RNA–Protein interactions for RNA: ENST00000554467.5

SHMT2-212, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 3,416 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-212ENST00000554467 MAP3K21Q5TCX8 1036 aa12.09□□□□□ -0.47
SHMT2-212ENST00000554467 FAM72AQ5TYM5 149 aa12.09□□□□□ -0.47
SHMT2-212ENST00000554467 FAM72DQ6L9T8 149 aa12.09□□□□□ -0.47
SHMT2-212ENST00000554467 FAM72BQ86X60 149 aa12.09□□□□□ -0.47
SHMT2-212ENST00000554467 IGDCC3Q8IVU1 814 aa12.09□□□□□ -0.47
SHMT2-212ENST00000554467 PPIL6Q8IXY8 311 aa12.09□□□□□ -0.47
SHMT2-212ENST00000554467 SRRM1Q8IYB3 904 aaKnown RBP12.09□□□□□ -0.47
SHMT2-212ENST00000554467 LRRC34Q8IZ02 419 aa12.09□□□□□ -0.47
SHMT2-212ENST00000554467 CCHCR1Q8TD31 782 aa12.09□□□□□ -0.47
SHMT2-212ENST00000554467 LINC01599Q8WXQ3 324 aa12.09□□□□□ -0.47
SHMT2-212ENST00000554467 CENPIQ92674 756 aaPredicted RBP12.09□□□□□ -0.47
SHMT2-212ENST00000554467 LGMNQ99538 433 aa12.09□□□□□ -0.47
SHMT2-212ENST00000554467 TRIM56Q9BRZ2 755 aaKnown RBP12.09□□□□□ -0.47
SHMT2-212ENST00000554467 FAM129AQ9BZQ8 928 aa12.09□□□□□ -0.47
SHMT2-212ENST00000554467 STARD7Q9NQZ5 370 aa12.09□□□□□ -0.47
SHMT2-212ENST00000554467 LMCD1Q9NZU5 365 aa12.09□□□□□ -0.47
SHMT2-212ENST00000554467 SAMD15Q9P1V8 674 aa12.09□□□□□ -0.47
SHMT2-212ENST00000554467 NUDT5Q9UKK9 219 aa12.09□□□□□ -0.47
SHMT2-212ENST00000554467 CHMP2BQ9UQN3 213 aa12.09□□□□□ -0.47
SHMT2-212ENST00000554467 TET1Q8NFU7 2136 aa12.09□□□□□ -0.47
SHMT2-212ENST00000554467 I6L893 689 aaPredicted RBP12.09□□□□□ -0.47
SHMT2-212ENST00000554467 SDHAF4Q5VUM1 108 aa12.09□□□□□ -0.47
SHMT2-212ENST00000554467 KIF2BQ8N4N8 673 aa12.09□□□□□ -0.47
SHMT2-212ENST00000554467 NAT8LQ8N9F0 302 aa12.09□□□□□ -0.47
SHMT2-212ENST00000554467 ATXN2LQ8WWM7 1075 aaKnown RBP12.09□□□□□ -0.47
SHMT2-212ENST00000554467 FAF2Q96CS3 445 aa12.09□□□□□ -0.47
SHMT2-212ENST00000554467 EPAS1Q99814 870 aa12.09□□□□□ -0.47
SHMT2-212ENST00000554467 DNAJB4Q9UDY4 337 aa12.09□□□□□ -0.47
SHMT2-212ENST00000554467 TDRD15B5MCY1 1934 aaKnown RBP12.08□□□□□ -0.47
SHMT2-212ENST00000554467 MDM4O15151 490 aa12.08□□□□□ -0.48
SHMT2-212ENST00000554467 UBOX5O94941 541 aa12.08□□□□□ -0.48
SHMT2-212ENST00000554467 ODC1P11926 461 aa12.08□□□□□ -0.48
SHMT2-212ENST00000554467 CST5P28325 142 aaPredicted RBP12.08□□□□□ -0.48
SHMT2-212ENST00000554467 RPL34P49207 117 aaKnown RBP12.08□□□□□ -0.48
SHMT2-212ENST00000554467 DEUP1Q05D60 604 aa12.08□□□□□ -0.48
SHMT2-212ENST00000554467 SMAD1Q15797 465 aaKnown RBP12.08□□□□□ -0.48
SHMT2-212ENST00000554467 LHX8Q68G74 356 aa12.08□□□□□ -0.48
SHMT2-212ENST00000554467 KCNT2Q6UVM3 1135 aa12.08□□□□□ -0.48
SHMT2-212ENST00000554467 CENPUQ71F23 418 aa12.08□□□□□ -0.48
SHMT2-212ENST00000554467 FBXO36Q8NEA4 188 aa12.08□□□□□ -0.48
SHMT2-212ENST00000554467 KCNV2Q8TDN2 545 aa12.08□□□□□ -0.48
SHMT2-212ENST00000554467 TEKT4Q8WW24 435 aa12.08□□□□□ -0.48
SHMT2-212ENST00000554467 OSBPL1AQ9BXW6 950 aa12.08□□□□□ -0.48
SHMT2-212ENST00000554467 ZNF623O75123 536 aa12.08□□□□□ -0.48
SHMT2-212ENST00000554467 TOMM70O94826 608 aa12.08□□□□□ -0.48
SHMT2-212ENST00000554467 APRTP07741 180 aa12.08□□□□□ -0.48
SHMT2-212ENST00000554467 PBX3P40426 434 aa12.08□□□□□ -0.48
SHMT2-212ENST00000554467 PGFP49763 221 aa12.08□□□□□ -0.48
SHMT2-212ENST00000554467 GPX6P59796 221 aa12.08□□□□□ -0.48
SHMT2-212ENST00000554467 TUSC3Q13454 348 aa12.08□□□□□ -0.48
SHMT2-212ENST00000554467 DPYSL2Q16555 572 aa12.08□□□□□ -0.48
SHMT2-212ENST00000554467 CLLU1OSQ5K130 101 aa12.08□□□□□ -0.48
SHMT2-212ENST00000554467 SLC9A4Q6AI14 798 aa12.08□□□□□ -0.48
SHMT2-212ENST00000554467 ANO7Q6IWH7 933 aa12.08□□□□□ -0.48
SHMT2-212ENST00000554467 TRPM8Q7Z2W7 1104 aa12.08□□□□□ -0.48
SHMT2-212ENST00000554467 ANKS4BQ8N8V4 417 aa12.08□□□□□ -0.48
SHMT2-212ENST00000554467 SEPT10Q9P0V9 454 aa12.08□□□□□ -0.48
SHMT2-212ENST00000554467 ZMYND8Q9ULU4 1186 aaPredicted RBP12.08□□□□□ -0.48
SHMT2-212ENST00000554467 TRIM33Q9UPN9 1127 aa12.08□□□□□ -0.48
SHMT2-212ENST00000554467 SHOC2Q9UQ13 582 aa12.08□□□□□ -0.48
SHMT2-212ENST00000554467 AGTP01019 485 aa12.08□□□□□ -0.48
SHMT2-212ENST00000554467 OR1G1P47890 313 aa12.08□□□□□ -0.48
SHMT2-212ENST00000554467 CCNG1P51959 295 aa12.08□□□□□ -0.48
SHMT2-212ENST00000554467 MPP2Q14168 576 aa12.08□□□□□ -0.48
SHMT2-212ENST00000554467 OVOS1Q6IE37 1185 aa12.08□□□□□ -0.48
SHMT2-212ENST00000554467 PYROXD1Q8WU10 500 aa12.08□□□□□ -0.48
SHMT2-212ENST00000554467 RSPH1Q8WYR4 309 aa12.08□□□□□ -0.48
SHMT2-212ENST00000554467 TSPAN18Q96SJ8 248 aa12.08□□□□□ -0.48
SHMT2-212ENST00000554467 ZNF670Q9BS34 389 aa12.08□□□□□ -0.48
SHMT2-212ENST00000554467 UBN1Q9NPG3 1134 aa12.08□□□□□ -0.48
SHMT2-212ENST00000554467 DDIT4Q9NX09 232 aa12.08□□□□□ -0.48
SHMT2-212ENST00000554467 NKX1-2Q9UD57 310 aaPredicted RBP12.08□□□□□ -0.48
SHMT2-212ENST00000554467 FZD10Q9ULW2 581 aa12.08□□□□□ -0.48
SHMT2-212ENST00000554467 CLUHO75153 1309 aa12.08□□□□□ -0.48
SHMT2-212ENST00000554467 BPTFQ12830 3046 aa12.08□□□□□ -0.48
SHMT2-212ENST00000554467 MFSD11O43934 449 aa12.07□□□□□ -0.48
SHMT2-212ENST00000554467 SPAG7O75391 227 aa12.07□□□□□ -0.48
SHMT2-212ENST00000554467 DAB1O75553 588 aa12.07□□□□□ -0.48
SHMT2-212ENST00000554467 CCND1P24385 295 aa12.07□□□□□ -0.48
SHMT2-212ENST00000554467 GCAP28676 217 aa12.07□□□□□ -0.48
SHMT2-212ENST00000554467 RPL9P32969 192 aaKnown RBP12.07□□□□□ -0.48
SHMT2-212ENST00000554467 MMP13P45452 471 aa12.07□□□□□ -0.48
SHMT2-212ENST00000554467 DAOAP59103 153 aa12.07□□□□□ -0.48
SHMT2-212ENST00000554467 NKX3-2P78367 333 aa12.07□□□□□ -0.48
SHMT2-212ENST00000554467 RNASELQ05823 741 aaKnown RBP12.07□□□□□ -0.48
SHMT2-212ENST00000554467 NCBP2-AS2Q69YL0 99 aa12.07□□□□□ -0.48
SHMT2-212ENST00000554467 TRAF7Q6Q0C0 670 aa12.07□□□□□ -0.48
SHMT2-212ENST00000554467 TMEM86AQ8N2M4 240 aa12.07□□□□□ -0.48
SHMT2-212ENST00000554467 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP12.07□□□□□ -0.48
SHMT2-212ENST00000554467 EZH1Q92800 747 aaPredicted RBP12.07□□□□□ -0.48
SHMT2-212ENST00000554467 FAM210AQ96ND0 272 aa12.07□□□□□ -0.48
SHMT2-212ENST00000554467 DNAI2Q9GZS0 605 aa12.07□□□□□ -0.48
SHMT2-212ENST00000554467 POPDC2Q9HBU9 364 aa12.07□□□□□ -0.48
SHMT2-212ENST00000554467 DTLQ9NZJ0 730 aa12.07□□□□□ -0.48
SHMT2-212ENST00000554467 CDH9Q9ULB4 789 aa12.07□□□□□ -0.48
SHMT2-212ENST00000554467 NUP205Q92621 2012 aa12.07□□□□□ -0.48
SHMT2-212ENST00000554467 FAM163BP0C2L3 166 aa12.07□□□□□ -0.48
SHMT2-212ENST00000554467 NEFHP12036 1026 aa12.07□□□□□ -0.48
SHMT2-212ENST00000554467 HOXD10P28358 340 aa12.07□□□□□ -0.48
SHMT2-212ENST00000554467 NOS2P35228 1153 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 64.2 ms