RNA–Protein interactions for RNA: ENST00000553488.5

ATXN3-219, Transcript of ataxin 3, humanhuman

TSL 1 (best)

Gene ATXN3, Length 1,065 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATXN3-219ENST00000553488 RNF38Q9H0F5 515 aa7.76□□□□□ -1.17
ATXN3-219ENST00000553488 CRTAC1Q9NQ79 661 aa7.76□□□□□ -1.17
ATXN3-219ENST00000553488 ARHGEF4Q9NR80 690 aa7.76□□□□□ -1.17
ATXN3-219ENST00000553488 TMEM30AQ9NV96 361 aa7.76□□□□□ -1.17
ATXN3-219ENST00000553488 CALCOCO1Q9P1Z2 691 aa7.76□□□□□ -1.17
ATXN3-219ENST00000553488 BCCIPQ9P287 314 aaKnown RBP eCLIP7.76□□□□□ -1.17
ATXN3-219ENST00000553488 AGAP1Q9UPQ3 857 aa7.76□□□□□ -1.17
ATXN3-219ENST00000553488 CPQQ9Y646 472 aa7.76□□□□□ -1.17
ATXN3-219ENST00000553488 MUC22E2RYF6 1773 aaPredicted RBP7.76□□□□□ -1.17
ATXN3-219ENST00000553488 IGHV1OR15-9A0A0B4J2B8 117 aa7.75□□□□□ -1.17
ATXN3-219ENST00000553488 A0A1W2PQF6 199 aa7.75□□□□□ -1.17
ATXN3-219ENST00000553488 MYMKA6NI61 221 aa7.75□□□□□ -1.17
ATXN3-219ENST00000553488 ATP2C2O75185 946 aa7.75□□□□□ -1.17
ATXN3-219ENST00000553488 TBCAO75347 108 aaKnown RBP7.75□□□□□ -1.17
ATXN3-219ENST00000553488 FTH1P19P0C7X4 201 aa7.75□□□□□ -1.17
ATXN3-219ENST00000553488 ADH5P11766 374 aa7.75□□□□□ -1.17
ATXN3-219ENST00000553488 PCSK1P29120 753 aa7.75□□□□□ -1.17
ATXN3-219ENST00000553488 GRIA2P42262 883 aa7.75□□□□□ -1.17
ATXN3-219ENST00000553488 TNFRSF4P43489 277 aa7.75□□□□□ -1.17
ATXN3-219ENST00000553488 LHX1P48742 406 aa7.75□□□□□ -1.17
ATXN3-219ENST00000553488 PSMC1P62191 440 aaKnown RBP7.75□□□□□ -1.17
ATXN3-219ENST00000553488 NOP14P78316 857 aaKnown RBP7.75□□□□□ -1.17
ATXN3-219ENST00000553488 TFAMQ00059 246 aaKnown RBP7.75□□□□□ -1.17
ATXN3-219ENST00000553488 RPL6Q02878 288 aaKnown RBP7.75□□□□□ -1.17
ATXN3-219ENST00000553488 GFPT1Q06210 699 aaPredicted RBP7.75□□□□□ -1.17
ATXN3-219ENST00000553488 ZNF33AQ06730 810 aa7.75□□□□□ -1.17
ATXN3-219ENST00000553488 KCNA1Q09470 495 aa7.75□□□□□ -1.17
ATXN3-219ENST00000553488 HNRNPDQ14103 355 aaKnown RBP7.75□□□□□ -1.17
ATXN3-219ENST00000553488 DHX8Q14562 1220 aaKnown RBP7.75□□□□□ -1.17
ATXN3-219ENST00000553488 VSTM1Q6UX27 236 aa7.75□□□□□ -1.17
ATXN3-219ENST00000553488 CCNI2Q6ZMN8 369 aaPredicted RBP7.75□□□□□ -1.17
ATXN3-219ENST00000553488 C4orf50Q6ZRC1 276 aa7.75□□□□□ -1.17
ATXN3-219ENST00000553488 DENND5BQ6ZUT9 1274 aa7.75□□□□□ -1.17
ATXN3-219ENST00000553488 ZC3HAV1Q7Z2W4 902 aaKnown RBP7.75□□□□□ -1.17
ATXN3-219ENST00000553488 RABEPKQ7Z6M1 372 aa7.75□□□□□ -1.17
ATXN3-219ENST00000553488 SFR1Q86XK3 245 aa7.75□□□□□ -1.17
ATXN3-219ENST00000553488 MIB1Q86YT6 1006 aa7.75□□□□□ -1.17
ATXN3-219ENST00000553488 GALNT12Q8IXK2 581 aa7.75□□□□□ -1.17
ATXN3-219ENST00000553488 POMGNT1Q8WZA1 660 aa7.75□□□□□ -1.17
ATXN3-219ENST00000553488 HVCN1Q96D96 273 aa7.75□□□□□ -1.17
ATXN3-219ENST00000553488 SAAL1Q96ER3 474 aa7.75□□□□□ -1.17
ATXN3-219ENST00000553488 AK8Q96MA6 479 aa7.75□□□□□ -1.17
ATXN3-219ENST00000553488 MTMR12Q9C0I1 747 aa7.75□□□□□ -1.17
ATXN3-219ENST00000553488 CD93Q9NPY3 652 aa7.75□□□□□ -1.17
ATXN3-219ENST00000553488 LATS2Q9NRM7 1088 aa7.75□□□□□ -1.17
ATXN3-219ENST00000553488 SMPD4Q9NXE4 827 aa7.75□□□□□ -1.17
ATXN3-219ENST00000553488 KCNK4Q9NYG8 393 aa7.75□□□□□ -1.17
ATXN3-219ENST00000553488 TRPM5Q9NZQ8 1165 aa7.75□□□□□ -1.17
ATXN3-219ENST00000553488 ITGA11Q9UKX5 1188 aa7.75□□□□□ -1.17
ATXN3-219ENST00000553488 NME7Q9Y5B8 376 aa7.75□□□□□ -1.17
ATXN3-219ENST00000553488 SNX9Q9Y5X1 595 aa7.75□□□□□ -1.17
ATXN3-219ENST00000553488 PTPRJQ12913 1337 aa7.75□□□□□ -1.17
ATXN3-219ENST00000553488 A0A1W2PQD8 194 aa7.74□□□□□ -1.17
ATXN3-219ENST00000553488 PALM2-AKAP2B1ALY0 433 aaPredicted RBP7.74□□□□□ -1.17
ATXN3-219ENST00000553488 F8VP50 259 aa7.74□□□□□ -1.17
ATXN3-219ENST00000553488 H3BRJ5 948 aa7.74□□□□□ -1.17
ATXN3-219ENST00000553488 SLC9A3R1O14745 358 aaPredicted RBP7.74□□□□□ -1.17
ATXN3-219ENST00000553488 HOXC11O43248 304 aaPredicted RBP7.74□□□□□ -1.17
ATXN3-219ENST00000553488 SH3BP5O60239 455 aa7.74□□□□□ -1.17
ATXN3-219ENST00000553488 CBFA2T3O75081 653 aa7.74□□□□□ -1.17
ATXN3-219ENST00000553488 TULP3O75386 442 aa7.74□□□□□ -1.17
ATXN3-219ENST00000553488 HOXB2P14652 356 aa7.74□□□□□ -1.17
ATXN3-219ENST00000553488 BDNFP23560 247 aa7.74□□□□□ -1.17
ATXN3-219ENST00000553488 LMO2P25791 158 aa7.74□□□□□ -1.17
ATXN3-219ENST00000553488 CASP5P51878 434 aa7.74□□□□□ -1.17
ATXN3-219ENST00000553488 ATXN3P54252 364 aaPredicted RBP7.74□□□□□ -1.17
ATXN3-219ENST00000553488 CACNA2D1P54289 1103 aa7.74□□□□□ -1.17
ATXN3-219ENST00000553488 GRIN1Q05586 938 aa7.74□□□□□ -1.17
ATXN3-219ENST00000553488 SLC14A1Q13336 389 aa7.74□□□□□ -1.17
ATXN3-219ENST00000553488 BYSLQ13895 437 aaKnown RBP7.74□□□□□ -1.17
ATXN3-219ENST00000553488 TRIP6Q15654 476 aaKnown RBP7.74□□□□□ -1.17
ATXN3-219ENST00000553488 LY6G5CQ5SRR4 150 aa7.74□□□□□ -1.17
ATXN3-219ENST00000553488 SLC36A4Q6YBV0 504 aa7.74□□□□□ -1.17
ATXN3-219ENST00000553488 ZNF720Q7Z2F6 126 aa7.74□□□□□ -1.17
ATXN3-219ENST00000553488 GLRX5Q86SX6 157 aa7.74□□□□□ -1.17
ATXN3-219ENST00000553488 NAXDQ8IW45 347 aa7.74□□□□□ -1.17
ATXN3-219ENST00000553488 DEFB119Q8N690 84 aa7.74□□□□□ -1.17
ATXN3-219ENST00000553488 ZNF513Q8N8E2 541 aaPredicted RBP7.74□□□□□ -1.17
ATXN3-219ENST00000553488 TERB1Q8NA31 727 aa7.74□□□□□ -1.17
ATXN3-219ENST00000553488 BAHD1Q8TBE0 780 aaPredicted RBP7.74□□□□□ -1.17
ATXN3-219ENST00000553488 MDM1Q8TC05 714 aa7.74□□□□□ -1.17
ATXN3-219ENST00000553488 LARP4BQ92615 738 aaKnown RBP7.74□□□□□ -1.17
ATXN3-219ENST00000553488 PCED1BQ96HM7 432 aa7.74□□□□□ -1.17
ATXN3-219ENST00000553488 HSPA12BQ96MM6 686 aa7.74□□□□□ -1.17
ATXN3-219ENST00000553488 DUSP9Q99956 384 aaKnown RBP7.74□□□□□ -1.17
ATXN3-219ENST00000553488 FAM213AQ9BRX8 229 aa7.74□□□□□ -1.17
ATXN3-219ENST00000553488 ZHX3Q9H4I2 956 aa7.74□□□□□ -1.17
ATXN3-219ENST00000553488 CCDC86Q9H6F5 360 aaKnown RBP7.74□□□□□ -1.17
ATXN3-219ENST00000553488 AKTIPQ9H8T0 292 aa7.74□□□□□ -1.17
ATXN3-219ENST00000553488 RBAKQ9NYW8 714 aaPredicted RBP7.74□□□□□ -1.17
ATXN3-219ENST00000553488 CFAP97Q9P2B7 532 aa7.74□□□□□ -1.17
ATXN3-219ENST00000553488 DKK4Q9UBT3 224 aa7.74□□□□□ -1.17
ATXN3-219ENST00000553488 CDH9Q9ULB4 789 aa7.74□□□□□ -1.17
ATXN3-219ENST00000553488 COL6A6A6NMZ7 2263 aa7.73□□□□□ -1.17
ATXN3-219ENST00000553488 E2F8A0AVK6 867 aa7.73□□□□□ -1.17
ATXN3-219ENST00000553488 TRIM24O15164 1050 aa7.73□□□□□ -1.17
ATXN3-219ENST00000553488 NDUFB5O43674 189 aa7.73□□□□□ -1.17
ATXN3-219ENST00000553488 ADAM11O75078 769 aa7.73□□□□□ -1.17
ATXN3-219ENST00000553488 WISP1O95388 367 aa7.73□□□□□ -1.17
ATXN3-219ENST00000553488 KRT18P05783 430 aaKnown RBP7.73□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms