RNA–Protein interactions for RNA: ENST00000555543.1

VTI1B-205, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 2

Gene VTI1B, Length 718 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-205ENST00000555543 TLR6Q9Y2C9 796 aa21.34■■□□□ 1.01
VTI1B-205ENST00000555543 SLC27A6Q9Y2P4 619 aa21.34■■□□□ 1.01
VTI1B-205ENST00000555543 CAPN9O14815 690 aa21.33■■□□□ 1.01
VTI1B-205ENST00000555543 IRAK2O43187 625 aa21.33■■□□□ 1.01
VTI1B-205ENST00000555543 GRAP2O75791 330 aa21.33■■□□□ 1.01
VTI1B-205ENST00000555543 RPP40O75818 363 aaKnown RBP21.33■■□□□ 1.01
VTI1B-205ENST00000555543 GFPT2O94808 682 aa21.33■■□□□ 1.01
VTI1B-205ENST00000555543 IGLV3-25P01717 112 aa21.33■■□□□ 1.01
VTI1B-205ENST00000555543 CDK11BP21127 795 aaKnown RBP21.33■■□□□ 1.01
VTI1B-205ENST00000555543 SLC6A4P31645 630 aa21.33■■□□□ 1.01
VTI1B-205ENST00000555543 CDH5P33151 784 aaPredicted RBP21.33■■□□□ 1.01
VTI1B-205ENST00000555543 WASP42768 502 aa21.33■■□□□ 1.01
VTI1B-205ENST00000555543 DGKEP52429 567 aa21.33■■□□□ 1.01
VTI1B-205ENST00000555543 MPPE1Q53F39 396 aa21.33■■□□□ 1.01
VTI1B-205ENST00000555543 EOGTQ5NDL2 527 aa21.33■■□□□ 1.01
VTI1B-205ENST00000555543 NADSYN1Q6IA69 706 aa21.33■■□□□ 1.01
VTI1B-205ENST00000555543 OR6B2Q6IFH4 312 aa21.33■■□□□ 1.01
VTI1B-205ENST00000555543 RFWD3Q6PCD5 774 aa21.33■■□□□ 1.01
VTI1B-205ENST00000555543 NUDT18Q6ZVK8 323 aa21.33■■□□□ 1.01
VTI1B-205ENST00000555543 CEP68Q76N32 757 aa21.33■■□□□ 1.01
VTI1B-205ENST00000555543 RASSF3Q86WH2 238 aa21.33■■□□□ 1.01
VTI1B-205ENST00000555543 UNC45BQ8IWX7 931 aa21.33■■□□□ 1.01
VTI1B-205ENST00000555543 MDGA1Q8NFP4 955 aa21.33■■□□□ 1.01
VTI1B-205ENST00000555543 KCNV2Q8TDN2 545 aa21.33■■□□□ 1.01
VTI1B-205ENST00000555543 SLC20A1Q8WUM9 679 aa21.33■■□□□ 1.01
VTI1B-205ENST00000555543 SLC2A13Q96QE2 648 aa21.33■■□□□ 1.01
VTI1B-205ENST00000555543 TRIM62Q9BVG3 475 aa21.33■■□□□ 1.01
VTI1B-205ENST00000555543 NAT10Q9H0A0 1025 aaKnown RBP21.33■■□□□ 1.01
VTI1B-205ENST00000555543 CEP83Q9Y592 693 aa21.33■■□□□ 1.01
VTI1B-205ENST00000555543 ACSL4O60488 711 aa21.32■■□□□ 1
VTI1B-205ENST00000555543 TRUB2O95900 331 aaKnown RBP21.32■■□□□ 1
VTI1B-205ENST00000555543 MMEP08473 750 aa21.32■■□□□ 1
VTI1B-205ENST00000555543 UBXN1Q04323 297 aa21.32■■□□□ 1
VTI1B-205ENST00000555543 KLHL40Q2TBA0 621 aa21.32■■□□□ 1
VTI1B-205ENST00000555543 DCAF6Q58WW2 860 aa21.32■■□□□ 1
VTI1B-205ENST00000555543 LAIR1Q6GTX8 287 aa21.32■■□□□ 1
VTI1B-205ENST00000555543 DEFB106AQ8N104 65 aa21.32■■□□□ 1
VTI1B-205ENST00000555543 MYEOVQ96EZ4 313 aa21.32■■□□□ 1
VTI1B-205ENST00000555543 PRICKLE1Q96MT3 831 aaPredicted RBP21.32■■□□□ 1
VTI1B-205ENST00000555543 ASNSD1Q9NWL6 643 aa21.32■■□□□ 1
VTI1B-205ENST00000555543 XPO7Q9UIA9 1087 aaKnown RBP21.32■■□□□ 1
VTI1B-205ENST00000555543 NOCTQ9UK39 431 aaKnown RBP21.32■■□□□ 1
VTI1B-205ENST00000555543 RAB23Q9ULC3 237 aa21.32■■□□□ 1
VTI1B-205ENST00000555543 SPTBN4Q9H254 2564 aa21.31■■□□□ 1
VTI1B-205ENST00000555543 DCLK1O15075 740 aa21.31■■□□□ 1
VTI1B-205ENST00000555543 HSF2BPO75031 334 aa21.31■■□□□ 1
VTI1B-205ENST00000555543 GLI1P08151 1106 aa21.31■■□□□ 1
VTI1B-205ENST00000555543 NTSR1P30989 418 aa21.31■■□□□ 1
VTI1B-205ENST00000555543 SOX5P35711 763 aa21.31■■□□□ 1
VTI1B-205ENST00000555543 SLC11A2P49281 568 aa21.31■■□□□ 1
VTI1B-205ENST00000555543 EIF4EBP2Q13542 120 aaPredicted RBP21.31■■□□□ 1
VTI1B-205ENST00000555543 PIK3R6Q5UE93 754 aa21.31■■□□□ 1
VTI1B-205ENST00000555543 RNF43Q68DV7 783 aa21.31■■□□□ 1
VTI1B-205ENST00000555543 TRMT11Q7Z4G4 463 aaKnown RBP21.31■■□□□ 1
VTI1B-205ENST00000555543 KBTBD6Q86V97 674 aa21.31■■□□□ 1
VTI1B-205ENST00000555543 FAM160A2Q8N612 972 aaPredicted RBP21.31■■□□□ 1
VTI1B-205ENST00000555543 TMEM35BQ8NCS4 154 aa21.31■■□□□ 1
VTI1B-205ENST00000555543 IPO4Q8TEX9 1081 aaKnown RBP21.31■■□□□ 1
VTI1B-205ENST00000555543 AZIN2Q96A70 460 aa21.31■■□□□ 1
VTI1B-205ENST00000555543 TMA16Q96EY4 203 aaKnown RBP21.31■■□□□ 1
VTI1B-205ENST00000555543 ERGIC2Q96RQ1 377 aa21.31■■□□□ 1
VTI1B-205ENST00000555543 NUCKS1Q9H1E3 243 aaKnown RBP21.31■■□□□ 1
VTI1B-205ENST00000555543 PDCL3Q9H2J4 239 aa21.31■■□□□ 1
VTI1B-205ENST00000555543 SYNCQ9H7C4 482 aa21.31■■□□□ 1
VTI1B-205ENST00000555543 A0A1W2PQF6 199 aa21.3■■□□□ 1
VTI1B-205ENST00000555543 TCRBV21S2A2A0A5A6 115 aa21.3■■□□□ 1
VTI1B-205ENST00000555543 SYCE3A1L190 88 aa21.3■■□□□ 1
VTI1B-205ENST00000555543 MOCS2O96007 188 aaPredicted RBP21.3■■□□□ 1
VTI1B-205ENST00000555543 ZNF445P59923 1031 aa21.3■■□□□ 1
VTI1B-205ENST00000555543 SLC6A3Q01959 620 aa21.3■■□□□ 1
VTI1B-205ENST00000555543 C2CD6Q53TS8 623 aa21.3■■□□□ 1
VTI1B-205ENST00000555543 ZC3H12AQ5D1E8 599 aaKnown RBP21.3■■□□□ 1
VTI1B-205ENST00000555543 EFHC1Q5JVL4 640 aa21.3■■□□□ 1
VTI1B-205ENST00000555543 TMEM215Q68D42 235 aa21.3■■□□□ 1
VTI1B-205ENST00000555543 SLC26A9Q7LBE3 791 aa21.3■■□□□ 1
VTI1B-205ENST00000555543 ANKS1BQ7Z6G8 1248 aa21.3■■□□□ 1
VTI1B-205ENST00000555543 ARHGAP30Q7Z6I6 1101 aaPredicted RBP21.3■■□□□ 1
VTI1B-205ENST00000555543 KIAA2013Q8IYS2 634 aa21.3■■□□□ 1
VTI1B-205ENST00000555543 CHPFQ8IZ52 775 aa21.3■■□□□ 1
VTI1B-205ENST00000555543 NEK11Q8NG66 645 aa21.3■■□□□ 1
VTI1B-205ENST00000555543 WFDC5Q8TCV5 224 aa21.3■■□□□ 1
VTI1B-205ENST00000555543 ERLEC1Q96DZ1 483 aa21.3■■□□□ 1
VTI1B-205ENST00000555543 PCMTD1Q96MG8 357 aaPredicted RBP21.3■■□□□ 1
VTI1B-205ENST00000555543 SLC2A11Q9BYW1 496 aa21.3■■□□□ 1
VTI1B-205ENST00000555543 CD248Q9HCU0 757 aa21.3■■□□□ 1
VTI1B-205ENST00000555543 CACNA2D2Q9NY47 1150 aa21.3■■□□□ 1
VTI1B-205ENST00000555543 GMEB2Q9UKD1 530 aa21.3■■□□□ 1
VTI1B-205ENST00000555543 INVSQ9Y283 1065 aa21.3■■□□□ 1
VTI1B-205ENST00000555543 DAAM1Q9Y4D1 1078 aa21.3■■□□□ 1
VTI1B-205ENST00000555543 WASH3PC4AMC7 463 aa21.29■■□□□ 1
VTI1B-205ENST00000555543 DAB1O75553 588 aa21.29■■□□□ 1
VTI1B-205ENST00000555543 LSM8O95777 96 aaKnown RBP21.29■■□□□ 1
VTI1B-205ENST00000555543 HOXB2P14652 356 aa21.29■■□□□ 1
VTI1B-205ENST00000555543 CHRNB2P17787 502 aa21.29■■□□□ 1
VTI1B-205ENST00000555543 HLA-FP30511 346 aa21.29■■□□□ 1
VTI1B-205ENST00000555543 GABRB2P47870 512 aa21.29■■□□□ 1
VTI1B-205ENST00000555543 ZNF165P49910 485 aa21.29■■□□□ 1
VTI1B-205ENST00000555543 NOMO3P69849 1222 aa21.29■■□□□ 1
VTI1B-205ENST00000555543 OTUD1Q5VV17 481 aaPredicted RBP21.29■■□□□ 1
VTI1B-205ENST00000555543 KIAA1211LQ6NV74 962 aa21.29■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms