RNA–Protein interactions for RNA: ENST00000558469.5

CUX1-216, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 588 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-216ENST00000558469 SP100P23497 879 aaPredicted RBP9.98□□□□□ -0.81
CUX1-216ENST00000558469 CCR1P32246 355 aa9.98□□□□□ -0.81
CUX1-216ENST00000558469 GJC1P36383 396 aa9.98□□□□□ -0.81
CUX1-216ENST00000558469 HARS2P49590 506 aaKnown RBP9.98□□□□□ -0.81
CUX1-216ENST00000558469 TAS2R40P59535 323 aa9.98□□□□□ -0.81
CUX1-216ENST00000558469 ZXDBP98169 803 aa9.98□□□□□ -0.81
CUX1-216ENST00000558469 RING1Q06587 406 aa9.98□□□□□ -0.81
CUX1-216ENST00000558469 HADHQ16836 314 aaKnown RBP9.98□□□□□ -0.81
CUX1-216ENST00000558469 LEXMQ3ZCV2 418 aa9.98□□□□□ -0.81
CUX1-216ENST00000558469 FAM78AQ5JUQ0 283 aa9.98□□□□□ -0.81
CUX1-216ENST00000558469 PEX26Q7Z412 305 aa9.98□□□□□ -0.81
CUX1-216ENST00000558469 NT5DC3Q86UY8 548 aa9.98□□□□□ -0.81
CUX1-216ENST00000558469 UNC45BQ8IWX7 931 aa9.98□□□□□ -0.81
CUX1-216ENST00000558469 SLC35F6Q8N357 371 aa9.98□□□□□ -0.81
CUX1-216ENST00000558469 CCDC185Q8N715 623 aa9.98□□□□□ -0.81
CUX1-216ENST00000558469 ST13P5Q8NFI4 369 aaPredicted RBP9.98□□□□□ -0.81
CUX1-216ENST00000558469 ADAMTS19Q8TE59 1207 aa9.98□□□□□ -0.81
CUX1-216ENST00000558469 USP13Q92995 863 aaPredicted RBP9.98□□□□□ -0.81
CUX1-216ENST00000558469 WBP2Q969T9 261 aa9.98□□□□□ -0.81
CUX1-216ENST00000558469 PLD4Q96BZ4 506 aa9.98□□□□□ -0.81
CUX1-216ENST00000558469 SLC39A13Q96H72 371 aa9.98□□□□□ -0.81
CUX1-216ENST00000558469 ASB16Q96NS5 453 aa9.98□□□□□ -0.81
CUX1-216ENST00000558469 PEBP4Q96S96 227 aa9.98□□□□□ -0.81
CUX1-216ENST00000558469 TKTL2Q9H0I9 626 aa9.98□□□□□ -0.81
CUX1-216ENST00000558469 PRDM6Q9NQX0 595 aa9.98□□□□□ -0.81
CUX1-216ENST00000558469 TMPRSS4Q9NRS4 437 aa9.98□□□□□ -0.81
CUX1-216ENST00000558469 TMEM51Q9NW97 253 aa9.98□□□□□ -0.81
CUX1-216ENST00000558469 SLTMQ9NWH9 1034 aaKnown RBP eCLIP9.98□□□□□ -0.81
CUX1-216ENST00000558469 CFAP97Q9P2B7 532 aa9.98□□□□□ -0.81
CUX1-216ENST00000558469 SLC12A6Q9UHW9 1150 aa9.98□□□□□ -0.81
CUX1-216ENST00000558469 ARHGAP26Q9UNA1 814 aa9.98□□□□□ -0.81
CUX1-216ENST00000558469 PACSIN2Q9UNF0 486 aaPredicted RBP9.98□□□□□ -0.81
CUX1-216ENST00000558469 KCNU1A8MYU2 1149 aa9.97□□□□□ -0.81
CUX1-216ENST00000558469 IGLV3-27P01718 113 aa9.97□□□□□ -0.81
CUX1-216ENST00000558469 APOEP02649 317 aa9.97□□□□□ -0.81
CUX1-216ENST00000558469 KRT7P08729 469 aa9.97□□□□□ -0.81
CUX1-216ENST00000558469 LAMP2P13473 410 aa9.97□□□□□ -0.81
CUX1-216ENST00000558469 IL1R2P27930 398 aa9.97□□□□□ -0.81
CUX1-216ENST00000558469 WEE1P30291 646 aa9.97□□□□□ -0.81
CUX1-216ENST00000558469 CORO1AP31146 461 aaKnown RBP9.97□□□□□ -0.81
CUX1-216ENST00000558469 ADRA1BP35368 520 aa9.97□□□□□ -0.81
CUX1-216ENST00000558469 VIPR2P41587 438 aa9.97□□□□□ -0.81
CUX1-216ENST00000558469 GNG11P61952 73 aa9.97□□□□□ -0.81
CUX1-216ENST00000558469 SLC25A11Q02978 314 aaKnown RBP9.97□□□□□ -0.81
CUX1-216ENST00000558469 TFF2Q03403 129 aa9.97□□□□□ -0.81
CUX1-216ENST00000558469 PPP2R5DQ14738 602 aa9.97□□□□□ -0.81
CUX1-216ENST00000558469 SMTNL2Q2TAL5 461 aa9.97□□□□□ -0.81
CUX1-216ENST00000558469 ARL13BQ3SXY8 428 aa9.97□□□□□ -0.81
CUX1-216ENST00000558469 ATP13A4Q4VNC1 1196 aa9.97□□□□□ -0.81
CUX1-216ENST00000558469 KCNT1Q5JUK3 1230 aa9.97□□□□□ -0.81
CUX1-216ENST00000558469 BRMS1LQ5PSV4 323 aa9.97□□□□□ -0.81
CUX1-216ENST00000558469 ZFYVE27Q5T4F4 411 aa9.97□□□□□ -0.81
CUX1-216ENST00000558469 ERMARDQ5T6L9 678 aa9.97□□□□□ -0.81
CUX1-216ENST00000558469 MEI1Q5TIA1 1274 aa9.97□□□□□ -0.81
CUX1-216ENST00000558469 NUGGCQ68CJ6 796 aa9.97□□□□□ -0.81
CUX1-216ENST00000558469 TXNRD3NBQ6F5E7 133 aa9.97□□□□□ -0.81
CUX1-216ENST00000558469 PTCRAQ6ISU1 281 aaPredicted RBP9.97□□□□□ -0.81
CUX1-216ENST00000558469 CYP4V2Q6ZWL3 525 aaPredicted RBP9.97□□□□□ -0.81
CUX1-216ENST00000558469 OTOP3Q7RTS5 596 aa9.97□□□□□ -0.81
CUX1-216ENST00000558469 DDX42Q86XP3 938 aaKnown RBP eCLIP9.97□□□□□ -0.81
CUX1-216ENST00000558469 DENND1CQ8IV53 801 aa9.97□□□□□ -0.81
CUX1-216ENST00000558469 RHOT1Q8IXI2 618 aa9.97□□□□□ -0.81
CUX1-216ENST00000558469 CELF5Q8N6W0 485 aaKnown RBP9.97□□□□□ -0.81
CUX1-216ENST00000558469 ATP6V0D2Q8N8Y2 350 aa9.97□□□□□ -0.81
CUX1-216ENST00000558469 SH3RF2Q8TEC5 729 aa9.97□□□□□ -0.81
CUX1-216ENST00000558469 HSPH1Q92598 858 aa9.97□□□□□ -0.81
CUX1-216ENST00000558469 SMARCD2Q92925 531 aa9.97□□□□□ -0.81
CUX1-216ENST00000558469 CD101Q93033 1021 aa9.97□□□□□ -0.81
CUX1-216ENST00000558469 MAGEB5Q9BZ81 275 aa9.97□□□□□ -0.81
CUX1-216ENST00000558469 SIK2Q9H0K1 926 aa9.97□□□□□ -0.81
CUX1-216ENST00000558469 ANLNQ9NQW6 1124 aa9.97□□□□□ -0.81
CUX1-216ENST00000558469 GPATCH2LQ9NWQ4 482 aa9.97□□□□□ -0.81
CUX1-216ENST00000558469 ARHGEF38Q9NXL2 777 aa9.97□□□□□ -0.81
CUX1-216ENST00000558469 LSM7Q9UK45 103 aaKnown RBP9.97□□□□□ -0.81
CUX1-216ENST00000558469 FZD10Q9ULW2 581 aa9.97□□□□□ -0.81
CUX1-216ENST00000558469 SH3BP1Q9Y3L3 701 aa9.97□□□□□ -0.81
CUX1-216ENST00000558469 ZFP37Q9Y6Q3 630 aaPredicted RBP9.97□□□□□ -0.81
CUX1-216ENST00000558469 TCF20Q9UGU0 1960 aaKnown RBP9.97□□□□□ -0.81
CUX1-216ENST00000558469 TICRRQ7Z2Z1 1910 aa9.96□□□□□ -0.81
CUX1-216ENST00000558469 NUP205Q92621 2012 aa9.96□□□□□ -0.81
CUX1-216ENST00000558469 I6L893 689 aaPredicted RBP9.96□□□□□ -0.82
CUX1-216ENST00000558469 SCAMP3O14828 347 aaKnown RBP9.96□□□□□ -0.82
CUX1-216ENST00000558469 PSTPIP1O43586 416 aa9.96□□□□□ -0.82
CUX1-216ENST00000558469 PAGE1O75459 146 aa9.96□□□□□ -0.82
CUX1-216ENST00000558469 KLKB1P03952 638 aa9.96□□□□□ -0.82
CUX1-216ENST00000558469 RARAP10276 462 aa9.96□□□□□ -0.82
CUX1-216ENST00000558469 CTNNA1P35221 906 aaKnown RBP9.96□□□□□ -0.82
CUX1-216ENST00000558469 SLC11A2P49281 568 aa9.96□□□□□ -0.82
CUX1-216ENST00000558469 DNA2P51530 1060 aa9.96□□□□□ -0.82
CUX1-216ENST00000558469 AIF1P55008 147 aa9.96□□□□□ -0.82
CUX1-216ENST00000558469 SMAD2Q15796 467 aaKnown RBP9.96□□□□□ -0.82
CUX1-216ENST00000558469 BOLA3Q53S33 107 aa9.96□□□□□ -0.82
CUX1-216ENST00000558469 HTR3DQ70Z44 454 aa9.96□□□□□ -0.82
CUX1-216ENST00000558469 POLNQ7Z5Q5 900 aa9.96□□□□□ -0.82
CUX1-216ENST00000558469 PYROXD2Q8N2H3 581 aa9.96□□□□□ -0.82
CUX1-216ENST00000558469 NTAN1Q96AB6 310 aa9.96□□□□□ -0.82
CUX1-216ENST00000558469 ACSF2Q96CM8 615 aaPredicted RBP9.96□□□□□ -0.82
CUX1-216ENST00000558469 BTN2A3PQ96KV6 586 aa9.96□□□□□ -0.82
CUX1-216ENST00000558469 C16orf45Q96MC5 204 aaPredicted RBP9.96□□□□□ -0.82
CUX1-216ENST00000558469 WDR24Q96S15 920 aa9.96□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms