RNA–Protein interactions for RNA: ENST00000553619.1

VTI1B-202, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 2

Gene VTI1B, Length 574 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-202ENST00000553619 ALS2CR12Q96Q35 445 aa5.28□□□□□ -1.56
VTI1B-202ENST00000553619 HNRNPABQ99729 332 aaKnown RBP5.28□□□□□ -1.56
VTI1B-202ENST00000553619 NCAPGQ9BPX3 1015 aa5.28□□□□□ -1.56
VTI1B-202ENST00000553619 SYT15Q9BQS2 421 aa5.28□□□□□ -1.56
VTI1B-202ENST00000553619 MRPL45Q9BRJ2 306 aaKnown RBP5.28□□□□□ -1.56
VTI1B-202ENST00000553619 MED10Q9BTT4 135 aa5.28□□□□□ -1.56
VTI1B-202ENST00000553619 TTPALQ9BTX7 342 aa5.28□□□□□ -1.56
VTI1B-202ENST00000553619 TUBB2BQ9BVA1 445 aa5.28□□□□□ -1.56
VTI1B-202ENST00000553619 UBXN6Q9BZV1 441 aa5.28□□□□□ -1.56
VTI1B-202ENST00000553619 ELOVL4Q9GZR5 314 aa5.28□□□□□ -1.56
VTI1B-202ENST00000553619 SDCBP2Q9H190 292 aa5.28□□□□□ -1.56
VTI1B-202ENST00000553619 CXCL16Q9H2A7 254 aa5.28□□□□□ -1.56
VTI1B-202ENST00000553619 SYNCQ9H7C4 482 aa5.28□□□□□ -1.56
VTI1B-202ENST00000553619 SEMA3GQ9NS98 782 aa5.28□□□□□ -1.56
VTI1B-202ENST00000553619 SPTLC3Q9NUV7 552 aa5.28□□□□□ -1.56
VTI1B-202ENST00000553619 C19orf73Q9NVV2 129 aa5.28□□□□□ -1.56
VTI1B-202ENST00000553619 TMEM51Q9NW97 253 aa5.28□□□□□ -1.56
VTI1B-202ENST00000553619 SPG21Q9NZD8 308 aa5.28□□□□□ -1.56
VTI1B-202ENST00000553619 ADAM22Q9P0K1 906 aa5.28□□□□□ -1.56
VTI1B-202ENST00000553619 NOCTQ9UK39 431 aaKnown RBP5.28□□□□□ -1.56
VTI1B-202ENST00000553619 AJAP1Q9UKB5 411 aaPredicted RBP5.28□□□□□ -1.56
VTI1B-202ENST00000553619 L1RE1Q9UN81 338 aa5.28□□□□□ -1.56
VTI1B-202ENST00000553619 SCINQ9Y6U3 715 aa5.28□□□□□ -1.56
VTI1B-202ENST00000553619 CEP350Q5VT06 3117 aa5.27□□□□□ -1.57
VTI1B-202ENST00000553619 TMCO5BA8MYB1 307 aa5.27□□□□□ -1.57
VTI1B-202ENST00000553619 H3BS24 57 aa5.27□□□□□ -1.57
VTI1B-202ENST00000553619 LPXNO60711 386 aa5.27□□□□□ -1.57
VTI1B-202ENST00000553619 GJB5O95377 273 aa5.27□□□□□ -1.57
VTI1B-202ENST00000553619 CBX7O95931 251 aa5.27□□□□□ -1.57
VTI1B-202ENST00000553619 RB1P06400 928 aa5.27□□□□□ -1.57
VTI1B-202ENST00000553619 UNGP13051 313 aaPredicted RBP5.27□□□□□ -1.57
VTI1B-202ENST00000553619 TNNT1P13805 278 aa5.27□□□□□ -1.57
VTI1B-202ENST00000553619 ATP2A2P16615 1042 aaKnown RBP5.27□□□□□ -1.57
VTI1B-202ENST00000553619 SYN1P17600 705 aa5.27□□□□□ -1.57
VTI1B-202ENST00000553619 LMO2P25791 158 aa5.27□□□□□ -1.57
VTI1B-202ENST00000553619 CDH5P33151 784 aaPredicted RBP5.27□□□□□ -1.57
VTI1B-202ENST00000553619 ARHGAP25P42331 645 aa5.27□□□□□ -1.57
VTI1B-202ENST00000553619 KIR3DL1P43629 444 aa5.27□□□□□ -1.57
VTI1B-202ENST00000553619 RAP1GAPP47736 663 aa5.27□□□□□ -1.57
VTI1B-202ENST00000553619 SLC11A1P49279 550 aa5.27□□□□□ -1.57
VTI1B-202ENST00000553619 BCAT1P54687 386 aa5.27□□□□□ -1.57
VTI1B-202ENST00000553619 HTRA4P83105 476 aaPredicted RBP5.27□□□□□ -1.57
VTI1B-202ENST00000553619 BST2Q10589 180 aaKnown RBP5.27□□□□□ -1.57
VTI1B-202ENST00000553619 TCEAL1Q15170 157 aa5.27□□□□□ -1.57
VTI1B-202ENST00000553619 TCTN1Q2MV58 587 aa5.27□□□□□ -1.57
VTI1B-202ENST00000553619 CTXN3Q4LDR2 81 aa5.27□□□□□ -1.57
VTI1B-202ENST00000553619 PAN2Q504Q3 1202 aaKnown RBP5.27□□□□□ -1.57
VTI1B-202ENST00000553619 FAM171A1Q5VUB5 890 aa5.27□□□□□ -1.57
VTI1B-202ENST00000553619 PRAMEF13Q5VWM6 474 aa5.27□□□□□ -1.57
VTI1B-202ENST00000553619 FAM171BQ6P995 826 aa5.27□□□□□ -1.57
VTI1B-202ENST00000553619 C22orf34Q6ZV56 151 aa5.27□□□□□ -1.57
VTI1B-202ENST00000553619 C16orf59Q7L2K0 433 aa5.27□□□□□ -1.57
VTI1B-202ENST00000553619 DDX53Q86TM3 631 aaKnown RBP5.27□□□□□ -1.57
VTI1B-202ENST00000553619 SPATA2LQ8IUW3 424 aaPredicted RBP5.27□□□□□ -1.57
VTI1B-202ENST00000553619 MCOLN2Q8IZK6 566 aa5.27□□□□□ -1.57
VTI1B-202ENST00000553619 COLGALT1Q8NBJ5 622 aa5.27□□□□□ -1.57
VTI1B-202ENST00000553619 B3GALNT2Q8NCR0 500 aa5.27□□□□□ -1.57
VTI1B-202ENST00000553619 C1orf131Q8NDD1 294 aaKnown RBP5.27□□□□□ -1.57
VTI1B-202ENST00000553619 ACRBPQ8NEB7 543 aa5.27□□□□□ -1.57
VTI1B-202ENST00000553619 KIF18AQ8NI77 898 aa5.27□□□□□ -1.57
VTI1B-202ENST00000553619 LNX1Q8TBB1 728 aaPredicted RBP5.27□□□□□ -1.57
VTI1B-202ENST00000553619 MYCBPAPQ8TBZ2 947 aa5.27□□□□□ -1.57
VTI1B-202ENST00000553619 C2orf15Q8WU43 125 aaKnown RBP5.27□□□□□ -1.57
VTI1B-202ENST00000553619 SLC20A1Q8WUM9 679 aa5.27□□□□□ -1.57
VTI1B-202ENST00000553619 KBTBD7Q8WVZ9 684 aa5.27□□□□□ -1.57
VTI1B-202ENST00000553619 CPA5Q8WXQ8 436 aa5.27□□□□□ -1.57
VTI1B-202ENST00000553619 RFFLQ8WZ73 363 aa5.27□□□□□ -1.57
VTI1B-202ENST00000553619 FUBP3Q96I24 572 aaKnown RBP eCLIP5.27□□□□□ -1.57
VTI1B-202ENST00000553619 IGSF21Q96ID5 467 aa5.27□□□□□ -1.57
VTI1B-202ENST00000553619 PPP1R13BQ96KQ4 1090 aa5.27□□□□□ -1.57
VTI1B-202ENST00000553619 BUD13Q9BRD0 619 aaKnown RBP eCLIP5.27□□□□□ -1.575e-7■□□□□ 10.6
VTI1B-202ENST00000553619 DESI2Q9BSY9 194 aa5.27□□□□□ -1.57
VTI1B-202ENST00000553619 SYT11Q9BT88 431 aa5.27□□□□□ -1.57
VTI1B-202ENST00000553619 DUSP16Q9BY84 665 aa5.27□□□□□ -1.57
VTI1B-202ENST00000553619 CWH43Q9H720 699 aa5.27□□□□□ -1.57
VTI1B-202ENST00000553619 LZTFL1Q9NQ48 299 aa5.27□□□□□ -1.57
VTI1B-202ENST00000553619 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP5.27□□□□□ -1.57
VTI1B-202ENST00000553619 PARVAQ9NVD7 372 aa5.27□□□□□ -1.57
VTI1B-202ENST00000553619 FAM53CQ9NYF3 392 aa5.27□□□□□ -1.57
VTI1B-202ENST00000553619 LMCD1Q9NZU5 365 aa5.27□□□□□ -1.57
VTI1B-202ENST00000553619 CTTNBP2NLQ9P2B4 639 aa5.27□□□□□ -1.57
VTI1B-202ENST00000553619 UVRAGQ9P2Y5 699 aa5.27□□□□□ -1.57
VTI1B-202ENST00000553619 DNAJB4Q9UDY4 337 aa5.27□□□□□ -1.57
VTI1B-202ENST00000553619 CNOT8Q9UFF9 292 aaKnown RBP5.27□□□□□ -1.57
VTI1B-202ENST00000553619 GTF3C4Q9UKN8 822 aa5.27□□□□□ -1.57
VTI1B-202ENST00000553619 TSPAN16Q9UKR8 245 aa5.27□□□□□ -1.57
VTI1B-202ENST00000553619 MAFFQ9ULX9 164 aa5.27□□□□□ -1.57
VTI1B-202ENST00000553619 WDR3Q9UNX4 943 aaKnown RBP eCLIP5.27□□□□□ -1.57
VTI1B-202ENST00000553619 PRG3Q9Y2Y8 225 aaPredicted RBP5.27□□□□□ -1.57
VTI1B-202ENST00000553619 PAXBP1Q9Y5B6 917 aa5.27□□□□□ -1.57
VTI1B-202ENST00000553619 LTBP2Q14767 1821 aa5.26□□□□□ -1.57
VTI1B-202ENST00000553619 HSFX4A0A1B0GTS1 333 aaPredicted RBP5.26□□□□□ -1.57
VTI1B-202ENST00000553619 HSFX3A0A1B0GWH4 333 aaPredicted RBP5.26□□□□□ -1.57
VTI1B-202ENST00000553619 SIGLEC16A6NMB1 481 aa5.26□□□□□ -1.57
VTI1B-202ENST00000553619 NT5C1B-RDH14C9J2C7 533 aa5.26□□□□□ -1.57
VTI1B-202ENST00000553619 M0QYV0 167 aa5.26□□□□□ -1.57
VTI1B-202ENST00000553619 MYO1FO00160 1098 aa5.26□□□□□ -1.57
VTI1B-202ENST00000553619 O00370 1275 aa5.26□□□□□ -1.57
VTI1B-202ENST00000553619 ZNF263O14978 683 aa5.26□□□□□ -1.57
VTI1B-202ENST00000553619 XPO1O14980 1071 aaKnown RBP5.26□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms