7P1 536 aa11.65□□□□□ -0.54
LDLR-208ENST00000558518 RNF169Q8NCN4 708 aa11.65□□□□□ -0.54
LDLR-208ENST00000558518 ITFG2Q969R8 447 aa11.65□□□□□ -0.54
LDLR-208ENST00000558518 DHRS4Q9BTZ2 278 aa11.65□□□□□ -0.54
LDLR-208ENST00000558518 ARHGAP28Q9P2N2 729 aa11.65□□□□□ -0.54
LDLR-208ENST00000558518 HES2Q9Y543 173 aa11.65□□□□□ -0.54
LDLR-208ENST00000558518 LDHAP00338 332 aaKnown RBP11.65□□□□□ -0.54
LDLR-208ENST00000558518 P4HA1P13674 534 aa11.65□□□□□ -0.54
LDLR-208ENST00000558518 GPD1P21695 349 aa11.65□□□□□ -0.54
LDLR-208ENST00000558518 FUT4P22083 530 aa11.65□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms