RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, human

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-223	ENST00000556689	LHX5	Q9H2C1	402 aa		13.26	□□□□□ -0.29
SHMT2-223	ENST00000556689	TM9SF3	Q9HD45	589 aa		13.26	□□□□□ -0.29
SHMT2-223	ENST00000556689	OSGEP	Q9NPF4	335 aa		13.26	□□□□□ -0.29
SHMT2-223	ENST00000556689	FAM13B	Q9NYF5	915 aa		13.26	□□□□□ -0.29
SHMT2-223	ENST00000556689	MARCH2	Q9P0N8	246 aa		13.26	□□□□□ -0.29
SHMT2-223	ENST00000556689	FRMD4B	Q9Y2L6	1034 aa		13.26	□□□□□ -0.29
SHMT2-223	ENST00000556689	ZBTB32	Q9Y2Y4	487 aa	Predicted RBP	13.26	□□□□□ -0.29
SHMT2-223	ENST00000556689	SLC12A8	A0AV02	714 aa		13.25	□□□□□ -0.29
SHMT2-223	ENST00000556689	FAM149A	A5PLN7	773 aa		13.25	□□□□□ -0.29
SHMT2-223	ENST00000556689	PDXK	O00764	312 aa		13.25	□□□□□ -0.29
SHMT2-223	ENST00000556689	PCDHGA12	O60330	932 aa		13.25	□□□□□ -0.29
SHMT2-223	ENST00000556689	NR3C1	P04150	777 aa		13.25	□□□□□ -0.29
SHMT2-223	ENST00000556689	GRIA4	P48058	902 aa		13.25	□□□□□ -0.29
SHMT2-223	ENST00000556689	STK4	Q13043	487 aa		13.25	□□□□□ -0.29
SHMT2-223	ENST00000556689	PTPRN	Q16849	979 aa		13.25	□□□□□ -0.29
SHMT2-223	ENST00000556689	MPPE1	Q53F39	396 aa		13.25	□□□□□ -0.29
SHMT2-223	ENST00000556689	CCDC157	Q569K6	752 aa		13.25	□□□□□ -0.29
SHMT2-223	ENST00000556689	CEP135	Q66GS9	1140 aa		13.25	□□□□□ -0.29
SHMT2-223	ENST00000556689	RSRC2	Q7L4I2	434 aa	Known RBP	13.25	□□□□□ -0.29
SHMT2-223	ENST00000556689	HEXIM2	Q96MH2	286 aa	Known RBP	13.25	□□□□□ -0.29
SHMT2-223	ENST00000556689	UBXN6	Q9BZV1	441 aa		13.25	□□□□□ -0.29
SHMT2-223	ENST00000556689	BTBD1	Q9H0C5	482 aa		13.25	□□□□□ -0.29
SHMT2-223	ENST00000556689	KCTD10	Q9H3F6	313 aa		13.25	□□□□□ -0.29
SHMT2-223	ENST00000556689	APOBEC3G	Q9HC16	384 aa	Known RBP	13.25	□□□□□ -0.29
SHMT2-223	ENST00000556689	FOXD4L1	Q9NU39	408 aa		13.25	□□□□□ -0.29
SHMT2-223	ENST00000556689	SLCO1B1	Q9Y6L6	691 aa		13.25	□□□□□ -0.29
SHMT2-223	ENST00000556689		E9PAM4	449 aa		13.24	□□□□□ -0.29
SHMT2-223	ENST00000556689	DFNA5	O60443	496 aa		13.24	□□□□□ -0.29
SHMT2-223	ENST00000556689	TSPAN3	O60637	253 aa		13.24	□□□□□ -0.29
SHMT2-223	ENST00000556689	FSBP	O95073	299 aa		13.24	□□□□□ -0.29
SHMT2-223	ENST00000556689	SEMA4F	O95754	770 aa		13.24	□□□□□ -0.29
SHMT2-223	ENST00000556689	C7	P10643	843 aa		13.24	□□□□□ -0.29
SHMT2-223	ENST00000556689	HLA-E	P13747	358 aa		13.24	□□□□□ -0.29
SHMT2-223	ENST00000556689	CD58	P19256	250 aa		13.24	□□□□□ -0.29
SHMT2-223	ENST00000556689	CD27	P26842	260 aa		13.24	□□□□□ -0.29
SHMT2-223	ENST00000556689	HARS2	P49590	506 aa	Known RBP	13.24	□□□□□ -0.29
SHMT2-223	ENST00000556689	CCT8	P50990	548 aa		13.24	□□□□□ -0.29
SHMT2-223	ENST00000556689	VAMP7	P51809	220 aa		13.24	□□□□□ -0.29
SHMT2-223	ENST00000556689	YWHAG	P61981	247 aa	Known RBP eCLIP	13.24	□□□□□ -0.29
SHMT2-223	ENST00000556689	ZBTB16	Q05516	673 aa		13.24	□□□□□ -0.29
SHMT2-223	ENST00000556689	FNDC3B	Q53EP0	1204 aa	Known RBP	13.24	□□□□□ -0.29
SHMT2-223	ENST00000556689	ZNF394	Q53GI3	561 aa		13.24	□□□□□ -0.29
SHMT2-223	ENST00000556689	C1orf220	Q5T0J3	134 aa		13.24	□□□□□ -0.29
SHMT2-223	ENST00000556689	ADAT2	Q7Z6V5	191 aa	Known RBP	13.24	□□□□□ -0.29
SHMT2-223	ENST00000556689	FAM217A	Q8IXS0	508 aa		13.24	□□□□□ -0.29
SHMT2-223	ENST00000556689	CEP57L1	Q8IYX8	460 aa		13.24	□□□□□ -0.29
SHMT2-223	ENST00000556689	PLD4	Q96BZ4	506 aa		13.24	□□□□□ -0.29
SHMT2-223	ENST00000556689	BIRC7	Q96CA5	298 aa		13.24	□□□□□ -0.29
SHMT2-223	ENST00000556689	TMEM245	Q9H330	911 aa		13.24	□□□□□ -0.29
SHMT2-223	ENST00000556689	EXOC1	Q9NV70	894 aa		13.24	□□□□□ -0.29
SHMT2-223	ENST00000556689	URB1	O60287	2271 aa	Known RBP	13.23	□□□□□ -0.29
SHMT2-223	ENST00000556689		H0Y8X5	98 aa		13.23	□□□□□ -0.29
SHMT2-223	ENST00000556689	KLRC4	O43908	158 aa		13.23	□□□□□ -0.29
SHMT2-223	ENST00000556689	DNTT	P04053	509 aa		13.23	□□□□□ -0.29
SHMT2-223	ENST00000556689	PDIA4	P13667	645 aa	Known RBP	13.23	□□□□□ -0.29
SHMT2-223	ENST00000556689	HLA-F	P30511	346 aa		13.23	□□□□□ -0.29
SHMT2-223	ENST00000556689	PDE4C	Q08493	712 aa		13.23	□□□□□ -0.29
SHMT2-223	ENST00000556689	BECN1	Q14457	450 aa		13.23	□□□□□ -0.29
SHMT2-223	ENST00000556689	TRIP4	Q15650	581 aa	Predicted RBP	13.23	□□□□□ -0.29
SHMT2-223	ENST00000556689	INAVA	Q3KP66	663 aa		13.23	□□□□□ -0.29
SHMT2-223	ENST00000556689	DHRS13	Q6UX07	377 aa		13.23	□□□□□ -0.29
SHMT2-223	ENST00000556689	TMPRSS12	Q86WS5	348 aa		13.23	□□□□□ -0.29
SHMT2-223	ENST00000556689	GRAMD1C	Q8IYS0	662 aa		13.23	□□□□□ -0.29
SHMT2-223	ENST00000556689	KIAA0895	Q8NCT3	520 aa		13.23	□□□□□ -0.29
SHMT2-223	ENST00000556689	CCDC150	Q8NCX0	1101 aa		13.23	□□□□□ -0.29
SHMT2-223	ENST00000556689	WFIKKN2	Q8TEU8	576 aa		13.23	□□□□□ -0.29
SHMT2-223	ENST00000556689	CYB5D2	Q8WUJ1	264 aa		13.23	□□□□□ -0.29
SHMT2-223	ENST00000556689	TMA16	Q96EY4	203 aa	Known RBP	13.23	□□□□□ -0.29
SHMT2-223	ENST00000556689	DCBLD2	Q96PD2	775 aa		13.23	□□□□□ -0.29
SHMT2-223	ENST00000556689	ARID3A	Q99856	593 aa		13.23	□□□□□ -0.29
SHMT2-223	ENST00000556689	NIF3L1	Q9GZT8	377 aa		13.23	□□□□□ -0.29
SHMT2-223	ENST00000556689	FBRS	Q9HAH7	460 aa		13.23	□□□□□ -0.29
SHMT2-223	ENST00000556689	SGK2	Q9HBY8	427 aa		13.23	□□□□□ -0.29
SHMT2-223	ENST00000556689	SUN2	Q9UH99	717 aa		13.23	□□□□□ -0.29
SHMT2-223	ENST00000556689	MAPK13	O15264	365 aa		13.22	□□□□□ -0.29
SHMT2-223	ENST00000556689	CALU	O43852	315 aa	Predicted RBP	13.22	□□□□□ -0.29
SHMT2-223	ENST00000556689	SLFN14	P0C7P3	912 aa		13.22	□□□□□ -0.29
SHMT2-223	ENST00000556689	JUP	P14923	745 aa		13.22	□□□□□ -0.29
SHMT2-223	ENST00000556689	HOXD9	P28356	352 aa	Predicted RBP	13.22	□□□□□ -0.29
SHMT2-223	ENST00000556689	CTSK	P43235	329 aa		13.22	□□□□□ -0.29
SHMT2-223	ENST00000556689	ABCG1	P45844	678 aa		13.22	□□□□□ -0.29
SHMT2-223	ENST00000556689	GCLM	P48507	274 aa		13.22	□□□□□ -0.29
SHMT2-223	ENST00000556689	BCAT1	P54687	386 aa		13.22	□□□□□ -0.29
SHMT2-223	ENST00000556689	SLC8A3	P57103	927 aa		13.22	□□□□□ -0.29
SHMT2-223	ENST00000556689	ZNF445	P59923	1031 aa		13.22	□□□□□ -0.29
SHMT2-223	ENST00000556689	RPS14	P62263	151 aa	Known RBP	13.22	□□□□□ -0.29
SHMT2-223	ENST00000556689	C19orf57	Q0VDD7	668 aa		13.22	□□□□□ -0.29
SHMT2-223	ENST00000556689	KMT5B	Q4FZB7	885 aa		13.22	□□□□□ -0.29
SHMT2-223	ENST00000556689	RAB41	Q5JT25	222 aa		13.22	□□□□□ -0.29
SHMT2-223	ENST00000556689	KCNT1	Q5JUK3	1230 aa		13.22	□□□□□ -0.29
SHMT2-223	ENST00000556689	LAYN	Q6UX15	382 aa		13.22	□□□□□ -0.29
SHMT2-223	ENST00000556689	CHST9	Q7L1S5	443 aa		13.22	□□□□□ -0.29
SHMT2-223	ENST00000556689	ADIPOR2	Q86V24	386 aa		13.22	□□□□□ -0.29
SHMT2-223	ENST00000556689	PIGZ	Q86VD9	579 aa		13.22	□□□□□ -0.29
SHMT2-223	ENST00000556689	HSCB	Q8IWL3	235 aa		13.22	□□□□□ -0.29
SHMT2-223	ENST00000556689	ZNF366	Q8N895	744 aa		13.22	□□□□□ -0.29
SHMT2-223	ENST00000556689	TAS1R2	Q8TE23	839 aa		13.22	□□□□□ -0.29
SHMT2-223	ENST00000556689	GOLGA1	Q92805	767 aa		13.22	□□□□□ -0.29
SHMT2-223	ENST00000556689	CRELD1	Q96HD1	420 aa		13.22	□□□□□ -0.29
SHMT2-223	ENST00000556689	UBL7	Q96S82	380 aa	Predicted RBP	13.22	□□□□□ -0.29

Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms